RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RHOX13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050197

Ensembl transcript IDs: ENSMUST00000152730.4

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp GCTTGGCATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATACTCCACTGTCGTGGCTaGTCGCCACTGCTGCCTGCG +
Preference number: 4 (lower is better)
Translates to: AWHWAQRLPICPLSTDQILHCRG*SPLLPA
Trigger: CGCAGGCAGCAGTGGCGAGCAGCCACGACAGTGGAG...TATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATGCCAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR CCA 90 bp GCTTGGCATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATATTGAGGTGGCGGCCATaGCCCCTGCCTGGGCTTCAG +
Preference number: 4 (lower is better)
Translates to: AWHWAQRLPICPLSTDQILRWRP*PLPGLQ
Trigger: CTGAAGCCCAGGCAGGGGCCATGGCCGCCACCTCAA...TATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATGCCAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR TCA 90 bp GGCATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATATGGCTACGGCCCCGGAATCTaGATAGCAGCGGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: GIGHRGCQFALCLLTKYGYGPGI*IAAAAG
Trigger: TCCTGCTGCCGCTGCTATTCAGATTCCGGGGCCGTA...GCCATATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR CCA 90 bp CATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATATGGCACGGCAGCAGGAACAGTTaGAGGAGCGGCAGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: HWAQRLPICPLSTDQIWHGSRNS*RSGSSS
Trigger: GCTGCTGCTGCCGCTCCTCCAACTGTTCCTGCTGCC...GTGCCATATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR CCA 90 bp GGCATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATATGGCGCCATGGCCCCTGCCTaGGCTTCAGCATTTGTTTCC +
Preference number: 4 (lower is better)
Translates to: GIGHRGCQFALCLLTKYGAMAPA*ASAFVS
Trigger: GGAAACAAATGCTGAAGCCCAGGCAGGGGCCATGGC...GCCATATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR CCA 90 bp GCTTGGCATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATACAGTGGCACAGCCTATaGCTCCTCCACTGTCGTGGC +
Preference number: 4 (lower is better)
Translates to: AWHWAQRLPICPLSTDQIQWHSL*LLHCRG
Trigger: GCCACGACAGTGGAGGAGCCATAGGCTGTGCCACTG...TATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATGCCAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR TCA 90 bp GCTTGGCATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATACGCCTCCTCAGGATCTaGAGTATCCTCGTCGCTGGT +
Preference number: 4 (lower is better)
Translates to: AWHWAQRLPICPLSTDQIRLLRI*SILVAG
Trigger: ACCAGCGACGAGGATACTTCAGATCCTGAGGAGGCG...TATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATGCCAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR TCA 90 bp CATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATATGGCACACCACACCTTCACTTTaGCCTCAGGCACATTCAAAG +
Preference number: 4 (lower is better)
Translates to: HWAQRLPICPLSTDQIWHTTPSL*PQAHSK
