Pregenerated sensors for RHOX2C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079637Ensembl transcript IDs: ENSMUST00000115190.11, ENSMUST00000173574.2, ENSMUST00000183655.2, ENSMUST00000184688.8
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTAACAGGGCTTTGGCGGCAAAACATCGTCTGGCTATGGCGCCTTaGGGAAGCGTGGATCCCTGGGGCTTCTCCATAGCCTTCACAGAG | + |
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Preference number: 1 (lower is better) Translates to: CNRALAAKHRLAMAP*GSVDPWGFSIAFTE Trigger: CTCTGTGAAGGCTATGGAGAAGCCCCAGGGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCGCCAAAGCCCTGTTACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115190.11 ENSMUST00000183655.2 |
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| 3UTR-3UTR GCA 90 bp | CGGCAAAACATCGTCTGGCTATGGCGCCTTGAGGAAGCGTGGATCCCTGGGGCTGCCTTCACAGAGAGATaGTGTGGGAAGCAGGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: RQNIVWLWRLEEAWIPGAAFTER*CGKQEE Trigger: CTCTTCCTGCTTCCCACAGCATCTCTCTGTGAAGGC...AGCCCCAGGGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115190.11 ENSMUST00000183655.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTGGCGGCAAAACATCGTCTGGCTATGGCGCCTTGAGGAAGCGTGGATCCCTGCCTTCACAGAGAGATaGTGTGGGAAGCAGGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: LWRQNIVWLWRLEEAWIPAFTER*CGKQEE Trigger: CTCTTCCTGCTTCCCACAGCATCTCTCTGTGAAGGC...AGGGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCGCCAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115190.11 ENSMUST00000183655.2 |
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| 3UTR-3UTR TCA 90 bp | GGCTTTGGCGGCAAAACATCGTCTGGCTATGGCGCCTTGAGGAAGCGTGGATCCCAGGAAGAGGACCTCTaGGCATTTACAGCCTCTTAT | + |
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Preference number: 2 (lower is better) Translates to: GFGGKTSSGYGALRKRGSQEEDL*AFTASY Trigger: ATAAGAGGCTGTAAATGCTCAGAGGTCCTCTTCCTG...GGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCGCCAAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183655.2 |
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| 3UTR-3UTR CCA 90 bp | TTTTTAAGGAAGGGCACAAACCTCGAGGAAGTAGAGATGCAGAAATTACCTTTGGTAGAAGCCAAGTTGTaGGGAGCAAGAAAATATCTC | + |
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Preference number: 2 (lower is better) Translates to: FLRKGTNLEEVEMQKLPLVEAKL*GARKYL Trigger: GAGATATTTTCTTGCTCCCCACAACTTGGCTTCTAC...CAAAGGTAATTTCTGCATCTCTACTTCCTCGAGGTTTGTGCCCTTCCTTAAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173574.2 |
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| 3UTR TCA 72 bp | GCTTTGGCGGCAAAACATCGTCTGGCTATGGCGCCTTaGGGAAGCGTGGATCCCTGGGGCTTCTCCATAGCC | + |
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Preference number: 3 (lower is better) Translates to: ALAAKHRLAMAP*GSVDPWGFSIA Trigger: GGCTATGGAGAAGCCCCAGGGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCGCCAAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115190.11 ENSMUST00000183655.2 |
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| 3UTR-3UTR CAA 90 bp | GTGATCACCCTGAGGTGCCCTGGTGAGAGGAGTTTGGTGCTGGGATGTGTGGGGGTAACTCTGGAGTCCTaGAGGAAAATGTTTGTAGAG | + |
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Preference number: 3 (lower is better) Translates to: VITLRCPGERSLVLGCVGVTLES*RKMFVE Trigger: CTCTACAAACATTTTCCTCAAGGACTCCAGAGTTAC...CCCCACACATCCCAGCACCAAACTCCTCTCACCAGGGCACCTCAGGGTGATCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173574.2 |
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| 3UTR CCA 72 bp | CCGAGGGGATGGTGGTCAACTGTAGAAGCCAAGTTGTaGGGAGCAAGAAAATATCTCCCAGTAACTCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: PRGWWSTVEAKL*GARKYLPVTLE Trigger: CTCCAGAGTTACTGGGAGATATTTTCTTGCTCCCCACAACTTGGCTTCTACAGTTGACCACCATCCCCTCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173574.2 |
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| 3UTR-3UTR CAA 90 bp | AAGGAAGGGCACAAACCTCGAGGAAGTAGAGATGCAGAAATTACCTTTGAAGCTACTGTAGAAGCCAAGTaGTGGGGAGCAAGAAAATAT | + |
