RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RHOX2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051827

Ensembl transcript IDs: ENSMUST00000063340.12, ENSMUST00000173650.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCGGCACAACATCGTCTGTCTACAGTGACTTGAGCATGGGTGGCTaGCTGGGGCTTCTCCACAGCCTTCACAGAGAGATGCTCCGGAAT +
Preference number: 1 (lower is better)
Translates to: GGTTSSVYSDLSMGG*LGLLHSLHREMLRN
Trigger: ATTCCGGAGCATCTCTCTGTGAAGGCTGTGGAGAAGCCCCAGGCAGCCACCCATGCTCAAGTCACTGTAGACAGACGATGTTGTGCCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063340.12
3UTR TCA 90 bp TGTAACAGGGCTTTGGCGGCACAACATCGTCTGTCTACAGTGACTTaGGCATGGGTGGCTGCCTGGGGCTTCTCCACAGCCTTCACAGAG +
Preference number: 1 (lower is better)
Translates to: CNRALAAQHRLSTVT*AWVAAWGFSTAFTE
Trigger: CTCTGTGAAGGCTGTGGAGAAGCCCCAGGCAGCCACCCATGCTCAAGTCACTGTAGACAGACGATGTTGTGCCGCCAAAGCCCTGTTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063340.12
CDS-3UTR CCA 90 bp TCACAGAGAGATGCTCCGGAATGCAGGAAGAGGACCTCTGAGCCTTTACAGCCTCATGAGGTCGGCTACTaGCGCAGCAGGCCCACCTGC +
Preference number: 4 (lower is better)
Translates to: SQRDAPECRKRTSEPLQPHEVGY*RSRPTC
Trigger: GCAGGTGGGCCTGCTGCGCCAGTAGCCGACCTCATG...AGGCTGTAAAGGCTCAGAGGTCCTCTTCCTGCATTCCGGAGCATCTCTCTGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173650.2
CDS-3UTR CCA 90 bp AGGACCTCTGAGCCTTTACAGCCTCTTATAACTCCTGTATTTCTCTCTCCTCTTTGTCCACCTGCACTGTaGCTTCACTCACTCCCATGG +
Preference number: 4 (lower is better)
Translates to: RTSEPLQPLITPVFLSPLCPPAL*LHSLPW
Trigger: CCATGGGAGTGAGTGAAGCCACAGTGCAGGTGGACA...AAGAGGAGAGAGAAATACAGGAGTTATAAGAGGCTGTAAAGGCTCAGAGGTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173650.2
CDS-3UTR CCA 90 bp AGGACCTCTGAGCCTTTACAGCCTCTTATAACTCCTGTATTTCTCTCTCCTCTTGCACCAAGGTCCTCTTaGTTGCTGTTATCCATGAGG +
Preference number: 4 (lower is better)
Translates to: RTSEPLQPLITPVFLSPLAPRSS*LLLSMR
Trigger: CCTCATGGATAACAGCAACCAAGAGGACCTTGGTGC...AAGAGGAGAGAGAAATACAGGAGTTATAAGAGGCTGTAAAGGCTCAGAGGTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173650.2
CDS-3UTR CCA 90 bp AGGACCTCTGAGCCTTTACAGCCTCTTATAACTCCTGTATTTCTCTCTCCTCTTCTTCACTCACTCCCATaGATCTTGCCAGGCGATTTG +
Preference number: 4 (lower is better)
Translates to: RTSEPLQPLITPVFLSPLLHSLP*ILPGDL
Trigger: CAAATCGCCTGGCAAGATCCATGGGAGTGAGTGAAG...AAGAGGAGAGAGAAATACAGGAGTTATAAGAGGCTGTAAAGGCTCAGAGGTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173650.2
CDS TCA 90 bp AGGCCCACCTGCACTTATTTCTCCTGCTCTGTATCCTTCCGCTGCTaGGGCTCCCGACCCAGGCAGGCCCCGTCCACTCTCTCCCTCATT +
Preference number: 5 (lower is better)
Translates to: RPTCTYFSCSVSFRC*GSRPRQAPSTLSLI
Trigger: AATGAGGGAGAGAGTGGACGGGGCCTGCCTGGGTCGGGAGCCTCAGCAGCGGAAGGATACAGAGCAGGAGAAATAAGTGCAGGTGGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063340.12
ENSMUST00000173650.2
CDS CCA 90 bp GGCACCAAGGTCCTCTTGGTTGCTGTTATCCATGAGGTCGGCTACTaGCGCAGCAGGCCCACCTGCACTTATTTCTCCTGCTCTGTATCC +
Preference number: 5 (lower is better)
Translates to: GTKVLLVAVIHEVGY*RSRPTCTYFSCSVS
Trigger: GGATACAGAGCAGGAGAAATAAGTGCAGGTGGGCCTGCTGCGCCAGTAGCCGACCTCATGGATAACAGCAACCAAGAGGACCTTGGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063340.12
ENSMUST00000173650.2
CDS CCA 90 bp TGGACCACGGCCCGGACACACGCTTTACATTTTCCAAATCTCCCATaGAATCAGGGACTGGCTCCTCTGGCTGCTTCTCCTTCTCCTGGT +
Preference number: 5 (lower is better)
Translates to: WTTARTHALHFPNLP*NQGLAPLAASPSPG
Trigger: ACCAGGAGAAGGAGAAGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGAGATTTGGAAAATGTAAAGCGTGTGTCCGGGCCGTGGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063340.12
