Pregenerated sensors for RHOX3F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095510Ensembl transcript IDs: ENSMUST00000115172.12, ENSMUST00000183696.2, ENSMUST00000184451.8, ENSMUST00000185008.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTTCTCTCTGTTGCCTTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCTACCCCTTGCGGCTGTaGCTCCCAATGCCGACTCGA | + |
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Preference number: 4 (lower is better) Translates to: FLSVALVIFALQGSSTVFYPLRL*LPMPTR Trigger: TCGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTA...GAAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAAGGCAACAGAGAGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS-3UTR CCA 90 bp | GTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCATGAAAGATGTTCTGAGATACCCCTTGCGGCTGTaGCTCCCAATGCCGACTCGA | + |
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Preference number: 4 (lower is better) Translates to: VIFALQGSSTVFMKDVLRYPLRL*LPMPTR Trigger: TCGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTA...TCTCAGAACATCTTTCATGAAGACTGTGGAGGAACCCTGCAGTGCAAATATTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS-3UTR CCA 90 bp | TCCTCCACAGTCTTCATGAAAGATGTTCTGAGAAGCAGGAGGAGAACTTCTGAGCTTAGCGCTTCAGCCTaGTCACTCTCTCCTTCAACA | + |
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Preference number: 4 (lower is better) Translates to: SSTVFMKDVLRSRRRTSELSASA*SLSPST Trigger: TGTTGAAGGAGAGAGTGACCAGGCTGAAGCGCTAAG...CTCAGAAGTTCTCCTCCTGCTTCTCAGAACATCTTTCATGAAGACTGTGGAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 |
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| CDS-3UTR GCA 90 bp | TCTCTCTGTTGCCTTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCATATCTTCCTCATTTCTTaGCTCTTCAGCCGGCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: SLCCLGNICTAGFLHSLHIFLIS*LFSRQN Trigger: GTTTTGCCGGCTGAAGAGGCAAGAAATGAGGAAGAT...ATGAAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAAGGCAACAGAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS-3UTR CCA 90 bp | TTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCATGAAAGATGTTCTGCTTAGCGCTTCAGCCTaGTCACTCTCTCCTTCAACA | + |
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Preference number: 4 (lower is better) Translates to: LVIFALQGSSTVFMKDVLLSASA*SLSPST Trigger: TGTTGAAGGAGAGAGTGACCAGGCTGAAGCGCTAAG...CAGAACATCTTTCATGAAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 |
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| CDS-3UTR TCA 90 bp | ATTTCTCTCTGTTGCCTTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTTTTTCTCTCCTCTTCTaGAACCATCTCTCCCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: ISLCCLGNICTAGFLHSLFSLLF*NHLSLG Trigger: ACCAAGGGAGAGATGGTTTCAGAAGAGGAGAGAAAA...AAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAAGGCAACAGAGAGAAAT 44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000185008.8 |
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| CDS-3UTR GCA 90 bp | TTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCATGAAAGATGTTCTGATCTTCCTCATTTCTTaGCTCTTCAGCCGGCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: LVIFALQGSSTVFMKDVLIFLIS*LFSRQN Trigger: GTTTTGCCGGCTGAAGAGGCAAGAAATGAGGAAGAT...CAGAACATCTTTCATGAAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS-3UTR GCA 90 bp | GTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCATGAAAGATGTTCTGAGAATCTTCCTCATTTCTTaGCTCTTCAGCCGGCAAAAC | + |
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Preference number: 4 (lower is better) Translates to: VIFALQGSSTVFMKDVLRIFLIS*LFSRQN Trigger: GTTTTGCCGGCTGAAGAGGCAAGAAATGAGGAAGAT...TCTCAGAACATCTTTCATGAAGACTGTGGAGGAACCCTGCAGTGCAAATATTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS-3UTR TCA 90 bp | ATTTCTCTCTGTTGCCTTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTTTTTCTCTCCTCTTCTaGAACCATCTCTTCACTATG | + |
