Pregenerated sensors for RHOX2H (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079627Ensembl transcript IDs: ENSMUST00000115162.2, ENSMUST00000184088.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCGGCACAACATCGTCTGTCTACAGTGACTTGAGCATGGGTGGCTaGCTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAAT | + |
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Preference number: 1 (lower is better) Translates to: GGTTSSVYSDLSMGG*LGLLHSLHTEMLRN Trigger: ATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGCAGCCACCCATGCTCAAGTCACTGTAGACAGACGATGTTGTGCCGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| 3UTR TCA 90 bp | ATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTaGGCCTTTACAGCCTCTTATAACTCCTGTATTTCTCTCTCCTCT | + |
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Preference number: 1 (lower is better) Translates to: IAFTQRCSGMQEEDL*AFTASYNSCISLSS Trigger: AGAGGAGAGAGAAATACAGGAGTTATAAGAGGCTGTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184088.2 |
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| 3UTR GCA 72 bp | ACATCGTCTGTCTACAGTGACTTGAGCATGGGTGGCTaGCTGGGGCTTCTCCATAGCCTTCACACAGAGATG | + |
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Preference number: 3 (lower is better) Translates to: TSSVYSDLSMGG*LGLLHSLHTEM Trigger: CATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGCAGCCACCCATGCTCAAGTCACTGTAGACAGACGATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| 3UTR TCA 72 bp | ACACAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTaGGCCTTTACAGCCTCTTATAACTCCTGTATTTCT | + |
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Preference number: 3 (lower is better) Translates to: TQRCSGMQEEDL*AFTASYNSCIS Trigger: AGAAATACAGGAGTTATAAGAGGCTGTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184088.2 |
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| 3UTR TCA 72 bp | ATTGAGAATTCAGCTCTTTATTGCAAATACAAGTATTaGGGAGATAACTGTGTTGTAACAGGGCTTTGGCGG | + |
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Preference number: 3 (lower is better) Translates to: IENSALYCKYKY*GDNCVVTGLWR Trigger: CCGCCAAAGCCCTGTTACAACACAGTTATCTCCTCAATACTTGTATTTGCAATAAAGAGCTGAATTCTCAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184088.2 |
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| CDS-3UTR GCA 90 bp | GGTGGCTGCCTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAACTGGCTCCTCTGGCTaGGTCTCCTTCTCCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GGCLGLLHSLHTEMLRNATGSSG*VSFSWA Trigger: TGCCCAGGAGAAGGAGACGCAGCCAGAGGAGCCAGT...TGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGCAGCCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS-3UTR CCA 90 bp | GCTGCCTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAAGGGACTGGCTCCTCTaGCTGCGTCTCCTTCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: AAWGFSIAFTQRCSGMQERDWLL*LRLLLL Trigger: CAGGAGAAGGAGACGCAGCCAGAGGAGCCAGTCCCT...TTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS-3UTR CCA 90 bp | GGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGACCTCAGGGACTGGCTCCTCTaGCTGCGTCTCCTTCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: GFSIAFTQRCSGMQEEDLRDWLL*LRLLLL Trigger: CAGGAGAAGGAGACGCAGCCAGAGGAGCCAGTCCCT...GAGGTCCTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS-3UTR TCA 90 bp | TGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGACGGTTGCTGTTATCCATaGGGCCTGCTACAGGCGCAG | + |
