Pregenerated sensors for RHOX3A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095601

Ensembl transcript IDs: ENSMUST00000096459.11, ENSMUST00000183543.8, ENSMUST00000183901.2, ENSMUST00000184565.8

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 72 bp	TTAGGAGACGAAAGCAATTCCTCTCTCTATGTTGCCTaGGCGATAGTGGCACTGCAGGGTTCCTCCACAGTC	+
Preference number: 4 (lower is better) Translates to: LGDESNSSLYVA*AIVALQGSSTV Trigger: GACTGTGGAGGAACCCTGCAGTGCCACTATCGCCAAGGCAACATAGAGAGAGGAATTGCTTTCGTCTCCTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096459.11 ENSMUST00000183901.2
CDS GCA 90 bp	GGCGCTTCAGCCTGGTCACTCTCTCCTTCAACATGCTCAGGAATCTaGTCCCTCACTTCCTGCTCATTCTTCTCACCTCCCTTGGTGCCA	+
Preference number: 5 (lower is better) Translates to: GASAWSLSPSTCSGI*SLTSCSFFSPPLVP Trigger: TGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGGAGCAGATTCCTGAGCATGTTGAAGGAGAGAGTGACCAGGCTGAAGCGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096459.11 ENSMUST00000183543.8 ENSMUST00000184565.8
CDS GCA 90 bp	AAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTGAATCTATGGTaGAATCGACGTCGTGGCACCTGCCTTGGCGCTTCAGCCTGGTCA	+
Preference number: 5 (lower is better) Translates to: KILSSSSSCHWVNLW*NRRRGTCLGASAWS Trigger: TGACCAGGCTGAAGCGCCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000096459.11 ENSMUST00000183543.8 ENSMUST00000184565.8
CDS GCA 90 bp	TGCCACCATCTTCCTTGTTCCTGTCTTCCTCTACAAGGCCTGCAGTaGCAGCAGCGGCGGGACTCTCTCCATTTAATGCTTCTTTTCCTC	+
Preference number: 5 (lower is better) Translates to: CHHLPCSCLPLQGLQ*QQRRDSLHLMLLFL Trigger: GAGGAAAAGAAGCATTAAATGGAGAGAGTCCCGCCGCTGCTGGCACTGCAGGCCTTGTAGAGGAAGACAGGAACAAGGAAGATGGTGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000096459.11 ENSMUST00000183543.8 ENSMUST00000183901.2 ENSMUST00000184565.8
CDS CAA 72 bp	TGCTCCCTCACTTCCTGCTCATTCTTCTCACCTCCCTaGGTGCCACCATCTTCCTTGTTCCTGTCTTCCTCT	+
Preference number: 6 (lower is better) Translates to: CSLTSCSFFSPP*VPPSSLFLSSS Trigger: AGAGGAAGACAGGAACAAGGAAGATGGTGGCACCAAGGGAGGTGAGAAGAATGAGCAGGAAGTGAGGGAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096459.11 ENSMUST00000183543.8 ENSMUST00000184565.8
CDS CAA 72 bp	TGTATTGTTCTCTCCTCTTCTGAAACCATCTCTCCCTaGGTGCCACCATCTTCCTTGTTCCTGTCTTCCTCT	+
Preference number: 6 (lower is better) Translates to: CIVLSSSETISP*VPPSSLFLSSS Trigger: AGAGGAAGACAGGAACAAGGAAGATGGTGGCACCAAGGGAGAGATGGTTTCAGAAGAGGAGAGAACAATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183901.2

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