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Preference number: 4 (lower is better) Translates to: ISLCCLGNICTAGFLHSLFSLLF*NHLFTM Trigger: CATAGTGAAGAGATGGTTTCAGAAGAGGAGAGAAAA...AAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAAGGCAACAGAGAGAAAT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 |
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| CDS-3UTR TCA 90 bp | TTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCATGAAAGATGTTCTGTTTTCTCTCCTCTTCTaGAACCATCTCTTCACTATG | + |
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Preference number: 4 (lower is better) Translates to: LVIFALQGSSTVFMKDVLFSLLF*NHLFTM Trigger: CATAGTGAAGAGATGGTTTCAGAAGAGGAGAGAAAA...CAGAACATCTTTCATGAAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 |
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| CDS GCA 90 bp | AGCGCTTCAGCCTGGTCACTCTCTCCTTCAACATGCTCAGGAATCTaGTCCCTCACTTCCTGCTCATTCTTCTCACCTCCCTTGGTGCCA | + |
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Preference number: 5 (lower is better) Translates to: SASAWSLSPSTCSGI*SLTSCSFFSPPLVP Trigger: TGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGGAGCAGATTCCTGAGCATGTTGAAGGAGAGAGTGACCAGGCTGAAGCGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 |
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| CDS GCA 90 bp | AAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTGAATCTATGGTaGAATCGACGTCGTGGCACCTGCCTTAGCGCTTCAGCCTGGTCA | + |
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Preference number: 5 (lower is better) Translates to: KILSSSSSCHWVNLW*NRRRGTCLSASAWS Trigger: TGACCAGGCTGAAGCGCTAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 |
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| CDS TCA 90 bp | AATTCATCCGGAAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTaGATCTATGGTGCAATCGACGTCGTGGCACCTGCCTTAGCGCTT | + |
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Preference number: 5 (lower is better) Translates to: NSSGKFSPVRPAATG*IYGAIDVVAPALAL Trigger: AAGCGCTAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTTCCGGATGAATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 |
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| CDS CCA 90 bp | GACTCTCTCCATTTAATGCTTCTTTTCCTCTACCCCTTGCGGCTGTaGCTCCCAATGCCGACTCGACCTGTCCTCCATCTTCCTCATTTC | + |
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Preference number: 5 (lower is better) Translates to: DSLHLMLLFLYPLRL*LPMPTRPVLHLPHF Trigger: GAAATGAGGAAGATGGAGGACAGGTCGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAGAAGCATTAAATGGAGAGAGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS-3UTR CAA 90 bp | TTTCTCTCTGTTGCCTTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCCAAAACCTTGGTACCTaGGGTGTTGTCCATTTTAGT | + |
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Preference number: 5 (lower is better) Translates to: FLSVALVIFALQGSSTVFQNLGT*GVVHFS Trigger: ACTAAAATGGACAACACCCAAGGTACCAAGGTTTTG...GAAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAAGGCAACAGAGAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS-3UTR CAA 90 bp | GTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCATGAAAGATGTTCTGAGACATCTTCCTCATTTCTaGCCTCTTCAGCCGGCAAAA | + |
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Preference number: 5 (lower is better) Translates to: VIFALQGSSTVFMKDVLRHLPHF*PLQPAK Trigger: TTTTGCCGGCTGAAGAGGCAAGAAATGAGGAAGATG...TCTCAGAACATCTTTCATGAAGACTGTGGAGGAACCCTGCAGTGCAAATATTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS-3UTR CAA 90 bp | ATTTCTCTCTGTTGCCTTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCAAAACCTTGGTACCTaGGGTGTTGTCCATTTTAGT | + |
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Preference number: 5 (lower is better) Translates to: ISLCCLGNICTAGFLHSLQNLGT*GVVHFS Trigger: ACTAAAATGGACAACACCCAAGGTACCAAGGTTTTG...AAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAAGGCAACAGAGAGAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS-3UTR CAA 90 bp | TTGGTAATATTTGCACTGCAGGGTTCCTCCACAGTCTTCATGAAAGATGTTCTGCAAAACCTTGGTACCTaGGGTGTTGTCCATTTTAGT | + |
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Preference number: 5 (lower is better) Translates to: LVIFALQGSSTVFMKDVLQNLGT*GVVHFS Trigger: ACTAAAATGGACAACACCCAAGGTACCAAGGTTTTG...CAGAACATCTTTCATGAAGACTGTGGAGGAACCCTGCAGTGCAAATATTACCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS CAA 90 bp | CAGCGGCGGGACTCTCTCCATTTAATGCTTCTTTTCCTCTACCCCTaGCGGCTGTGGCTCCCAATGCCGACTCGACCTGTCCTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: QRRDSLHLMLLFLYP*RLWLPMPTRPVLHL Trigger: AAGATGGAGGACAGGTCGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAGAAGCATTAAATGGAGAGAGTCCCGCCGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS GCA 72 bp | TCCAGTTCGTCCAGCTGCCACTGGGTGAATCTATGGTaGAATCGACGTCGTGGCACCTGCCTTAGCGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SSSSSCHWVNLW*NRRRGTCLSAS Trigger: TGAAGCGCTAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 |
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| CDS CAA 72 bp | ATGCCGACTCGACCTGTCCTCCATCTTCCTCATTTCTaGCCTCTTCAGCCGGCAAAACCTTGGTACCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: MPTRPVLHLPHF*PLQPAKPWYLG Trigger: CCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCAAGAAATGAGGAAGATGGAGGACAGGTCGAGTCGGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS CCA 72 bp | CATTTAATGCTTCTTTTCCTCTACCCCTTGCGGCTGTaGCTCCCAATGCCGACTCGACCTGTCCTCCATCTT | + |
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Preference number: 6 (lower is better) Translates to: HLMLLFLYPLRL*LPMPTRPVLHL Trigger: AAGATGGAGGACAGGTCGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAGAAGCATTAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS CAA 72 bp | GCCTCTTCAGCCGGCAAAACCTTGGTACCTTGGGTGTaGTCCATTTTAGTCTCACATCCGTTGACTGACCTT | + |
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Preference number: 6 (lower is better) Translates to: ASSAGKTLVPWV*SILVSHPLTDL Trigger: AAGGTCAGTCAACGGATGTGAGACTAAAATGGACAACACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS CCA 72 bp | TTTCTTGCCTCTTCAGCCGGCAAAACCTTGGTACCTTaGGTGTTGTCCATTTTAGTCTCACATCCGTTGACT | + |
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Preference number: 6 (lower is better) Translates to: FLASSAGKTLVP*VLSILVSHPLT Trigger: AGTCAACGGATGTGAGACTAAAATGGACAACACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS CAA 72 bp | ATTTCTTGCCTCTTCAGCCGGCAAAACCTTGGTACCTaGGGTGTTGTCCATTTTAGTCTCACATCCGTTGAC | + |
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Preference number: 6 (lower is better) Translates to: ISCLFSRQNLGT*GVVHFSLTSVD Trigger: GTCAACGGATGTGAGACTAAAATGGACAACACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCAAGAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS CAA 72 bp | TCTTCCTCATTTCTTGCCTCTTCAGCCGGCAAAACCTaGGTACCTTGGGTGTTGTCCATTTTAGTCTCACAT | + |
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Preference number: 6 (lower is better) Translates to: SSSFLASSAGKT*VPWVLSILVSH Trigger: ATGTGAGACTAAAATGGACAACACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCAAGAAATGAGGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115172.12 ENSMUST00000183696.2 ENSMUST00000184451.8 ENSMUST00000185008.8 |
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| CDS TCA 72 bp | CATGAAAGATGTTCTGAGAAGCAGGAGGAGAACTTCTaGGACCTTATAGCCTCTTATACCACCTGTATTTTT | + |
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Preference number: 6 (lower is better) Translates to: HERCSEKQEENF*DLIASYTTCIF Trigger: AAAAATACAGGTGGTATAAGAGGCTATAAGGTCTCAGAAGTTCTCCTCCTGCTTCTCAGAACATCTTTCATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183696.2 |
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