Pregenerated sensors for RHOX3H (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071769Ensembl transcript IDs: ENSMUST00000096457.7, ENSMUST00000184824.7, ENSMUST00000185138.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | AACGTTAGGAGAAGAAAACAATTCCTCTCTCTATGTTaGCTAGGCGATAGTGGCACTTCAGGGTTCTTCCAC | + |
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Preference number: 3 (lower is better) Translates to: NVRRRKQFLSLC*LGDSGTSGFFH Trigger: GTGGAAGAACCCTGAAGTGCCACTATCGCCTAGGCAACATAGAGAGAGGAATTGTTTTCTTCTCCTAACGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 |
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| CDS-3UTR TCA 90 bp | CTATGTTGCCTAGGCGATAGTGGCACTTCAGGGTTCTTCCACAGTCTTCAGGAAATCTTCCTCATTTCTTaGCTCTTCAGCCGGCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: LCCLGDSGTSGFFHSLQEIFLIS*LFSRQN Trigger: GTTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGAT...TTCCTGAAGACTGTGGAAGAACCCTGAAGTGCCACTATCGCCTAGGCAACATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 |
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| CDS-3UTR TCA 90 bp | GCGATAGTGGCACTTCAGGGTTCTTCCACAGTCTTCAGGAAAGATGTTCTGAGAATCTTCCTCATTTCTTaGCTCTTCAGCCGGCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: AIVALQGSSTVFRKDVLRIFLIS*LFSRQN Trigger: GTTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGAT...TCTCAGAACATCTTTCCTGAAGACTGTGGAAGAACCCTGAAGTGCCACTATCGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 |
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| CDS-3UTR TCA 90 bp | GTTAGGAGAAGAAAACAATTCCTCTCTCTATGTTGCCTAGGCGATAGTGGCACTATCTTCCTCATTTCTTaGCTCTTCAGCCGGCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: VRRRKQFLSLCCLGDSGTIFLIS*LFSRQN Trigger: GTTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGAT...AGTGCCACTATCGCCTAGGCAACATAGAGAGAGGAATTGTTTTCTTCTCCTAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS CCA 90 bp | TTCGTCCAGCTGCCACTGGGTGAATCTATGGTGCAATCGACGTCGTaGTACCTGCCTTGGCGCTTCAGCCTGGTCACTCTCTCCTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: FVQLPLGESMVQSTS*YLPWRFSLVTLSFN Trigger: GTTGAAGGAGAGAGTGACCAGGCTGAAGCGCCAAGGCAGGTACCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS TCA 90 bp | GGCTCCCAATGCCGACTCCACCTGTCCTCCATCTTCCTCATTTCTTaGCTCTTCAGCCGGCAAAACCTTGGTACCTTGGGTGCTGTCCAT | + |
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Preference number: 5 (lower is better) Translates to: GSQCRLHLSSIFLIS*LFSRQNLGTLGAVH Trigger: ATGGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS GCA 90 bp | AAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTGAATCTATGGTaGAATCGACGTCGTGGTACCTGCCTTGGCGCTTCAGCCTGGTCA | + |
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Preference number: 5 (lower is better) Translates to: KILSSSSSCHWVNLW*NRRRGTCLGASAWS Trigger: TGACCAGGCTGAAGCGCCAAGGCAGGTACCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS GCA 90 bp | TGCCACCATCTTCCTTGTTCCTATCTTCCTCTACAAGGCCTGCAGTaGCAGCGGCGGCGGGACTCTCTCCATTTAATGCTTCTTTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: CHHLPCSYLPLQGLQ*QRRRDSLHLMLLFL Trigger: GAGGAAAAGAAGCATTAAATGGAGAGAGTCCCGCCGCCGCTGGCACTGCAGGCCTTGTAGAGGAAGATAGGAACAAGGAAGATGGTGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS TCA 90 bp | AATTCATCCGGAAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTaGATCTATGGTGCAATCGACGTCGTGGTACCTGCCTTGGCGCTT | + |
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Preference number: 5 (lower is better) Translates to: NSSGKFSPVRPAATG*IYGAIDVVVPALAL Trigger: AAGCGCCAAGGCAGGTACCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTTCCGGATGAATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS-3UTR CAA 90 bp | TCAGGGTTCTTCCACAGTCTTCAGGAAAGATGTTCTGAGAAGCAGGAGGAGAACTCAGCCGGCAAAACCTaGGTACCTTGGGTGCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: SGFFHSLQERCSEKQEENSAGKT*VPWVLS Trigger: GGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGA...GTTCTCCTCCTGCTTCTCAGAACATCTTTCCTGAAGACTGTGGAAGAACCCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 |
