Pregenerated sensors for RHOX2E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096788

Ensembl transcript IDs: ENSMUST00000072167.10, ENSMUST00000184746.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	ACTTTGGCGGGAAAACATCGTCTGGCTATGGCGCCTTaGGGAAGCGTGGATCCCTGGGGCTTCTCCATAGCC	+
Preference number: 3 (lower is better) Translates to: TLAGKHRLAMAP*GSVDPWGFSIA Trigger: GGCTATGGAGAAGCCCCAGGGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTCCCGCCAAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072167.10
CDS TCA 90 bp	AGGCCCACCTGCACTTATTTCTCCTGCTCTGTATCCTTCCGCTGCTaGGGCTCCCGACCCAGGCAGGCCCCGTCCACTCTCTCCCTCGTT	+
Preference number: 5 (lower is better) Translates to: RPTCTYFSCSVSFRC*GSRPRQAPSTLSLV Trigger: AACGAGGGAGAGAGTGGACGGGGCCTGCCTGGGTCGGGAGCCTCAGCAGCGGAAGGATACAGAGCAGGAGAAATAAGTGCAGGTGGGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072167.10 ENSMUST00000184746.2
CDS-3UTR CAA 90 bp	AGGAAGCGTGGATCCCTGGGGCTTCTCCATAGCCTTCACAGAGAGATGCTGTGGGGCACCAAGGTCCTCTaGGTTGCTGTTATCCATGAG	+
Preference number: 5 (lower is better) Translates to: RKRGSLGLLHSLHREMLWGTKVL*VAVIHE Trigger: CTCATGGATAACAGCAACCAAGAGGACCTTGGTGCC...CCACAGCATCTCTCTGTGAAGGCTATGGAGAAGCCCCAGGGATCCACGCTTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000072167.10 ENSMUST00000184746.2
CDS-3UTR CAA 90 bp	AGGAAGCGTGGATCCCTGGGGCTTCTCCATAGCCTTCACAGAGAGATGCTGTGGTGTAGTTGCAGCACATaGAAGCTCTGTTGCCAACCG	+
Preference number: 5 (lower is better) Translates to: RKRGSLGLLHSLHREMLWCSCST*KLCCQP Trigger: CGGTTGGCAACAGAGCTTCAATGTGCTGCAACTACA...CCACAGCATCTCTCTGTGAAGGCTATGGAGAAGCCCCAGGGATCCACGCTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000072167.10 ENSMUST00000184746.2
CDS-3UTR CAA 90 bp	AGGAAGCGTGGATCCCTGGGGCTTCTCCATAGCCTTCACAGAGAGATGCTGTGGTCCTTTCTGTTTGATTaGTCCACCTGCACTGTGGCT	+
Preference number: 5 (lower is better) Translates to: RKRGSLGLLHSLHREMLWSFLFD*STCTVA Trigger: AGCCACAGTGCAGGTGGACAAATCAAACAGAAAGGA...CCACAGCATCTCTCTGTGAAGGCTATGGAGAAGCCCCAGGGATCCACGCTTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184746.2
CDS-3UTR CAA 90 bp	AGGACCTCTGAGCATTTACAGCCTCTTATAACTCCTGTATTTTTCTCTCCTCTTGGCACCAAGGTCCTCTaGGTTGCTGTTATCCATGAG	+
Preference number: 5 (lower is better) Translates to: RTSEHLQPLITPVFFSPLGTKVL*VAVIHE Trigger: CTCATGGATAACAGCAACCAAGAGGACCTTGGTGCC...AAGAGGAGAGAAAAATACAGGAGTTATAAGAGGCTGTAAATGCTCAGAGGTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184746.2
CDS-3UTR CAA 90 bp	AGGACCTCTGAGCATTTACAGCCTCTTATAACTCCTGTATTTTTCTCTCCTCTTTGTAGTTGCAGCACATaGAAGCTCTGTTGCCAACCG	+
Preference number: 5 (lower is better) Translates to: RTSEHLQPLITPVFFSPLCSCST*KLCCQP Trigger: CGGTTGGCAACAGAGCTTCAATGTGCTGCAACTACA...AAGAGGAGAGAAAAATACAGGAGTTATAAGAGGCTGTAAATGCTCAGAGGTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184746.2
CDS CAA 72 bp	TGGAAGATGCTCTCCAGCTCTTGTAGTTGCAGCACATaGAAGCTCTGTTGCCAACCGTGGCGGAATTCGGGC	+
Preference number: 6 (lower is better) Translates to: WKMLSSSCSCST*KLCCQPWRNSG Trigger: GCCCGAATTCCGCCACGGTTGGCAACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGAGAGCATCTTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000072167.10 ENSMUST00000184746.2

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