Pregenerated sensors for RHOX3A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071772

Ensembl transcript IDs: ENSMUST00000115203.10, ENSMUST00000185028.8, ENSMUST00000185050.3

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TTCGTCCAGCTGCCACTGGGTGAATCTATGGTGCAATCGACGTCGTaGCACCTGCCTTGGCGCTTCAGCCTGGTCACTCTCTCCTTCAAC	+
Preference number: 5 (lower is better) Translates to: FVQLPLGESMVQSTS*HLPWRFSLVTLSFN Trigger: GTTGAAGGAGAGAGTGACCAGGCTGAAGCGCCAAGGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115203.10 ENSMUST00000185028.8
CDS CCA 90 bp	GACTCTCTCCATTTAATGCTTCTTTTCCTCTACCCCTTGCGGCTGTaGCTCCCAATGCCGACTCCACCTGTCCTCCATCTTCTTCATTTT	+
Preference number: 5 (lower is better) Translates to: DSLHLMLLFLYPLRL*LPMPTPPVLHLLHF Trigger: AAAATGAAGAAGATGGAGGACAGGTGGAGTCGGCATTGGGAGCCACAGCCGCAAGGGGTAGAGGAAAAGAAGCATTAAATGGAGAGAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000115203.10 ENSMUST00000185028.8 ENSMUST00000185050.3
CDS TCA 72 bp	GGAAAATTCTCTCCAGTTCGTCCAGCTGCCACTGGGTaGATCTATGGTGCAATCGACGTCGTGGCACCTGCC	+
Preference number: 6 (lower is better) Translates to: GKFSPVRPAATG*IYGAIDVVAPA Trigger: GGCAGGTGCCACGACGTCGATTGCACCATAGATTCACCCAGTGGCAGCTGGACGAACTGGAGAGAATTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115203.10 ENSMUST00000185028.8
CDS TCA 72 bp	AGCCTCTTATACCACCTGTATTGTTCTCTCCTCTTCTaGAACCATCTCTTCACTATGGCTTCATTCACACCC	+
Preference number: 6 (lower is better) Translates to: SLLYHLYCSLLF*NHLFTMASFTP Trigger: GGGTGTGAATGAAGCCATAGTGAAGAGATGGTTTCAGAAGAGGAGAGAACAATACAGGTGGTATAAGAGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115203.10
CDS TCA 72 bp	CAGGAAAGATGTTCTGAGAAGCAGGAGGAGAACTTCTaGGACCTTATAGCCTCTTATACCACCTGTATTGTT	+
Preference number: 6 (lower is better) Translates to: QERCSEKQEENF*DLIASYTTCIV Trigger: AACAATACAGGTGGTATAAGAGGCTATAAGGTCTCAGAAGTTCTCCTCCTGCTTCTCAGAACATCTTTCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185028.8

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