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| CDS-3UTR CAA 90 bp | ATAGTGGCACTTCAGGGTTCTTCCACAGTCTTCAGGAAAGATGTTCTGAGAAGCTCAGCCGGCAAAACCTaGGTACCTTGGGTGCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: IVALQGSSTVFRKDVLRSSAGKT*VPWVLS Trigger: GGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGA...GCTTCTCAGAACATCTTTCCTGAAGACTGTGGAAGAACCCTGAAGTGCCACTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 |
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| CDS-3UTR CAA 90 bp | AGAAGAAAACAATTCCTCTCTCTATGTTGCCTAGGCGATAGTGGCACTTCAGGGTTCTTCTCACCTCCCTaGGTGCCACCATCTTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: RRKQFLSLCCLGDSGTSGFFSPP*VPPSSL Trigger: CAAGGAAGATGGTGGCACCAAGGGAGGTGAGAAGAA...CCCTGAAGTGCCACTATCGCCTAGGCAACATAGAGAGAGGAATTGTTTTCTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096457.7 |
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| CDS-3UTR CAA 90 bp | CATAACGTTAGGAGAAGAAAACAATTCCTCTCTCTATGTTGCCTAGGCGATAGTTCAGCCGGCAAAACCTaGGTACCTTGGGTGCTGTCC | + |
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Preference number: 5 (lower is better) Translates to: HNVRRRKQFLSLCCLGDSSAGKT*VPWVLS Trigger: GGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGA...ACTATCGCCTAGGCAACATAGAGAGAGGAATTGTTTTCTTCTCCTAACGTTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS CCA 90 bp | TCTTCCTCATTTCTTGACTCTTCAGCCGGCAAAACCTTGGTACCTTaGGTGCTGTCCATTTTAGTCTCACATCCGTTGACTGACCTTGAA | + |
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Preference number: 5 (lower is better) Translates to: SSSFLDSSAGKTLVP*VLSILVSHPLTDLE Trigger: TTCAAGGTCAGTCAACGGATGTGAGACTAAAATGGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS-3UTR CAA 90 bp | TCTTCCACAGTCTTCAGGAAAGATGTTCTGAGAAGCAGGAGGAGAACTTCTGAGCATCTTCCTCATTTCTaGACTCTTCAGCCGGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: SSTVFRKDVLRSRRRTSEHLPHF*TLQPAK Trigger: TTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGATG...CTCAGAAGTTCTCCTCCTGCTTCTCAGAACATCTTTCCTGAAGACTGTGGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 |
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| CDS-3UTR CAA 90 bp | CATAACGTTAGGAGAAGAAAACAATTCCTCTCTCTATGTTGCCTAGGCGATAGTTTCTTCTCACCTCCCTaGGTGCCACCATCTTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: HNVRRRKQFLSLCCLGDSFFSPP*VPPSSL Trigger: CAAGGAAGATGGTGGCACCAAGGGAGGTGAGAAGAA...ACTATCGCCTAGGCAACATAGAGAGAGGAATTGTTTTCTTCTCCTAACGTTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS-3UTR CAA 90 bp | GTTAGGAGAAGAAAACAATTCCTCTCTCTATGTTGCCTAGGCGATAGTGGCACTCATCTTCCTCATTTCTaGACTCTTCAGCCGGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: VRRRKQFLSLCCLGDSGTHLPHF*TLQPAK Trigger: TTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGATG...AGTGCCACTATCGCCTAGGCAACATAGAGAGAGGAATTGTTTTCTTCTCCTAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS CAA 90 bp | CGGCGGCGGGACTCTCTCCATTTAATGCTTCTTTTCCTCTACCCCTaGCGGCTGTGGCTCCCAATGCCGACTCCACCTGTCCTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: RRRDSLHLMLLFLYP*RLWLPMPTPPVLHL Trigger: AAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAGAAGCATTAAATGGAGAGAGTCCCGCCGCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS CCA 72 bp | CTCTCCAGTTCGTCCAGCTGCCACTGGGTGAATCTATaGTGCAATCGACGTCGTGGTACCTGCCTTGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: LSSSSSCHWVNL*CNRRRGTCLGA Trigger: AGCGCCAAGGCAGGTACCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS CAA 90 bp | ACTTCCTGCTCATTCTTCTCACCTCCCTTGGTGCCACCATCTTCCTaGTTCCTATCTTCCTCTACAAGGCCTGCAGTGCCAGCGGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: TSCSFFSPPLVPPSS*FLSSSTRPAVPAAA Trigger: CGCCGCCGCTGGCACTGCAGGCCTTGTAGAGGAAGATAGGAACAAGGAAGATGGTGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS CAA 90 bp | CTCTCCTCTTCTGAAACCATCTCTCCCTTGGTGCCACCATCTTCCTaGTTCCTATCTTCCTCTACAAGGCCTGCAGTGCCAGCGGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: LSSSETISPLVPPSS*FLSSSTRPAVPAAA Trigger: CGCCGCCGCTGGCACTGCAGGCCTTGTAGAGGAAGATAGGAACAAGGAAGATGGTGGCACCAAGGGAGAGATGGTTTCAGAAGAGGAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184824.7 |