ENSMUST00000173650.2
CDS GCA 90 bp ACATTTTCCAAATCTCCCATGGAATCAGGGACTGGCTCCTCTGGCTaGTTCTCCTTCTCCTGGTCACAGCCAGTGGCACCAAGGTCCTCT +
Preference number: 5 (lower is better)
Translates to: TFSKSPMESGTGSSG*FSFSWSQPVAPRSS
Trigger: AGAGGACCTTGGTGCCACTGGCTGTGACCAGGAGAAGGAGAAGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGAGATTTGGAAAATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063340.12
ENSMUST00000173650.2
CDS CCA 90 bp TCCAGCTCTTGTAGTTGCAGCACATTGAAGCTCTGTTGCCAACCGTaGCGGAATTCGGGCACCAACACTCTCACAGGATTAACAGTGGAC +
Preference number: 5 (lower is better)
Translates to: SSSCSCSTLKLCCQP*RNSGTNTLTGLTVD
Trigger: GTCCACTGTTAATCCTGTGAGAGTGTTGGTGCCCGAATTCCGCCACGGTTGGCAACAGAGCTTCAATGTGCTGCAACTACAAGAGCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063340.12
ENSMUST00000173650.2
CDS GCA 90 bp CAAAAACCATTCCTGCACTGTGGCTTCACTCACTCCCATGGATCTTaGCAGGCGATTTGCCTCCTTAGTGCTGATGTAGTGATTGCACTG +
Preference number: 5 (lower is better)
Translates to: QKPFLHCGFTHSHGS*QAICLLSADVVIAL
Trigger: CAGTGCAATCACTACATCAGCACTAAGGAGGCAAATCGCCTGGCAAGATCCATGGGAGTGAGTGAAGCCACAGTGCAGGAATGGTTTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063340.12
CDS CCA 90 bp AACTCCTGTATTTCTCTCTCCTCTTCAAAAACCATTCCTGCACTGTaGCTTCACTCACTCCCATGGATCTTGCCAGGCGATTTGCCTCCT +
Preference number: 5 (lower is better)
Translates to: NSCISLSSSKTIPAL*LHSLPWILPGDLPP
Trigger: AGGAGGCAAATCGCCTGGCAAGATCCATGGGAGTGAGTGAAGCCACAGTGCAGGAATGGTTTTTGAAGAGGAGAGAGAAATACAGGAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063340.12
CDS TCA 72 bp TGCACTTATTTCTCCTGCTCTGTATCCTTCCGCTGCTaGGGCTCCCGACCCAGGCAGGCCCCGTCCACTCTC +
Preference number: 6 (lower is better)
Translates to: CTYFSCSVSFRC*GSRPRQAPSTL
Trigger: GAGAGTGGACGGGGCCTGCCTGGGTCGGGAGCCTCAGCAGCGGAAGGATACAGAGCAGGAGAAATAAGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063340.12
ENSMUST00000173650.2
CDS GCA 72 bp ATCCATGAGGTCGGCTACTGGCGCAGCAGGCCCACCTaGACTTATTTCTCCTGCTCTGTATCCTTCCGCTGC +
Preference number: 6 (lower is better)
Translates to: IHEVGYWRSRPT*TYFSCSVSFRC
Trigger: GCAGCGGAAGGATACAGAGCAGGAGAAATAAGTGCAGGTGGGCCTGCTGCGCCAGTAGCCGACCTCATGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063340.12
ENSMUST00000173650.2
CDS GCA 72 bp AAATCTCCCATGGAATCAGGGACTGGCTCCTCTGGCTaGTTCTCCTTCTCCTGGTCACAGCCAGTGGCACCA +
Preference number: 6 (lower is better)
Translates to: KSPMESGTGSSG*FSFSWSQPVAP
Trigger: TGGTGCCACTGGCTGTGACCAGGAGAAGGAGAAGCAGCCAGAGGAGCCAGTCCCTGATTCCATGGGAGATTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063340.12
ENSMUST00000173650.2
CDS GCA 72 bp CACCTGCACTGTGGCTTCACTCACTCCCATGGATCTTaGCAGGCGATTTGCCTCCTTAGTGCTGATGTAGTG +
Preference number: 6 (lower is better)
Translates to: HLHCGFTHSHGS*QAICLLSADVV
Trigger: CACTACATCAGCACTAAGGAGGCAAATCGCCTGGCAAGATCCATGGGAGTGAGTGAAGCCACAGTGCAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173650.2
CDS GCA 72 bp GGCTTCACTCACTCCCATGGATCTTGCCAGGCGATTTaGCTCCTTAGTGCTGATGTAGTGATTGCACTGGAA +
Preference number: 6 (lower is better)
Translates to: GFTHSHGSCQAI*LLSADVVIALE
Trigger: TTCCAGTGCAATCACTACATCAGCACTAAGGAGGCAAATCGCCTGGCAAGATCCATGGGAGTGAGTGAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063340.12
ENSMUST00000173650.2
CDS GCA 72 bp CTCCTGTATTTCTCTCTCCTCTTCAAAAACCATTCCTaGACTGTGGCTTCACTCACTCCCATGGATCTTGCC +
Preference number: 6 (lower is better)
Translates to: LLYFSLLFKNHS*TVASLTPMDLA
Trigger: GGCAAGATCCATGGGAGTGAGTGAAGCCACAGTGCAGGAATGGTTTTTGAAGAGGAGAGAGAAATACAGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000063340.12