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Preference number: 4 (lower is better) Translates to: WGFSIAFTQRCSGMQEEDGCCYP*GLLQAQ Trigger: CTGCGCCTGTAGCAGGCCTCATGGATAACAGCAACC...GTCCTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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| CDS-3UTR GCA 90 bp | AGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTGAGCCTTTACACTGGCTCCTCTGGCTaGGTCTCCTTCTCCTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: SLHTEMLRNAGRGPLSLYTGSSG*VSFSWA Trigger: TGCCCAGGAGAAGGAGACGCAGCCAGAGGAGCCAGT...GTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184088.2 |
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| CDS-3UTR CCA 90 bp | TGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGACTGCGTCTCCTTCTCCTaGGCACAGCCAGTGGCACTA | + |
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Preference number: 4 (lower is better) Translates to: WGFSIAFTQRCSGMQEEDCVSFS*AQPVAL Trigger: TAGTGCCACTGGCTGTGCCCAGGAGAAGGAGACGCA...GTCCTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS-3UTR GCA 90 bp | GGCTGCCTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGACACACCCATGGATCTTaGCAGGCGATTTTCCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: GCLGLLHSLHTEMLRNAGHTHGS*QAIFLC Trigger: ACAGAGGAAAATCGCCTGGCAAGATCCATGGGTGTG...TCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGCAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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| CDS-3UTR CCA 90 bp | AGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTGAGCCTTTACTGCGTCTCCTTCTCCTaGGCACAGCCAGTGGCACTA | + |
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Preference number: 4 (lower is better) Translates to: SLHTEMLRNAGRGPLSLYCVSFS*AQPVAL Trigger: TAGTGCCACTGGCTGTGCCCAGGAGAAGGAGACGCA...GTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184088.2 |
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| CDS-3UTR CCA 90 bp | GGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGACCTGCACTAAGGTCCTCTTaGTTGCTGTTATCCATGAGG | + |
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Preference number: 4 (lower is better) Translates to: GLLHSLHTEMLRNAGRGPALRSS*LLLSMR Trigger: CCTCATGGATAACAGCAACCAAGAGGACCTTAGTGC...AGGTCCTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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| CDS-3UTR GCA 90 bp | CTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGAGATTGCACTGGAAGATaGTCTCCAGCTCTTGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: LGLLHSLHTEMLRNAGRGDCTGR*SPALVV Trigger: AACTACAAGAGCTGGAGAGCATCTTCCAGTGCAATC...TCCTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS-3UTR GCA 90 bp | GCCTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGTTCAAAAACCATTCCTaGACTGTGGCTTCACTCACA | + |
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Preference number: 4 (lower is better) Translates to: AWGFSIAFTQRCSGMQEEFKNHS*TVASLT Trigger: TGTGAGTGAAGCCACAGTGCAGGAATGGTTTTTGAA...CTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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| CDS-3UTR GCA 90 bp | AGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTGAGCCTTTACGATTGCACTGGAAGATaGTCTCCAGCTCTTGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: SLHTEMLRNAGRGPLSLYDCTGR*SPALVV Trigger: AACTACAAGAGCTGGAGAGCATCTTCCAGTGCAATC...GTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184088.2 |
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| CDS CCA 90 bp | CCCATGGAATCAGGGACTGGCTCCTCTGGCTGCGTCTCCTTCTCCTaGGCACAGCCAGTGGCACTAAGGTCCTCTTGGTTGCTGTTATCC | + |
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Preference number: 5 (lower is better) Translates to: PMESGTGSSGCVSFS*AQPVALRSSWLLLS Trigger: GGATAACAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAAGGAGACGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS GCA 90 bp | ACATTTTCCAAATCCCCCATGGAATCAGGGACTGGCTCCTCTGGCTaGGTCTCCTTCTCCTGGGCACAGCCAGTGGCACTAAGGTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: TFSKSPMESGTGSSG*VSFSWAQPVALRSS Trigger: AGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAAGGAGACGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGGGATTTGGAAAATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS CCA 90 bp | CTTTACATTTTCCAAATCCCCCATGGAATCAGGGACTGGCTCCTCTaGCTGCGTCTCCTTCTCCTGGGCACAGCCAGTGGCACTAAGGTC | + |
