Pregenerated sensors for RHOX12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071766Ensembl transcript IDs: ENSMUST00000096453.12, ENSMUST00000115146.9, ENSMUST00000183737.3
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ATGCATGGTTTTGGGAGAAACCTGTCTTCGAGGGTGCCTAAGGCACCCCTAGTCGCTGCCTCCCTCTGCTaGTCCATCAGCCTCTTGATC | + |
|
Preference number: 4 (lower is better) Translates to: MHGFGRNLSSRVPKAPLVAASLC*SISLLI Trigger: GATCAAGAGGCTGATGGAGCAGCAGAGGGAGGCAGC...GACTAGGGGTGCCTTAGGCACCCTCGAAGACAGGTTTCTCCCAAAACCATGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000183737.3 |
||
| CDS-3UTR GCA 90 bp | AGGGTGCCTAAGGCACCCCTAGTCCTTACACTCCAGAATTCAAGGATGGTCATCAACCGTCTCCAAAGCTaGCTCCCTCTGCTGCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: RVPKAPLVLTLQNSRMVINRLQS*LPLLLH Trigger: ATGGAGCAGCAGAGGGAGGCAGCTTTGGAGACGGTT...GATGACCATCCTTGAATTCTGGAGTGTAAGGACTAGGGGTGCCTTAGGCACCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183737.3 |
||
| CDS-3UTR CCA 90 bp | TTAACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAAGGCGTGAAACCCAACTaGATCCGTGGCCTTGTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: LTCFHLTAGEDDASELLQGVKPN*IRGLVR Trigger: GCGCACAAGGCCACGGATCCAGTTGGGTTTCACGCC...TTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGTTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR GCA 90 bp | TTAACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAAGCTGCCTCCCTCTGCTaGTCCATCAGCCTCTTGATC | + |
|
Preference number: 4 (lower is better) Translates to: LTCFHLTAGEDDASELLQAASLC*SISLLI Trigger: GATCAAGAGGCTGATGGAGCAGCAGAGGGAGGCAGC...TTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGTTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR CCA 90 bp | TGCTTAACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCTTCTCCTCCGGCTGTaGATCTCCAGACCCTTGATG | + |
|
Preference number: 4 (lower is better) Translates to: CLTCFHLTAGEDDASELLLLLRL*ISRPLM Trigger: CATCAAGGGTCTGGAGATCCACAGCCGGAGGAGAAG...GAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGTTAAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR TCA 90 bp | TGCTTAACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCGCTCCATCAGCCTCTTaGTCAGCATCAAGGGTCACT | + |
|
Preference number: 4 (lower is better) Translates to: CLTCFHLTAGEDDASELLAPSAS*SASRVT Trigger: AGTGACCCTTGATGCTGATCAAGAGGCTGATGGAGC...GAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGTTAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR GCA 90 bp | ACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAAAAGCTGGCCATCAGCAGATaGACACTGCAGCACTTGAGA | + |
|
Preference number: 4 (lower is better) Translates to: TCFHLTAGEDDASELLQKLAISR*TLQHLR Trigger: TCTCAAGTGCTGCAGTGTGCATCTGCTGATGGCCAG...CTTTTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR CCA 90 bp | CCTAAGGCACCCCTAGTCCTTACACTCCAGAATTCAAGGATGGTCATCCAAGGGTCGTCTGGGATGCCCTaGCACTTTAATTTGTCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: PKAPLVLTLQNSRMVIQGSSGMP*HFNLSE Trigger: CTCAGACAAATTAAAGTGCCAGGGCATCCCAGACGA...CCCTTGGATGACCATCCTTGAATTCTGGAGTGTAAGGACTAGGGGTGCCTTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183737.3 |
||
| CDS-3UTR GCA 90 bp | ACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAAAAGCCTTGTCGTCTGGGATaGCCTGGCACTTTAATTTGT | + |
|
Preference number: 4 (lower is better) Translates to: TCFHLTAGEDDASELLQKPCRLG*PGTLIC Trigger: ACAAATTAAAGTGCCAGGGCATCCCAGACGACAAGG...CTTTTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR GCA 90 bp | AAGGCACCCCTAGTCCTTACACTCCAGAATTCAAGGATGGTCATCCAAGGGAGGTCTGCTAGGTACAAGTaGTTTGCAAGGTTCTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: KAPLVLTLQNSRMVIQGRSARYK*FARFFL Trigger: AAGGAAGAACCTTGCAAAGCACTTGTACCTAGCAGA...CCTCCCTTGGATGACCATCCTTGAATTCTGGAGTGTAAGGACTAGGGGTGCCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183737.3 |
