Pregenerated sensors for RHOX3C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079636

Ensembl transcript IDs: ENSMUST00000115188.9, ENSMUST00000115189.10, ENSMUST00000123851.8, ENSMUST00000151387.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TTCGTCCAGCTGCCACTGGGTGAATCTATGGTGCAATCGACGTCGTaGCACCTGCCTTGGTGCTTCAGCCTGGTCACTCTCTCCTTCAAC	+
Preference number: 5 (lower is better) Translates to: FVQLPLGESMVQSTS*HLPWCFSLVTLSFN Trigger: GTTGAAGGAGAGAGTGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS GCA 90 bp	GGCTCCCAATGCCGACTCCACCTGTCCTCCATCTTCCTCATTTCTTaGCTCTTCAGCCGGCAAAACCTTGGTACCTTGGGTGCTGTCCAT	+
Preference number: 5 (lower is better) Translates to: GSQCRLHLSSIFLIS*LFSRQNLGTLGAVH Trigger: ATGGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCAAGAAATGAGGAAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8 ENSMUST00000151387.2
CDS GCA 90 bp	GGTGCTTCAGCCTGGTCACTCTCTCCTTCAACATGCTCAGGAATCTaGTCCCTCACTTCCTGCTCATTCTTCTCACCTCCCTTGGTGCCA	+
Preference number: 5 (lower is better) Translates to: GASAWSLSPSTCSGI*SLTSCSFFSPPLVP Trigger: TGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGGAGCAGATTCCTGAGCATGTTGAAGGAGAGAGTGACCAGGCTGAAGCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS GCA 90 bp	CTGGGTGAATCTATGGTGCAATCGACGTCGTGGCACCTGCCTTGGTaGTTCAGCCTGGTCACTCTCTCCTTCAACATGCTCAGGAATCTG	+
Preference number: 5 (lower is better) Translates to: LGESMVQSTSWHLPW*FSLVTLSFNMLRNL Trigger: CAGATTCCTGAGCATGTTGAAGGAGAGAGTGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS GCA 90 bp	AAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTGAATCTATGGTaGAATCGACGTCGTGGCACCTGCCTTGGTGCTTCAGCCTGGTCA	+
Preference number: 5 (lower is better) Translates to: KILSSSSSCHWVNLW*NRRRGTCLGASAWS Trigger: TGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS CCA 90 bp	CCACTGGGTGAATCTATGGTGCAATCGACGTCGTGGCACCTGCCTTaGTGCTTCAGCCTGGTCACTCTCTCCTTCAACATGCTCAGGAAT	+
Preference number: 5 (lower is better) Translates to: PLGESMVQSTSWHLP*CFSLVTLSFNMLRN Trigger: ATTCCTGAGCATGTTGAAGGAGAGAGTGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS TCA 90 bp	AATTCATCCGGAAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTaGATCTATGGTGCAATCGACGTCGTGGCACCTGCCTTGGTGCTT	+
Preference number: 5 (lower is better) Translates to: NSSGKFSPVRPAATG*IYGAIDVVAPALVL Trigger: AAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTTCCGGATGAATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS CCA 72 bp	CTGCCACTGGGTGAATCTATGGTGCAATCGACGTCGTaGCACCTGCCTTGGTGCTTCAGCCTGGTCACTCTC	+
Preference number: 6 (lower is better) Translates to: LPLGESMVQSTS*HLPWCFSLVTL Trigger: GAGAGTGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS CAA 90 bp	CAGCGGCGGGACTCTCTCCATTTAATGCTTCTTTTCCTCTACCCCTaGCGGCTGTGGCTCCCAATGCCGACTCCACCTGTCCTCCATCTT	+
Preference number: 6 (lower is better) Translates to: QRRDSLHLMLLFLYP*RLWLPMPTPPVLHL Trigger: AAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAGAAGCATTAAATGGAGAGAGTCCCGCCGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8 ENSMUST00000151387.2
CDS GCA 72 bp	TCCAGTTCGTCCAGCTGCCACTGGGTGAATCTATGGTaGAATCGACGTCGTGGCACCTGCCTTGGTGCTTCA	+
Preference number: 6 (lower is better) Translates to: SSSSSCHWVNLW*NRRRGTCLGAS Trigger: TGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS CAA 90 bp	TGGCTCCCAATGCCGACTCCACCTGTCCTCCATCTTCCTCATTTCTaGCCTCTTCAGCCGGCAAAACCTTGGTACCTTGGGTGCTGTCCA	+
Preference number: 6 (lower is better) Translates to: WLPMPTPPVLHLPHF*PLQPAKPWYLGCCP Trigger: TGGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCAAGAAATGAGGAAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8 ENSMUST00000151387.2
CDS GCA 72 bp	TCTATGGTGCAATCGACGTCGTGGCACCTGCCTTGGTaGTTCAGCCTGGTCACTCTCTCCTTCAACATGCTC	+
Preference number: 6 (lower is better) Translates to: SMVQSTSWHLPW*FSLVTLSFNML Trigger: GAGCATGTTGAAGGAGAGAGTGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS GCA 72 bp	TGGGTGAATCTATGGTGCAATCGACGTCGTGGCACCTaGCTTGGTGCTTCAGCCTGGTCACTCTCTCCTTCA	+
Preference number: 6 (lower is better) Translates to: WVNLWCNRRRGT*LGASAWSLSPS Trigger: TGAAGGAGAGAGTGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS CCA 72 bp	AATCGACGTCGTGGCACCTGCCTTGGTGCTTCAGCCTaGTCACTCTCTCCTTCAACATGCTCAGGAATCTGC	+
Preference number: 6 (lower is better) Translates to: NRRRGTCLGASA*SLSPSTCSGIC Trigger: GCAGATTCCTGAGCATGTTGAAGGAGAGAGTGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS CCA 72 bp	GAATCTATGGTGCAATCGACGTCGTGGCACCTGCCTTaGTGCTTCAGCCTGGTCACTCTCTCCTTCAACATG	+
Preference number: 6 (lower is better) Translates to: ESMVQSTSWHLP*CFSLVTLSFNM Trigger: CATGTTGAAGGAGAGAGTGACCAGGCTGAAGCACCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8
CDS CAA 72 bp	ATGCCGACTCCACCTGTCCTCCATCTTCCTCATTTCTaGCCTCTTCAGCCGGCAAAACCTTGGTACCTTGGG	+
Preference number: 6 (lower is better) Translates to: MPTPPVLHLPHF*PLQPAKPWYLG Trigger: CCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCAAGAAATGAGGAAGATGGAGGACAGGTGGAGTCGGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8 ENSMUST00000151387.2
CDS CAA 72 bp	ATTTCTTGCCTCTTCAGCCGGCAAAACCTTGGTACCTaGGGTGCTGTCCATTTTAGTCTCACATCCGTAGAC	+
Preference number: 6 (lower is better) Translates to: ISCLFSRQNLGT*GAVHFSLTSVD Trigger: GTCTACGGATGTGAGACTAAAATGGACAGCACCCAAGGTACCAAGGTTTTGCCGGCTGAAGAGGCAAGAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000115188.9 ENSMUST00000115189.10 ENSMUST00000123851.8 ENSMUST00000151387.2