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Preference number: 5 (lower is better) Translates to: LYIFQIPHGIRDWLL*LRLLLLGTASGTKV Trigger: GACCTTAGTGCCACTGGCTGTGCCCAGGAGAAGGAGACGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGGGATTTGGAAAATGTAAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS-3UTR CAA 90 bp | TGCCTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGCACTAAGGTCCTCTaGGTTGCTGTTATCCATGAG | + |
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Preference number: 5 (lower is better) Translates to: CLGLLHSLHTEMLRNAGRGTKVL*VAVIHE Trigger: CTCATGGATAACAGCAACCAAGAGGACCTTAGTGCC...TCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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| CDS-3UTR CAA 90 bp | ATGGGTGGCTGCCTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATTGTAGTTGCAGCACATaGAAGTTGTGTCGCCAAAGG | + |
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Preference number: 5 (lower is better) Translates to: MGGCLGLLHSLHTEMLRNCSCST*KLCRQR Trigger: CCTTTGGCGACACAACTTCAATGTGCTGCAACTACA...ATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGCAGCCACCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS-3UTR CAA 90 bp | GCTGCCTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAATGTAGTTGCAGCACATaGAAGTTGTGTCGCCAAAGG | + |
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Preference number: 5 (lower is better) Translates to: AAWGFSIAFTQRCSGMQECSCST*KLCRQR Trigger: CCTTTGGCGACACAACTTCAATGTGCTGCAACTACA...TTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS-3UTR CAA 90 bp | TGCCTGGGGCTTCTCCATAGCCTTCACACAGAGATGCTCCGGAATGCAGGAAGAGGCACTAAGGTCCTCTaGGTTGCTGTTATCCATGNN | + |
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Preference number: 5 (lower is better) Translates to: CLGLLHSLHTEMLRNAGRGTKVL*VAVIHX Trigger: NNCATGGATAACAGCAACCAAGAGGACCTTAGTGCC...TCTTCCTGCATTCCGGAGCATCTCTGTGTGAAGGCTATGGAGAAGCCCCAGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184088.2 |
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| CDS TCA 90 bp | TTTGGGCACCAACACTCTCACAGGATTAACAGTGGACCACGGCCCTaGCATAGGCTTTACATTTTCCAAATCCCCCATGGAATCAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: FGHQHSHRINSGPRP*HRLYIFQIPHGIRD Trigger: GTCCCTGATTCCATGGGGGATTTGGAAAATGTAAAGCCTATGTCAGGGCCGTGGTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS GCA 90 bp | TCCAGCTCTTGTAGTTGCAGCACATTGAAGTTGTGTCGCCAAAGGTaGCGGAATTTGGGCACCAACACTCTCACAGGATTAACAGTGGAC | + |
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Preference number: 5 (lower is better) Translates to: SSSCSCSTLKLCRQR*RNLGTNTLTGLTVD Trigger: GTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCCAAATTCCGGCACCTTTGGCGACACAACTTCAATGTGCTGCAACTACAAGAGCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS CCA 72 bp | TCAGGGACTGGCTCCTCTGGCTGCGTCTCCTTCTCCTaGGCACAGCCAGTGGCACTAAGGTCCTCTTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: SGTGSSGCVSFS*AQPVALRSSWL Trigger: CAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAAGGAGACGCAGCCAGAGGAGCCAGTCCCTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS CCA 72 bp | TTCCAAATCCCCCATGGAATCAGGGACTGGCTCCTCTaGCTGCGTCTCCTTCTCCTGGGCACAGCCAGTGGC | + |
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Preference number: 6 (lower is better) Translates to: FQIPHGIRDWLL*LRLLLLGTASG Trigger: GCCACTGGCTGTGCCCAGGAGAAGGAGACGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGGGATTTGGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS GCA 72 bp | AAATCCCCCATGGAATCAGGGACTGGCTCCTCTGGCTaGGTCTCCTTCTCCTGGGCACAGCCAGTGGCACTA | + |
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Preference number: 6 (lower is better) Translates to: KSPMESGTGSSG*VSFSWAQPVAL Trigger: TAGTGCCACTGGCTGTGCCCAGGAGAAGGAGACGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGGGATTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS CAA 72 bp | TCCTGGGCACAGCCAGTGGCACTAAGGTCCTCTTGGTaGCTGTTATCCATGAGGCCTGCTACAGGCGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SWAQPVALRSSW*LLSMRPATGAA Trigger: GGCTGCGCCTGTAGCAGGCCTCATGGATAACAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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| CDS CAA 72 bp | CTTCTCCTGGGCACAGCCAGTGGCACTAAGGTCCTCTaGGTTGCTGTTATCCATGAGGCCTGCTACAGGCGC | + |
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Preference number: 6 (lower is better) Translates to: LLLGTASGTKVL*VAVIHEACYRR Trigger: GCGCCTGTAGCAGGCCTCATGGATAACAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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| CDS CCA 72 bp | TTCTCCTGGGCACAGCCAGTGGCACTAAGGTCCTCTTaGTTGCTGTTATCCATGAGGCCTGCTACAGGCGCA | + |
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Preference number: 6 (lower is better) Translates to: FSWAQPVALRSS*LLLSMRPATGA Trigger: TGCGCCTGTAGCAGGCCTCATGGATAACAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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| CDS CAA 90 bp | TGTAGTTGCAGCACATTGAAGTTGTGTCGCCAAAGGTGCCGGAATTaGGGCACCAACACTCTCACAGGATTAACAGTGGACCACGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: CSCSTLKLCRQRCRN*GTNTLTGLTVDHGP Trigger: AGGGCCGTGGTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCCAAATTCCGGCACCTTTGGCGACACAACTTCAATGTGCTGCAACTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS TCA 72 bp | GGAAGATGCTCTCCAGCTCTTGTAGTTGCAGCACATTaGAGTTGTGTCGCCAAAGGTGCCGGAATTTGGGCA | + |
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Preference number: 6 (lower is better) Translates to: GRCSPALVVAAH*SCVAKGAGIWA Trigger: TGCCCAAATTCCGGCACCTTTGGCGACACAACTTCAATGTGCTGCAACTACAAGAGCTGGAGAGCATCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS GCA 72 bp | TTCCTGCACTGTGGCTTCACTCACACCCATGGATCTTaGCAGGCGATTTTCCTCTGTAGTGCTGATGTAGTG | + |
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Preference number: 6 (lower is better) Translates to: FLHCGFTHTHGS*QAIFLCSADVV Trigger: CACTACATCAGCACTACAGAGGAAAATCGCCTGGCAAGATCCATGGGTGTGAGTGAAGCCACAGTGCAGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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| CDS CAA 72 bp | TGGAAGATGCTCTCCAGCTCTTGTAGTTGCAGCACATaGAAGTTGTGTCGCCAAAGGTGCCGGAATTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: WKMLSSSCSCST*KLCRQRCRNLG Trigger: GCCCAAATTCCGGCACCTTTGGCGACACAACTTCAATGTGCTGCAACTACAAGAGCTGGAGAGCATCTTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS CAA 72 bp | AGCACATTGAAGTTGTGTCGCCAAAGGTGCCGGAATTaGGGCACCAACACTCTCACAGGATTAACAGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: STLKLCRQRCRN*GTNTLTGLTVD Trigger: GTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCCAAATTCCGGCACCTTTGGCGACACAACTTCAATGTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115162.2 ENSMUST00000184088.2 |
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| CDS GCA 72 bp | CTCCTGTATTTCTCTCTCCTCTTCAAAAACCATTCCTaGACTGTGGCTTCACTCACACCCATGGATCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: LLYFSLLFKNHS*TVASLTPMDLA Trigger: GGCAAGATCCATGGGTGTGAGTGAAGCCACAGTGCAGGAATGGTTTTTGAAGAGGAGAGAGAAATACAGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115162.2 |
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