Pregenerated sensors for RHOX2G (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079629Ensembl transcript IDs: ENSMUST00000115169.4, ENSMUST00000183888.3
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCGGCACAACATCATCTGTCTACAGTGACTTGAGCATGGGTGGCTaGCTGGGGCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAAT | + |
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Preference number: 1 (lower is better) Translates to: GGTTSSVYSDLSMGG*LGLLHSLHREMLRN Trigger: ATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGCCCCAGGCAGCCACCCATGCTCAAGTCACTGTAGACAGATGATGTTGTGCCGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| 3UTR TCA 90 bp | TGTAACAGGACTTTGGCGGCACAACATCATCTGTCTACAGTGACTTaGGCATGGGTGGCTGCCTGGGGCTTCTCCACAGCCTTCACAGAG | + |
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Preference number: 1 (lower is better) Translates to: CNRTLAAQHHLSTVT*AWVAAWGFSTAFTE Trigger: CTCTGTGAAGGCTGTGGAGAAGCCCCAGGCAGCCACCCATGCTCAAGTCACTGTAGACAGATGATGTTGTGCCGCCAAAGTCCTGTTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| 3UTR GCA 90 bp | CTGCCTGGGGCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATaGAGGAAGAGGACCTCTGAGCCTTTACAGCCTCTTATAACTCCT | + |
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Preference number: 1 (lower is better) Translates to: LPGASPQPSQRDAPE*RKRTSEPLQPLITP Trigger: AGGAGTTATAAGAGGCTGTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGCCCCAGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183888.3 |
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| 3UTR TCA 90 bp | ACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTaGGCCTTTACAGCCTCTTATAACTCCTGTATTTCTCTCTCCTCT | + |
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Preference number: 1 (lower is better) Translates to: TAFTERCSGMQEEDL*AFTASYNSCISLSS Trigger: AGAGGAGAGAGAAATACAGGAGTTATAAGAGGCTGTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183888.3 |
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| 3UTR-3UTR GCA 90 bp | TTTGGCGGCACAACATCATCTGTCTACAGTGACTTGAGCATGGGTGGCTGCCTGAGAGATGCTCCGGAATaGAGGAAGAGGACCTCTGAG | + |
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Preference number: 2 (lower is better) Translates to: FGGTTSSVYSDLSMGGCLRDAPE*RKRTSE Trigger: CTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCT...CAGGCAGCCACCCATGCTCAAGTCACTGTAGACAGATGATGTTGTGCCGCCAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| 3UTR GCA 72 bp | GCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATaGAGGAAGAGGACCTCTGAGCCTTTACAGCCTCTT | + |
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Preference number: 3 (lower is better) Translates to: ASPQPSQRDAPE*RKRTSEPLQPL Trigger: AAGAGGCTGTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183888.3 |
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| 3UTR TCA 72 bp | ACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTaGGCCTTTACAGCCTCTTATAACTCCTGTATTTCT | + |
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Preference number: 3 (lower is better) Translates to: TERCSGMQEEDL*AFTASYNSCIS Trigger: AGAAATACAGGAGTTATAAGAGGCTGTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183888.3 |
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| CDS-3UTR CCA 90 bp | CTGGGGCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTGGGCACAGCCAGTaGCACCAAGGTCCTCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: LGLLHSLHREMLRNAGRGPGHSQ*HQGPLG Trigger: ACCAAGAGGACCTTGGTGCCACTGGCTGTGCCCAGG...TCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGCCCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS-3UTR CCA 90 bp | GGGGCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTGCTTCTCCTTCTCCTaGGCACAGCCAGTGGCACCA | + |
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Preference number: 4 (lower is better) Translates to: GASPQPSQRDAPECRKRTCFSFS*AQPVAP Trigger: TGGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCA...GGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGCCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS-3UTR CCA 90 bp | GACTTTGGCGGCACAACATCATCTGTCTACAGTGACTTGAGCATGGGTGGCTGCCCTGGGCACAGCCAGTaGCACCAAGGTCCTCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: DFGGTTSSVYSDLSMGGCPGHSQ*HQGPLG Trigger: ACCAAGAGGACCTTGGTGCCACTGGCTGTGCCCAGG...GCAGCCACCCATGCTCAAGTCACTGTAGACAGATGATGTTGTGCCGCCAAAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| 3UTR CAA 72 bp | GACTTTGGCGGCACAACATCATCTGTCTACAGTGACTaGAGCATGGGTGGCTGCCTGGGGCTTCTCCACAGC | + |
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Preference number: 4 (lower is better) Translates to: DFGGTTSSVYSD*SMGGCLGLLHS Trigger: GCTGTGGAGAAGCCCCAGGCAGCCACCCATGCTCAAGTCACTGTAGACAGATGATGTTGTGCCGCCAAAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS-3UTR TCA 90 bp | GGGGCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCGTAGTTGCAGCACATTaGAGCTCTGTTGCCAACCGT | + |
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Preference number: 4 (lower is better) Translates to: GASPQPSQRDAPECRKRTVVAAH*SSVANR Trigger: ACGGTTGGCAACAGAGCTTCAATGTGCTGCAACTAC...GGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS-3UTR CCA 90 bp | ACAACATCATCTGTCTACAGTGACTTGAGCATGGGTGGCTGCCTGGGGCTTCTCTGCTTCTCCTTCTCCTaGGCACAGCCAGTGGCACCA | + |
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Preference number: 4 (lower is better) Translates to: TTSSVYSDLSMGGCLGLLCFSFS*AQPVAP Trigger: TGGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCA...GAGAAGCCCCAGGCAGCCACCCATGCTCAAGTCACTGTAGACAGATGATGTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS-3UTR CCA 90 bp | GGGGCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCCTTTACTCACACCCATaGATCTTGCCAGACACTTTG | + |
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Preference number: 4 (lower is better) Translates to: GASPQPSQRDAPECRKRTLYSHP*ILPDTL Trigger: CAAAGTGTCTGGCAAGATCCATGGGTGTGAGTAAAG...GGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS-3UTR GCA 90 bp | CTGGGGCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGATTCAAAAACCATTCCTaGACTGTGGCTTTACTCACA | + |
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Preference number: 4 (lower is better) Translates to: LGLLHSLHREMLRNAGRGFKNHS*TVALLT Trigger: TGTGAGTAAAGCCACAGTGCAGGAATGGTTTTTGAA...TCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGCCCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS CCA 90 bp | TGCTTCTCCTTCTCCTGGGCACAGCCAGTGGCACCAAGGTCCTCTTaGTTGTTGTTATCCATGAGGTCGGCTACTGGCGCAGCAAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: CFSFSWAQPVAPRSS*LLLSMRSATGAASP Trigger: TGGGCTTGCTGCGCCAGTAGCCGACCTCATGGATAACAACAACCAAGAGGACCTTGGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS GCA 90 bp | ACATTTTCCAAATCCCCCATGGAATCAGGGACTGGCTCCTCTGGCTaGTTCTCCTTCTCCTGGGCACAGCCAGTGGCACCAAGGTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: TFSKSPMESGTGSSG*FSFSWAQPVAPRSS Trigger: AGAGGACCTTGGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGGGATTTGGAAAATGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS-3UTR CAA 90 bp | GGGGCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCACACCCATGGATCTaGCCAGACACTTTGCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: GASPQPSQRDAPECRKRTSHPWI*PDTLPL Trigger: CAGAGGCAAAGTGTCTGGCAAGATCCATGGGTGTGA...GGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS TCA 90 bp | TTCAGGCACCAACACTCTCACAGGATTAACAGTGGACCACGGCCCTaGCATAGGCTTTACATTTTCCAAATCCCCCATGGAATCAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: FRHQHSHRINSGPRP*HRLYIFQIPHGIRD Trigger: GTCCCTGATTCCATGGGGGATTTGGAAAATGTAAAGCCTATGTCAGGGCCGTGGTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCTGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS TCA 90 bp | GATTGCACTGGAAGATGCTCTCCAGCTCTTGTAGTTGCAGCACATTaGAGCTCTGTTGCCAACCGTGAAGGAATTCAGGCACCAACACTC | + |
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Preference number: 5 (lower is better) Translates to: DCTGRCSPALVVAAH*SSVANREGIQAPTL Trigger: GAGTGTTGGTGCCTGAATTCCTTCACGGTTGGCAACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGAGAGCATCTTCCAGTGCAATC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS TCA 90 bp | TCCAGCTCTTGTAGTTGCAGCACATTGAAGCTCTGTTGCCAACCGTaGAGGAATTCAGGCACCAACACTCTCACAGGATTAACAGTGGAC | + |
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Preference number: 5 (lower is better) Translates to: SSSCSCSTLKLCCQP*RNSGTNTLTGLTVD Trigger: GTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCTGAATTCCTTCACGGTTGGCAACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS CCA 90 bp | AACTCCTGTATTTCTCTCTCCTCTTCAAAAACCATTCCTGCACTGTaGCTTTACTCACACCCATGGATCTTGCCAGACACTTTGCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: NSCISLSSSKTIPAL*LYSHPWILPDTLPL Trigger: CAGAGGCAAAGTGTCTGGCAAGATCCATGGGTGTGAGTAAAGCCACAGTGCAGGAATGGTTTTTGAAGAGGAGAGAGAAATACAGGAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS GCA 72 bp | AAATCCCCCATGGAATCAGGGACTGGCTCCTCTGGCTaGTTCTCCTTCTCCTGGGCACAGCCAGTGGCACCA | + |
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Preference number: 6 (lower is better) Translates to: KSPMESGTGSSG*FSFSWAQPVAP Trigger: TGGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGGGATTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000115169.4 ENSMUST00000183888.3 |
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| CDS CAA 90 bp | CTGCTTCTCCTTCTCCTGGGCACAGCCAGTGGCACCAAGGTCCTCTaGGTTGTTGTTATCCATGAGGTCGGCTACTGGCGCAGCAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: LLLLLLGTASGTKVL*VVVIHEVGYWRSKP Trigger: GGGCTTGCTGCGCCAGTAGCCGACCTCATGGATAACAACAACCAAGAGGACCTTGGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS CAA 72 bp | TCCTGGGCACAGCCAGTGGCACCAAGGTCCTCTTGGTaGTTGTTATCCATGAGGTCGGCTACTGGCGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SWAQPVAPRSSW*LLSMRSATGAA Trigger: TGCTGCGCCAGTAGCCGACCTCATGGATAACAACAACCAAGAGGACCTTGGTGCCACTGGCTGTGCCCAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS CAA 72 bp | CTTCTCCTGGGCACAGCCAGTGGCACCAAGGTCCTCTaGGTTGTTGTTATCCATGAGGTCGGCTACTGGCGC | + |
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Preference number: 6 (lower is better) Translates to: LLLGTASGTKVL*VVVIHEVGYWR Trigger: GCGCCAGTAGCCGACCTCATGGATAACAACAACCAAGAGGACCTTGGTGCCACTGGCTGTGCCCAGGAGAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS CCA 72 bp | TTCTCCTGGGCACAGCCAGTGGCACCAAGGTCCTCTTaGTTGTTGTTATCCATGAGGTCGGCTACTGGCGCA | + |
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Preference number: 6 (lower is better) Translates to: FSWAQPVAPRSS*LLLSMRSATGA Trigger: TGCGCCAGTAGCCGACCTCATGGATAACAACAACCAAGAGGACCTTGGTGCCACTGGCTGTGCCCAGGAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS GCA 72 bp | CTCCTGTATTTCTCTCTCCTCTTCAAAAACCATTCCTaGACTGTGGCTTTACTCACACCCATGGATCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: LLYFSLLFKNHS*TVALLTPMDLA Trigger: GGCAAGATCCATGGGTGTGAGTAAAGCCACAGTGCAGGAATGGTTTTTGAAGAGGAGAGAGAAATACAGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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| CDS CCA 72 bp | ATTTCTCTCTCCTCTTCAAAAACCATTCCTGCACTGTaGCTTTACTCACACCCATGGATCTTGCCAGACACT | + |
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Preference number: 6 (lower is better) Translates to: ISLSSSKTIPAL*LYSHPWILPDT Trigger: AGTGTCTGGCAAGATCCATGGGTGTGAGTAAAGCCACAGTGCAGGAATGGTTTTTGAAGAGGAGAGAGAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115169.4 |
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