Pregenerated sensors for RHOX3E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059626

Ensembl transcript IDs: ENSMUST00000081327.12, ENSMUST00000115198.10, ENSMUST00000184210.8, ENSMUST00000184270.2

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 90 bp	AACATATCGTTAGGAGATGAAAGCAATTCCTCTCTCTATGTTGCCTaGGCGATAGTGGCACTGCAGGGTTCCTCCACAGTCTTCAGGAAA	+
Preference number: 2 (lower is better) Translates to: NISLGDESNSSLYVA*AIVALQGSSTVFRK Trigger: TTTCCTGAAGACTGTGGAGGAACCCTGCAGTGCCACTATCGCCAAGGCAACATAGAGAGAGGAATTGCTTTCATCTCCTAACGATATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115198.10 ENSMUST00000184210.8
3UTR CAA 72 bp	TTAGGAGATGAAAGCAATTCCTCTCTCTATGTTGCCTaGGCGATAGTGGCACTGCAGGGTTCCTCCACAGTC	+
Preference number: 4 (lower is better) Translates to: LGDESNSSLYVA*AIVALQGSSTV Trigger: GACTGTGGAGGAACCCTGCAGTGCCACTATCGCCAAGGCAACATAGAGAGAGGAATTGCTTTCATCTCCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115198.10 ENSMUST00000184210.8
CDS TCA 90 bp	AATTCATCCGGAAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTaGATCTATGGTGCAATCGACGTCGTGGCACCTGCCTTGGCGCTT	+
Preference number: 5 (lower is better) Translates to: NSSGKFSPVRPAATG*IYGAIDVVAPALAL Trigger: AAGCGCCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTTCCGGATGAATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000081327.12 ENSMUST00000115198.10 ENSMUST00000184270.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu