Pregenerated sensors for RHOX2B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079638

Ensembl transcript IDs: ENSMUST00000115191.7

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGGACCACGGCCCGGACACATGCTTTACATTTTCCAAATCTCCCATaGAATCAGGGACTGGCTCCTCTGGCTGCTTCTCCTTCTCCTGGT	+
Preference number: 5 (lower is better) Translates to: WTTARTHALHFPNLP*NQGLAPLAASPSPG Trigger: ACCAGGAGAAGGAGAAGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGAGATTTGGAAAATGTAAAGCATGTGTCCGGGCCGTGGTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115191.7
CDS CCA 72 bp	GTCCTCTTGGTTGCTGTTATCCATGAGGTCGGCTACTaGCGCAGCAGGCCCACCTGCACTTATTTCTCCTGC	+
Preference number: 6 (lower is better) Translates to: VLLVAVIHEVGY*RSRPTCTYFSC Trigger: GCAGGAGAAATAAGTGCAGGTGGGCCTGCTGCGCCAGTAGCCGACCTCATGGATAACAGCAACCAAGAGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115191.7
CDS GCA 72 bp	CTCACAGGATTAACAGTGGACCACGGCCCGGACACATaGTTTACATTTTCCAAATCTCCCATGGAATCAGGG	+
Preference number: 6 (lower is better) Translates to: LTGLTVDHGPDT*FTFSKSPMESG Trigger: CCCTGATTCCATGGGAGATTTGGAAAATGTAAAGCATGTGTCCGGGCCGTGGTCCACTGTTAATCCTGTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000115191.7

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