Pregenerated sensors for RHOX2D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095698Ensembl transcript IDs: ENSMUST00000115179.4
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTGAGCCTTGCTTCTCCTTCTCCTaGGCACAGCCAGTGGCACTA | + |
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Preference number: 4 (lower is better) Translates to: PQPSQRDAPECRKRTSEPCFSFS*AQPVAL Trigger: TAGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCA...AGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS-3UTR TCA 90 bp | CCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTGAGCCTGTAGTTGCAGCACATTaGAGCTCTGTTGCCAACTGT | + |
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Preference number: 4 (lower is better) Translates to: PQPSQRDAPECRKRTSEPVVAAH*SSVANC Trigger: ACAGTTGGCAACAGAGCTTCAATGTGCTGCAACTAC...AGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS-3UTR CCA 90 bp | CCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTGAGCCTGCACTAAGGTCCTCTTaGTTGCTCTTATCCATGAGG | + |
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Preference number: 4 (lower is better) Translates to: PQPSQRDAPECRKRTSEPALRSS*LLLSMR Trigger: CCTCATGGATAAGAGCAACCAAGAGGACCTTAGTGC...AGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS-3UTR GCA 90 bp | GCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTCACACCCATGGATTTTaGCAGACGTTTTGCCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: ASPQPSQRDAPECRKRTSHTHGF*QTFCLC Trigger: ACAGAGGCAAAACGTCTGGCAAAATCCATGGGTGTG...AGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS-3UTR TCA 90 bp | GCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTGTAGTGCTGATGTATTaGTTGCACTGGAAGATGCTC | + |
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Preference number: 4 (lower is better) Translates to: ASPQPSQRDAPECRKRTSVVLMY*LHWKML Trigger: GAGCATCTTCCAGTGCAATCAATACATCAGCACTAC...AGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS CCA 90 bp | TGCTTCTCCTTCTCCTGGGCACAGCCAGTGGCACTAAGGTCCTCTTaGTTGCTCTTATCCATGAGGTCGGCTACTGGCGAAGCAAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: CFSFSWAQPVALRSS*LLLSMRSATGEASP Trigger: TGGGCTTGCTTCGCCAGTAGCCGACCTCATGGATAAGAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS GCA 90 bp | ACATTTTCCAAATCCCCCATGGAATCAGGGACTGGCTCCTCTGGCTaGTTCTCCTTCTCCTGGGCACAGCCAGTGGCACTAAGGTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: TFSKSPMESGTGSSG*FSFSWAQPVALRSS Trigger: AGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGGGATTTGGAAAATGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS-3UTR CAA 90 bp | GCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTCTAAGGTCCTCTTGGTaGCTCTTATCCATGAGGTCG | + |
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Preference number: 5 (lower is better) Translates to: ASPQPSQRDAPECRKRTSLRSSW*LLSMRS Trigger: CGACCTCATGGATAAGAGCAACCAAGAGGACCTTAG...AGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS-3UTR CAA 90 bp | GCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTGGCACTAAGGTCCTCTaGGTTGCTCTTATCCATGAG | + |
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Preference number: 5 (lower is better) Translates to: ASPQPSQRDAPECRKRTSGTKVL*VALIHE Trigger: CTCATGGATAAGAGCAACCAAGAGGACCTTAGTGCC...AGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS-3UTR CAA 90 bp | GCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTTGTAGTTGCAGCACATaGAAGCTCTGTTGCCAACTG | + |
