Pregenerated sensors for RHOX3G (Mus musculus)

Ensembl gene IDs: ENSMUSG00000080933

Ensembl transcript IDs: ENSMUST00000119965.3

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	GAGAAGAAAGCAATTCATTTCTCTCTGTTGCCTTGGTaGTATTTGCACTGCAGGGTTCCTCCACAGTCTTCA	+
Preference number: 3 (lower is better) Translates to: EKKAIHFSLLPW*YLHCRVPPQSS Trigger: TGAAGACTGTGGAGGAACCCTGCAGTGCAAATATCACCAAGGCAACAGAGAGAAATGAATTGCTTTCTTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119965.3
3UTR GCA 72 bp	AAGCAATTCATTTCTCTCTGTTGCCTTGGTGATATTTaGACTGCAGGGTTCCTCCACAGTCTTCATGAAAGA	+
Preference number: 3 (lower is better) Translates to: KQFISLCCLGDI*TAGFLHSLHER Trigger: TCTTTCATGAAGACTGTGGAGGAACCCTGCAGTGCAAATATCACCAAGGCAACAGAGAGAAATGAATTGCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119965.3
CDS CCA 90 bp	GACTCTCTCCATTTAATGCTTCTTTTCCTCTACCCCTTGCGGCTGTaGCTCCCAATGCCGACTCCACCTGTCCTCCATCTTCCTCATTTC	+
Preference number: 5 (lower is better) Translates to: DSLHLMLLFLYPLRL*LPMPTPPVLHLPHF Trigger: GAAATGAGGAAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAGAAGCATTAAATGGAGAGAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119965.3
CDS GCA 72 bp	TCCAGTTCGTCCAGCTGCCACTGGGTGAATCTATGGTaGAATCGACGTCGTGGCACCTGCCTTGGCGCTTCA	+
Preference number: 6 (lower is better) Translates to: SSSSSCHWVNLW*NRRRGTCLGAS Trigger: TGAAGCGCCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119965.3
CDS GCA 72 bp	TTCTTTTCCTCTACCCCTTGCGGCTGTGGCTCCCAATaGCGACTCCACCTGTCCTCCATCTTCCTCATTTCT	+
Preference number: 6 (lower is better) Translates to: FFSSTPCGCGSQ*RLHLSSIFLIS Trigger: AGAAATGAGGAAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119965.3
CDS GCA 72 bp	CTTCCTTGTTCCTGTCTTCCTCTACAAGGCCTGCAGTaGCAGCAGCGGCGGGACTCTCTCCATTTAATGCTT	+
Preference number: 6 (lower is better) Translates to: LPCSCLPLQGLQ*QQRRDSLHLML Trigger: AAGCATTAAATGGAGAGAGTCCCGCCGCTGCTGGCACTGCAGGCCTTGTAGAGGAAGACAGGAACAAGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119965.3
CDS CCA 72 bp	GCTCCCTCACTTCCTGCTCATTCTTCTCACCTCCCTTaGTGCCACCATCTTCCTTGTTCCTGTCTTCCTCTA	+
Preference number: 6 (lower is better) Translates to: APSLPAHSSHLP*CHHLPCSCLPL Trigger: TAGAGGAAGACAGGAACAAGGAAGATGGTGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119965.3
CDS GCA 72 bp	CCCTCACTTCCTGCTCATTCTTCTCACCTCCCTTGGTaGCACCATCTTCCTTGTTCCTGTCTTCCTCTACAA	+
Preference number: 6 (lower is better) Translates to: PSLPAHSSHLPW*HHLPCSCLPLQ Trigger: TTGTAGAGGAAGACAGGAACAAGGAAGATGGTGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119965.3

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