Trigger: CTTTGAATGTGCCTGAGGTCAAAGTGAAGGTGTGGT...GTGCCATATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR GCA 90 bp CTTGGCATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATATCATTTGTTTCCTCCTTaGACTCCACAATGTAGTAAT +
Preference number: 4 (lower is better)
Translates to: LGIGHRGCQFALCLLTKYHLFPP*TPQCSN
Trigger: ATTACTACATTGTGGAGTGCAAGGAGGAAACAAATG...ATATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATGCCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 90 bp CAGCCTATGGCTCCTCCACTGTCGTGGCTGCTCGCCACTGCTGCCTaGGCCACCTCCACAGCCCCTGGGGCCTCCTCGGTTGAGGTGGCG +
Preference number: 5 (lower is better)
Translates to: QPMAPPLSWLLATAA*ATSTAPGASSVEVA
Trigger: CGCCACCTCAACCGAGGAGGCCCCAGGGGCTGTGGAGGTGGCGCAGGCAGCAGTGGCGAGCAGCCACGACAGTGGAGGAGCCATAGGCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CCA 90 bp TCTTCAAACAGGCTTTCCATTTCCTCGACCTGCCACTGTGCGAAGTaGAATGGCGGTCCACGGCGACGACGGCGAACATGGCGGCGAGGG +
Preference number: 5 (lower is better)
Translates to: SSNRLSISSTCHCAK*NGGPRRRRRTWRRG
Trigger: CCCTCGCCGCCATGTTCGCCGTCGTCGCCGTGGACCGCCATTCCACTTCGCACAGTGGCAGGTCGAGGAAATGGAAAGCCTGTTTGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 90 bp CTGGGTCTCTTCAAACAGGCTTTCCATTTCCTCGACCTGCCACTGTaGGAAGTGGAATGGCGGTCCACGGCGACGACGGCGAACATGGCG +
Preference number: 5 (lower is better)
Translates to: LGLFKQAFHFLDLPL*EVEWRSTATTANMA
Trigger: CGCCATGTTCGCCGTCGTCGCCGTGGACCGCCATTCCACTTCGCACAGTGGCAGGTCGAGGAAATGGAAAGCCTGTTTGAAGAGACCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 90 bp TCCGGGTACTGGGTCTCTTCAAACAGGCTTTCCATTTCCTCGACCTaGCACTGTGCGAAGTGGAATGGCGGTCCACGGCGACGACGGCGA +
Preference number: 5 (lower is better)
Translates to: SGYWVSSNRLSISST*HCAKWNGGPRRRRR
Trigger: TCGCCGTCGTCGCCGTGGACCGCCATTCCACTTCGCACAGTGGCAGGTCGAGGAAATGGAAAGCCTGTTTGAAGAGACCCAGTACCCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR CAA 90 bp CATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATATGGCACCTGGGGCCTCCTCGGTaGAGGTGGCGGCCATGGCCC +
Preference number: 5 (lower is better)
Translates to: HWAQRLPICPLSTDQIWHLGPPR*RWRPWP
Trigger: GGGCCATGGCCGCCACCTCAACCGAGGAGGCCCCAG...GTGCCATATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CCA 90 bp TTCAAAGTTCTTGCAAGCTCTCCCCTTGTAAGCAAATCCGGGTACTaGGTCTCTTCAAACAGGCTTTCCATTTCCTCGACCTGCCACTGT +
Preference number: 5 (lower is better)
Translates to: FKVLASSPLVSKSGY*VSSNRLSISSTCHC
Trigger: ACAGTGGCAGGTCGAGGAAATGGAAAGCCTGTTTGAAGAGACCCAGTACCCGGATTTGCTTACAAGGGGAGAGCTTGCAAGAACTTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR CAA 90 bp GCTTGGCATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATATGCTTCGCTCTCCGATaGGTAAACCACACCTTCACT +
Preference number: 5 (lower is better)
Translates to: AWHWAQRLPICPLSTDQICFALR*VNHTFT
Trigger: AGTGAAGGTGTGGTTTACCAATCGGAGAGCGAAGCA...TATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATGCCAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS-3UTR CAA 90 bp CATTGGGCACAGAGGTTGCCAATTTGCCCTTTGTCTACTGACCAAATATGGCACAACCACACCTTCACTTaGACCTCAGGCACATTCAAA +
Preference number: 5 (lower is better)
Translates to: HWAQRLPICPLSTDQIWHNHTFT*TSGTFK
Trigger: TTTGAATGTGCCTGAGGTCAAAGTGAAGGTGTGGTT...GTGCCATATTTGGTCAGTAGACAAAGGGCAAATTGGCAACCTCTGTGCCCAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 72 bp TATGGCTCCTCCACTGTCGTGGCTGCTCGCCACTGCTaGCTGCGCCACCTCCACAGCCCCTGGGGCCTCCTC +
Preference number: 6 (lower is better)
Translates to: YGSSTVVAARHC*LRHLHSPWGLL
Trigger: GAGGAGGCCCCAGGGGCTGTGGAGGTGGCGCAGGCAGCAGTGGCGAGCAGCCACGACAGTGGAGGAGCCATA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 72 bp CAGTGGCACAGCCTATGGCTCCTCCACTGTCGTGGCTaGTCGCCACTGCTGCCTGCGCCACCTCCACAGCCC +
Preference number: 6 (lower is better)
Translates to: QWHSLWLLHCRG*SPLLPAPPPQP
Trigger: GGGCTGTGGAGGTGGCGCAGGCAGCAGTGGCGAGCAGCCACGACAGTGGAGGAGCCATAGGCTGTGCCACTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS TCA 72 bp CGCAGCCACCGAGGGAGCTGCCGCCTCCTCAGGATCTaGAGTATCCTCGTCGCTGGTGCTCGAGTCGTCATC +
Preference number: 6 (lower is better)
Translates to: RSHRGSCRLLRI*SILVAGARVVI
Trigger: GATGACGACTCGAGCACCAGCGACGAGGATACTTCAGATCCTGAGGAGGCGGCAGCTCCCTCGGTGGCTGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CCA 72 bp GCCTCCTCGGTTGAGGTGGCGGCCATGGCCCCTGCCTaGGCTTCAGCATTTGTTTCCTCCTTGCACTCCACA +
Preference number: 6 (lower is better)
Translates to: ASSVEVAAMAPA*ASAFVSSLHST
Trigger: TGTGGAGTGCAAGGAGGAAACAAATGCTGAAGCCCAGGCAGGGGCCATGGCCGCCACCTCAACCGAGGAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 72 bp CCGCCTCCTCAGGATCTGAAGTATCCTCGTCGCTGGTaGTCGAGTCGTCATCACTCTCGTCGGAGGAGTCGG +
Preference number: 6 (lower is better)
Translates to: PPPQDLKYPRRW*SSRHHSRRRSR
Trigger: CCGACTCCTCCGACGAGAGTGATGACGACTCGAGCACCAGCGACGAGGATACTTCAGATCCTGAGGAGGCGG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CAA 90 bp TCACTCTCCGAGTCGCTCTCACTCTCCGAGTCGCTCTCACTCTCCTaGACAGTGGCACAGCCTATGGCTCCTCCACTGTCGTGGCTGCTC +
Preference number: 6 (lower is better)
Translates to: SLSESLSLSESLSLS*TVAQPMAPPLSWLL
Trigger: GAGCAGCCACGACAGTGGAGGAGCCATAGGCTGTGCCACTGTCAAGGAGAGTGAGAGCGACTCGGAGAGTGAGAGCGACTCGGAGAGTGA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 72 bp TTCAAACAGGCTTTCCATTTCCTCGACCTGCCACTGTaGGAAGTGGAATGGCGGTCCACGGCGACGACGGCG +
Preference number: 6 (lower is better)
Translates to: FKQAFHFLDLPL*EVEWRSTATTA
Trigger: CGCCGTCGTCGCCGTGGACCGCCATTCCACTTCGCACAGTGGCAGGTCGAGGAAATGGAAAGCCTGTTTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CCA 72 bp CTGCCGCCTCCTCAGGATCTGAAGTATCCTCGTCGCTaGTGCTCGAGTCGTCATCACTCTCGTCGGAGGAGT +
Preference number: 6 (lower is better)
Translates to: LPPPQDLKYPRR*CSSRHHSRRRS
Trigger: ACTCCTCCGACGAGAGTGATGACGACTCGAGCACCAGCGACGAGGATACTTCAGATCCTGAGGAGGCGGCAG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS TCA 72 bp AGTCGCTCTCACTCTCCGAGTCGCTCTCACTCTCCTTaGCAGTGGCACAGCCTATGGCTCCTCCACTGTCGT +
Preference number: 6 (lower is better)
Translates to: SRSHSPSRSHSP*QWHSLWLLHCR