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| CDS GCA 72 bp | TCCAGTTCGTCCAGCTGCCACTGGGTGAATCTATGGTaGAATCGACGTCGTGGTACCTGCCTTGGCGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SSSSSCHWVNLW*NRRRGTCLGAS Trigger: TGAAGCGCCAAGGCAGGTACCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS CAA 90 bp | TGGCTCCCAATGCCGACTCCACCTGTCCTCCATCTTCCTCATTTCTaGACTCTTCAGCCGGCAAAACCTTGGTACCTTGGGTGCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: WLPMPTPPVLHLPHF*TLQPAKPWYLGCCP Trigger: TGGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS TCA 72 bp | GGAAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTaGATCTATGGTGCAATCGACGTCGTGGTACCTGCC | + |
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Preference number: 6 (lower is better) Translates to: GKFSPVRPAATG*IYGAIDVVVPA Trigger: GGCAGGTACCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS GCA 72 bp | CTTCCTTGTTCCTATCTTCCTCTACAAGGCCTGCAGTaGCAGCGGCGGCGGGACTCTCTCCATTTAATGCTT | + |
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Preference number: 6 (lower is better) Translates to: LPCSYLPLQGLQ*QRRRDSLHLML Trigger: AAGCATTAAATGGAGAGAGTCCCGCCGCCGCTGGCACTGCAGGCCTTGTAGAGGAAGATAGGAACAAGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS CCA 72 bp | GAATCTATGGTGCAATCGACGTCGTGGTACCTGCCTTaGCGCTTCAGCCTGGTCACTCTCTCCTTCAACATG | + |
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Preference number: 6 (lower is better) Translates to: ESMVQSTSWYLP*RFSLVTLSFNM Trigger: CATGTTGAAGGAGAGAGTGACCAGGCTGAAGCGCCAAGGCAGGTACCACGACGTCGATTGCACCATAGATTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS CAA 72 bp | ATGCCGACTCCACCTGTCCTCCATCTTCCTCATTTCTaGACTCTTCAGCCGGCAAAACCTTGGTACCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: MPTPPVLHLPHF*TLQPAKPWYLG Trigger: CCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGATGGAGGACAGGTGGAGTCGGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS CAA 72 bp | TGCTCCCTCACTTCCTGCTCATTCTTCTCACCTCCCTaGGTGCCACCATCTTCCTTGTTCCTATCTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: CSLTSCSFFSPP*VPPSSLFLSSS Trigger: AGAGGAAGATAGGAACAAGGAAGATGGTGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGGAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS GCA 72 bp | CCCTCACTTCCTGCTCATTCTTCTCACCTCCCTTGGTaGCACCATCTTCCTTGTTCCTATCTTCCTCTACAA | + |
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Preference number: 6 (lower is better) Translates to: PSLPAHSSHLPW*HHLPCSYLPLQ Trigger: TTGTAGAGGAAGATAGGAACAAGGAAGATGGTGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096457.7 ENSMUST00000185138.8 |
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| CDS CAA 90 bp | TGTCCTCCATCTTCCTCATTTCTTGACTCTTCAGCCGGCAAAACCTaGGTACCTTGGGTGCTGTCCATTTTAGTCTCACATCCGTTGACT | + |
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Preference number: 6 (lower is better) Translates to: CPPSSSFLDSSAGKT*VPWVLSILVSHPLT Trigger: AGTCAACGGATGTGAGACTAAAATGGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGTCAAGAAATGAGGAAGATGGAGGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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| CDS CCA 72 bp | TTTCTTGACTCTTCAGCCGGCAAAACCTTGGTACCTTaGGTGCTGTCCATTTTAGTCTCACATCCGTTGACT | + |
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Preference number: 6 (lower is better) Translates to: FLDSSAGKTLVP*VLSILVSHPLT Trigger: AGTCAACGGATGTGAGACTAAAATGGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGTCAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000096457.7 ENSMUST00000184824.7 ENSMUST00000185138.8 |
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