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Preference number: 3 (lower is better) Translates to: KEGHKPRGSRDAEITFEATVEAK*WGARKY Trigger: ATATTTTCTTGCTCCCCACAACTTGGCTTCTACAGT...AGCTTCAAAGGTAATTTCTGCATCTCTACTTCCTCGAGGTTTGTGCCCTTCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173574.2 |
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| CDS-3UTR TCA 90 bp | CTTTGGCGGCAAAACATCGTCTGGCTATGGCGCCTTGAGGAAGCGTGGATCCCTGTATCCTTCCGCTGCTaGGGCTCCCGACCCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LWRQNIVWLWRLEEAWIPVSFRC*GSRPRQ Trigger: CTGCCTGGGTCGGGAGCCTCAGCAGCGGAAGGATAC...AGGGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCGCCAAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115190.11 |
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| 3UTR CAA 72 bp | GGCTTTGGCGGCAAAACATCGTCTGGCTATGGCGCCTaGAGGAAGCGTGGATCCCTGGGGCTTCTCCATAGC | + |
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Preference number: 4 (lower is better) Translates to: GFGGKTSSGYGA*RKRGSLGLLHS Trigger: GCTATGGAGAAGCCCCAGGGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCGCCAAAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115190.11 ENSMUST00000183655.2 |
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| CDS-3UTR GCA 90 bp | CGGCAAAACATCGTCTGGCTATGGCGCCTTGAGGAAGCGTGGATCCCTGGGGCTTCCAGCTCTTGTAGTTaGAGCACATTGAAGCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: RQNIVWLWRLEEAWIPGASSSCS*STLKLC Trigger: ACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGA...AGCCCCAGGGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115190.11 ENSMUST00000183655.2 |
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| CDS-3UTR GCA 90 bp | GGCTTTGGCGGCAAAACATCGTCTGGCTATGGCGCCTTGAGGAAGCGTGGATCCTCCAGCTCTTGTAGTTaGAGCACATTGAAGCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: GFGGKTSSGYGALRKRGSSSSCS*STLKLC Trigger: ACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGA...GGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCGCCAAAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115190.11 ENSMUST00000183655.2 |
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| CDS-3UTR GCA 90 bp | CAGGGCTTTGGCGGCAAAACATCGTCTGGCTATGGCGCCTTGAGGAAGCGTGGATTCAAAAACCATTCCTaGACTGTGGCTTCACTCACT | + |
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Preference number: 4 (lower is better) Translates to: QGFGGKTSSGYGALRKRGFKNHS*TVASLT Trigger: AGTGAGTGAAGCCACAGTGCAGGAATGGTTTTTGAA...TCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCGCCAAAGCCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000115190.11 |
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| CDS-3UTR GCA 90 bp | GATGCAGAAATTACCTTTGAAGCTGCATCTCAGCTGCCTTCTCTGACCTTATTGCCCGCATTGATTCCCTaGACTGTGGCTTCACTCACT | + |
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Preference number: 4 (lower is better) Translates to: DAEITFEAASQLPSLTLLPALIP*TVASLT Trigger: AGTGAGTGAAGCCACAGTGCAGGGAATCAATGCGGG...CAATAAGGTCAGAGAAGGCAGCTGAGATGCAGCTTCAAAGGTAATTTCTGCATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173574.2 |
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| 3UTR CAA 72 bp | TTTGAAGCTGCATCTCAGCTGCCTTCTCTGACCTTATaGAATTTTCTTCCTACCGAGGGGATGGTGGTCAAC | + |
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Preference number: 4 (lower is better) Translates to: FEAASQLPSLTL*NFLPTEGMVVN Trigger: GTTGACCACCATCCCCTCGGTAGGAAGAAAATTCAATAAGGTCAGAGAAGGCAGCTGAGATGCAGCTTCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173574.2 |
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| CDS-3UTR GCA 90 bp | GTCAACTGTAGAAGCCAAGTTGTGGGGAGCAAGAAAATATCTCCCAGTAACTCTTCCAGCTCTTGTAGTTaGAGCACATTGAAGCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: VNCRSQVVGSKKISPSNSSSSCS*STLKLC Trigger: ACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGA...AGAGTTACTGGGAGATATTTTCTTGCTCCCCACAACTTGGCTTCTACAGTTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173574.2 |