||
| CDS-3UTR CCA 90 bp | ACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAAAAGTCGTCTGGGATGCCCTaGCACTTTAATTTGTCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: TCFHLTAGEDDASELLQKSSGMP*HFNLSE Trigger: CTCAGACAAATTAAAGTGCCAGGGCATCCCAGACGA...CTTTTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR TCA 90 bp | TTATATTATATATGCATGGTTTTGGGAGAAACCTGTCTTCGAGGGTGCCTAAGGGCTCCATCAGCCTCTTaGTCAGCATCAAGGGTCACT | + |
|
Preference number: 4 (lower is better) Translates to: LYYICMVLGETCLRGCLRAPSAS*SASRVT Trigger: AGTGACCCTTGATGCTGATCAAGAGGCTGATGGAGC...CCTTAGGCACCCTCGAAGACAGGTTTCTCCCAAAACCATGCATATATAATATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183737.3 |
||
| CDS-3UTR GCA 90 bp | TTAAGGGATAAGGATCCATGGTTAGTATTAGTGCTTAACATGCTTTCATCTGACAACCGTCTCCAAAGCTaGCTCCCTCTGCTGCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LRDKDPWLVLVLNMLSSDNRLQS*LPLLLH Trigger: ATGGAGCAGCAGAGGGAGGCAGCTTTGGAGACGGTT...GTCAGATGAAAGCATGTTAAGCACTAATACTAACCATGGATCCTTATCCCTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR GCA 90 bp | TTAACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAATCTGCTAGGTACAAGTaGTTTGCAAGGTTCTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: LTCFHLTAGEDDASELLQSARYK*FARFFL Trigger: AAGGAAGAACCTTGCAAAGCACTTGTACCTAGCAGA...TTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR CCA 90 bp | TTATTATATTATATATGCATGGTTTTGGGAGAAACCTGTCTTCGAGGGTGCCTACTTCTCCTCCGGCTGTaGATCTCCAGACCCTTGATG | + |
|
Preference number: 4 (lower is better) Translates to: LLYYICMVLGETCLRGCLLLLRL*ISRPLM Trigger: CATCAAGGGTCTGGAGATCCACAGCCGGAGGAGAAG...TAGGCACCCTCGAAGACAGGTTTCTCCCAAAACCATGCATATATAATATAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183737.3 |
||
| CDS-3UTR TCA 90 bp | ATATTATATATGCATGGTTTTGGGAGAAACCTGTCTTCGAGGGTGCCTAAGGCATATGACATTGTCACCTaGACTTTGGATTCTGCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: ILYMHGFGRNLSSRVPKAYDIVT*TLDSAR Trigger: CCTAGCAGAATCCAAAGTTCAGGTGACAATGTCATA...TGCCTTAGGCACCCTCGAAGACAGGTTTCTCCCAAAACCATGCATATATAATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183737.3 |
||
| CDS-3UTR TCA 90 bp | TTAAGGGATAAGGATCCATGGTTAGTATTAGTGCTTAACATGCTTTCATCTGACTTCTTAAACCATCTCTaGACTTTGGATTCTGCTAGG | + |
|
Preference number: 4 (lower is better) Translates to: LRDKDPWLVLVLNMLSSDFLNHL*TLDSAR Trigger: CCTAGCAGAATCCAAAGTTCAGAGATGGTTTAAGAA...GTCAGATGAAAGCATGTTAAGCACTAATACTAACCATGGATCCTTATCCCTTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR CCA 90 bp | TTAAGGGATAAGGATCCATGGTTAGTATTAGTGCTTAACATGCTTTCATCTGACACCATCTCTGAACTTTaGATTCTGCTAGGTACAAGT | + |
|
Preference number: 4 (lower is better) Translates to: LRDKDPWLVLVLNMLSSDTISEL*ILLGTS Trigger: ACTTGTACCTAGCAGAATCCAAAGTTCAGAGATGGT...GTCAGATGAAAGCATGTTAAGCACTAATACTAACCATGGATCCTTATCCCTTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS TCA 90 bp | GAACCGTCTCCAAAGCTGCCTCCCTCTGCTGCTCCATCAGCCTCTTaGTCAGCATCAAGGGTCACTTCGATCTCATTCTCCCCCAGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: EPSPKLPPSAAPSAS*SASRVTSISFSPSL Trigger: CAAACTGGGGGAGAATGAGATCGAAGTGACCCTTGATGCTGATCAAGAGGCTGATGGAGCAGCAGAGGGAGGCAGCTTTGGAGACGGTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000096453.12 ENSMUST00000115146.9 ENSMUST00000183737.3 |
||
| CDS-3UTR CAA 90 bp | CCTAAGGCACCCCTAGTCCTTACACTCCAGAATTCAAGGATGGTCATCCAAGGGTGCTCCATCAGCCTCTaGATCAGCATCAAGGGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: PKAPLVLTLQNSRMVIQGCSISL*ISIKGH Trigger: GTGACCCTTGATGCTGATCAAGAGGCTGATGGAGCA...CCCTTGGATGACCATCCTTGAATTCTGGAGTGTAAGGACTAGGGGTGCCTTAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183737.3 |
||
| CDS GCA 90 bp | GGCACTTTAATTTGTCTGAGCCATTTAGAGAACCGTCTCCAAAGCTaGCTCCCTCTGCTGCTCCATCAGCCTCTTGATCAGCATCAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: GTLICLSHLENRLQS*LPLLLHQPLDQHQG Trigger: CCCTTGATGCTGATCAAGAGGCTGATGGAGCAGCAGAGGGAGGCAGCTTTGGAGACGGTTCTCTAAATGGCTCAGACAAATTAAAGTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096453.12 ENSMUST00000115146.9 ENSMUST00000183737.3 |
||
| CDS-3UTR CAA 90 bp | ACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAAAAGTGCTCCATCAGCCTCTaGATCAGCATCAAGGGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: TCFHLTAGEDDASELLQKCSISL*ISIKGH Trigger: GTGACCCTTGATGCTGATCAAGAGGCTGATGGAGCA...CTTTTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR CAA 90 bp | TTAACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAATGCACACTGCAGCACTaGAGACTGCTGTTCTTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: LTCFHLTAGEDDASELLQCTLQH*RLLFFP Trigger: AGGAAAGAACAGCAGTCTCAAGTGCTGCAGTGTGCA...TTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGTTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS GCA 90 bp | TCTTCAATTCTCCAACGTAGATCACATCATCCTTGTCGTCTGGGATaGCCTGGCACTTTAATTTGTCTGAGCCATTTAGAGAACCGTCTC | + |
|
Preference number: 5 (lower is better) Translates to: SSILQRRSHHPCRLG*PGTLICLSHLENRL Trigger: GAGACGGTTCTCTAAATGGCTCAGACAAATTAAAGTGCCAGGGCATCCCAGACGACAAGGATGATGTGATCTACGTTGGAGAATTGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096453.12 ENSMUST00000115146.9 ENSMUST00000183737.3 |
||
| CDS-3UTR CAA 90 bp | TTAACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAACCCTGGCACTTTAATTaGTCTGAGCCATTTAGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: LTCFHLTAGEDDASELLQPWHFN*SEPFRE Trigger: TTCTCTAAATGGCTCAGACAAATTAAAGTGCCAGGG...TTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR CAA 90 bp | ACATGCTTTCATCTGACGGCTGGAGAAGATGATGCCTCAGAACTCCTCCAAAAGTCGTCTTTGATGTCATaGCCAATGTTCTTCAATTCT | + |
|
Preference number: 5 (lower is better) Translates to: TCFHLTAGEDDASELLQKSSLMS*PMFFNS Trigger: AGAATTGAAGAACATTGGCAATGACATCAAAGACGA...CTTTTGGAGGAGTTCTGAGGCATCATCTTCTCCAGCCGTCAGATGAAAGCATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096453.12 |
||
| CDS-3UTR CAA 90 bp | ATATTATATATGCATGGTTTTGGGAGAAACCTGTCTTCGAGGGTGCCTAAGGCACCCTGGCACTTTAATTaGTCTGAGCCATTTAGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: ILYMHGFGRNLSSRVPKAPWHFN*SEPFRE Trigger: TTCTCTAAATGGCTCAGACAAATTAAAGTGCCAGGG...TGCCTTAGGCACCCTCGAAGACAGGTTTCTCCCAAAACCATGCATATATAATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183737.3 |
||
| CDS CAA 90 bp | AGAACCGTCTCCAAAGCTGCCTCCCTCTGCTGCTCCATCAGCCTCTaGATCAGCATCAAGGGTCACTTCGATCTCATTCTCCCCCAGTTT | + |
|
Preference number: 6 (lower is better) Translates to: RTVSKAASLCCSISL*ISIKGHFDLILPQF Trigger: AAACTGGGGGAGAATGAGATCGAAGTGACCCTTGATGCTGATCAAGAGGCTGATGGAGCAGCAGAGGGAGGCAGCTTTGGAGACGGTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000096453.12 ENSMUST00000115146.9 ENSMUST00000183737.3 |
||
| CDS CAA 90 bp | TCACTGCATGGCATCCTGGCCATCAGCAGATGCACACTGCAGCACTaGAGACTGCTGTTCTTTCCTATAATGGGCTCTTCTTTTCTTAAA | + |
|
Preference number: 6 (lower is better) Translates to: SLHGILAISRCTLQH*RLLFFPIMGSSFLK Trigger: TTTAAGAAAAGAAGAGCCCATTATAGGAAAGAACAGCAGTCTCAAGTGCTGCAGTGTGCATCTGCTGATGGCCAGGATGCCATGCAGTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096453.12 ENSMUST00000115146.9 |
||
| CDS GCA 72 bp | CTCCAACGTAGATCACATCATCCTTGTCGTCTGGGATaGCCTGGCACTTTAATTTGTCTGAGCCATTTAGAG | + |
|
Preference number: 6 (lower is better) Translates to: LQRRSHHPCRLG*PGTLICLSHLE Trigger: CTCTAAATGGCTCAGACAAATTAAAGTGCCAGGGCATCCCAGACGACAAGGATGATGTGATCTACGTTGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000096453.12 ENSMUST00000115146.9 ENSMUST00000183737.3 |
||