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Preference number: 5 (lower is better) Translates to: ASPQPSQRDAPECRKRTSCSCST*KLCCQL Trigger: CAGTTGGCAACAGAGCTTCAATGTGCTGCAACTACA...AGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS TCA 90 bp | TTCGGGCACCAACACTCTCACAGGATTAACAGTGGACCACGGCCCTaGCATAGGCTTTACATTTTCCAAATCCCCCATGGAATCAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: FGHQHSHRINSGPRP*HRLYIFQIPHGIRD Trigger: GTCCCTGATTCCATGGGGGATTTGGAAAATGTAAAGCCTATGTCAGGGCCGTGGTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCCGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS GCA 90 bp | CTGCACTGTGGCTTCACTCACACCCATGGATTTTGCCAGACGTTTTaGCTCTGTAGTGCTGATGTATTGATTGCACTGGAAGATGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: LHCGFTHTHGFCQTF*LCSADVLIALEDAL Trigger: GAGAGCATCTTCCAGTGCAATCAATACATCAGCACTACAGAGGCAAAACGTCTGGCAAAATCCATGGGTGTGAGTGAAGCCACAGTGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS CAA 90 bp | CTGCTTCTCCTTCTCCTGGGCACAGCCAGTGGCACTAAGGTCCTCTaGGTTGCTCTTATCCATGAGGTCGGCTACTGGCGAAGCAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: LLLLLLGTASGTKVL*VALIHEVGYWRSKP Trigger: GGGCTTGCTTCGCCAGTAGCCGACCTCATGGATAAGAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS GCA 72 bp | AAATCCCCCATGGAATCAGGGACTGGCTCCTCTGGCTaGTTCTCCTTCTCCTGGGCACAGCCAGTGGCACTA | + |
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Preference number: 6 (lower is better) Translates to: KSPMESGTGSSG*FSFSWAQPVAL Trigger: TAGTGCCACTGGCTGTGCCCAGGAGAAGGAGAAGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGGGATTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS CAA 72 bp | TCCTGGGCACAGCCAGTGGCACTAAGGTCCTCTTGGTaGCTCTTATCCATGAGGTCGGCTACTGGCGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: SWAQPVALRSSW*LLSMRSATGEA Trigger: TGCTTCGCCAGTAGCCGACCTCATGGATAAGAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS CAA 72 bp | CTTCTCCTGGGCACAGCCAGTGGCACTAAGGTCCTCTaGGTTGCTCTTATCCATGAGGTCGGCTACTGGCGA | + |
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Preference number: 6 (lower is better) Translates to: LLLGTASGTKVL*VALIHEVGYWR Trigger: TCGCCAGTAGCCGACCTCATGGATAAGAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS CCA 72 bp | TTCTCCTGGGCACAGCCAGTGGCACTAAGGTCCTCTTaGTTGCTCTTATCCATGAGGTCGGCTACTGGCGAA | + |
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Preference number: 6 (lower is better) Translates to: FSWAQPVALRSS*LLLSMRSATGE Trigger: TTCGCCAGTAGCCGACCTCATGGATAAGAGCAACCAAGAGGACCTTAGTGCCACTGGCTGTGCCCAGGAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS TCA 72 bp | GGAAGATGCTCTCCAGCTCTTGTAGTTGCAGCACATTaGAGCTCTGTTGCCAACTGTAGCGGAATTCGGGCA | + |
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Preference number: 6 (lower is better) Translates to: GRCSPALVVAAH*SSVANCSGIRA Trigger: TGCCCGAATTCCGCTACAGTTGGCAACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGAGAGCATCTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS GCA 72 bp | TTCCTGCACTGTGGCTTCACTCACACCCATGGATTTTaGCAGACGTTTTGCCTCTGTAGTGCTGATGTATTG | + |
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Preference number: 6 (lower is better) Translates to: FLHCGFTHTHGF*QTFCLCSADVL Trigger: CAATACATCAGCACTACAGAGGCAAAACGTCTGGCAAAATCCATGGGTGTGAGTGAAGCCACAGTGCAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS GCA 72 bp | GGCTTCACTCACACCCATGGATTTTGCCAGACGTTTTaGCTCTGTAGTGCTGATGTATTGATTGCACTGGAA | + |
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Preference number: 6 (lower is better) Translates to: GFTHTHGFCQTF*LCSADVLIALE Trigger: TTCCAGTGCAATCAATACATCAGCACTACAGAGGCAAAACGTCTGGCAAAATCCATGGGTGTGAGTGAAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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| CDS GCA 72 bp | CTCCTGTATTTCTCTCTCCTCTTCAAAAACCATTCCTaGACTGTGGCTTCACTCACACCCATGGATTTTGCC | + |
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Preference number: 6 (lower is better) Translates to: LLYFSLLFKNHS*TVASLTPMDFA Trigger: GGCAAAATCCATGGGTGTGAGTGAAGCCACAGTGCAGGAATGGTTTTTGAAGAGGAGAGAGAAATACAGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115179.4 |
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