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| CDS-3UTR CAA 90 bp | TTTGGCGGCAAAACATCGTCTGGCTATGGCGCCTTGAGGAAGCGTGGATCCCTGGGCACCAAGGTCCTCTaGGTTGCTGTTATCCATGNN | + |
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Preference number: 5 (lower is better) Translates to: FGGKTSSGYGALRKRGSLGTKVL*VAVIHX Trigger: NNCATGGATAACAGCAACCAAGAGGACCTTGGTGCC...CAGGGATCCACGCTTCCTCAAGGCGCCATAGCCAGACGATGTTTTGCCGCCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183655.2 |
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| CDS GCA 90 bp | CGCATTGATTCCCTGCACTGTGGCTTCACTCACTCCCATGGATCTTaGCAGGCGATTTGCCTCCTTAGTGCTGATGTAGTGATTGCACTG | + |
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Preference number: 5 (lower is better) Translates to: RIDSLHCGFTHSHGS*QAICLLSADVVIAL Trigger: CAGTGCAATCACTACATCAGCACTAAGGAGGCAAATCGCCTGGCAAGATCCATGGGAGTGAGTGAAGCCACAGTGCAGGGAATCAATGCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173574.2 |
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| CDS CCA 90 bp | TCCAGCTCTTGTAGTTGCAGCACATTGAAGCTCTGTTGCCAACCGTaGCGGAATTTGGGCACCAACACTCTCACAGGATTAACAGTGGAC | + |
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Preference number: 5 (lower is better) Translates to: SSSCSCSTLKLCCQP*RNLGTNTLTGLTVD Trigger: GTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCCAAATTCCGCCACGGTTGGCAACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115190.11 ENSMUST00000173574.2 ENSMUST00000183655.2 ENSMUST00000184688.8 |
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| CDS CCA 72 bp | TTCTCCTGGTCACAGCCAGTGGCACCAAGGTCCTCTTaGTTGCTGTTATCCATGAGGTCGGCTACTGGCGCA | + |
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Preference number: 6 (lower is better) Translates to: FSWSQPVAPRSS*LLLSMRSATGA Trigger: TGCGCCAGTAGCCGACCTCATGGATAACAGCAACCAAGAGGACCTTGGTGCCACTGGCTGTGACCAGGAGAA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115190.11 ENSMUST00000184688.8 |
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| CDS CAA 90 bp | TGTAGTTGCAGCACATTGAAGCTCTGTTGCCAACCGTGGCGGAATTaGGGCACCAACACTCTCACAGGATTAACAGTGGACCACGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: CSCSTLKLCCQPWRN*GTNTLTGLTVDHGP Trigger: CGGGCCGTGGTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCCAAATTCCGCCACGGTTGGCAACAGAGCTTCAATGTGCTGCAACTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115190.11 ENSMUST00000173574.2 ENSMUST00000183655.2 ENSMUST00000184688.8 |
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| CDS GCA 72 bp | TCCCTGCACTGTGGCTTCACTCACTCCCATGGATCTTaGCAGGCGATTTGCCTCCTTAGTGCTGATGTAGTG | + |
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Preference number: 6 (lower is better) Translates to: SLHCGFTHSHGS*QAICLLSADVV Trigger: CACTACATCAGCACTAAGGAGGCAAATCGCCTGGCAAGATCCATGGGAGTGAGTGAAGCCACAGTGCAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173574.2 |
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| CDS CAA 72 bp | TGGAAGATGCTCTCCAGCTCTTGTAGTTGCAGCACATaGAAGCTCTGTTGCCAACCGTGGCGGAATTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: WKMLSSSCSCST*KLCCQPWRNLG Trigger: GCCCAAATTCCGCCACGGTTGGCAACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGAGAGCATCTTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115190.11 ENSMUST00000173574.2 ENSMUST00000183655.2 ENSMUST00000184688.8 |
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| CDS CAA 72 bp | AGCACATTGAAGCTCTGTTGCCAACCGTGGCGGAATTaGGGCACCAACACTCTCACAGGATTAACAGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: STLKLCCQPWRN*GTNTLTGLTVD Trigger: GTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCCAAATTCCGCCACGGTTGGCAACAGAGCTTCAATGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000115190.11 ENSMUST00000173574.2 ENSMUST00000183655.2 ENSMUST00000184688.8 |
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