Trigger: ACGACAGTGGAGGAGCCATAGGCTGTGCCACTGTCAAGGAGAGTGAGAGCGACTCGGAGAGTGAGAGCGACT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 72 bp TGGGTCTCTTCAAACAGGCTTTCCATTTCCTCGACCTaGCACTGTGCGAAGTGGAATGGCGGTCCACGGCGA +
Preference number: 6 (lower is better)
Translates to: WVSSNRLSISST*HCAKWNGGPRR
Trigger: TCGCCGTGGACCGCCATTCCACTTCGCACAGTGGCAGGTCGAGGAAATGGAAAGCCTGTTTGAAGAGACCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CAA 90 bp CCTCGGTTGAGGTGGCGGCCATGGCCCCTGCCTGGGCTTCAGCATTaGTTTCCTCCTTGCACTCCACAATGTAGTAATTGTGGTCAAAAG +
Preference number: 6 (lower is better)
Translates to: PRLRWRPWPLPGLQH*FPPCTPQCSNCGQK
Trigger: CTTTTGACCACAATTACTACATTGTGGAGTGCAAGGAGGAAACAAATGCTGAAGCCCAGGCAGGGGCCATGGCCGCCACCTCAACCGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CAA 72 bp AGGTGGCGGCCATGGCCCCTGCCTGGGCTTCAGCATTaGTTTCCTCCTTGCACTCCACAATGTAGTAATTGT +
Preference number: 6 (lower is better)
Translates to: RWRPWPLPGLQH*FPPCTPQCSNC
Trigger: ACAATTACTACATTGTGGAGTGCAAGGAGGAAACAAATGCTGAAGCCCAGGCAGGGGCCATGGCCGCCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CCA 72 bp CTTGCAAGCTCTCCCCTTGTAAGCAAATCCGGGTACTaGGTCTCTTCAAACAGGCTTTCCATTTCCTCGACC +
Preference number: 6 (lower is better)
Translates to: LASSPLVSKSGY*VSSNRLSISST
Trigger: GGTCGAGGAAATGGAAAGCCTGTTTGAAGAGACCCAGTACCCGGATTTGCTTACAAGGGGAGAGCTTGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 72 bp TGGCCCCTGCCTGGGCTTCAGCATTTGTTTCCTCCTTaGACTCCACAATGTAGTAATTGTGGTCAAAAGGGA +
Preference number: 6 (lower is better)
Translates to: WPLPGLQHLFPP*TPQCSNCGQKG
Trigger: TCCCTTTTGACCACAATTACTACATTGTGGAGTGCAAGGAGGAAACAAATGCTGAAGCCCAGGCAGGGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CAA 72 bp TCACGTCTCTCAATCTTCCTCTGCTTCGCTCTCCGATaGGTAAACCACACCTTCACTTTGACCTCAGGCACA +
Preference number: 6 (lower is better)
Translates to: SRLSIFLCFALR*VNHTFTLTSGT
Trigger: TGTGCCTGAGGTCAAAGTGAAGGTGTGGTTTACCAATCGGAGAGCGAAGCAGAGGAAGATTGAGAGACGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS GCA 72 bp CACCTTCACTTTGACCTCAGGCACATTCAAAGTTCTTaGAAGCTCTCCCCTTGTAAGCAAATCCGGGTACTG +
Preference number: 6 (lower is better)
Translates to: HLHFDLRHIQSS*KLSPCKQIRVL
Trigger: CAGTACCCGGATTTGCTTACAAGGGGAGAGCTTGCAAGAACTTTGAATGTGCCTGAGGTCAAAGTGAAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CAA 90 bp CTCAGCATTTCACGTCTCTCAATCTTCCTCTGCTTCGCTCTCCGATaGGTAAACCACACCTTCACTTTGACCTCAGGCACATTCAAAGTT +
Preference number: 6 (lower is better)
Translates to: LSISRLSIFLCFALR*VNHTFTLTSGTFKV
Trigger: AACTTTGAATGTGCCTGAGGTCAAAGTGAAGGTGTGGTTTACCAATCGGAGAGCGAAGCAGAGGAAGATTGAGAGACGTGAAATGCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4
CDS CAA 72 bp TGCTTCGCTCTCCGATTGGTAAACCACACCTTCACTTaGACCTCAGGCACATTCAAAGTTCTTGCAAGCTCT +
Preference number: 6 (lower is better)
Translates to: CFALRLVNHTFT*TSGTFKVLASS
Trigger: AGAGCTTGCAAGAACTTTGAATGTGCCTGAGGTCAAAGTGAAGGTGTGGTTTACCAATCGGAGAGCGAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152730.4