Pregenerated sensors for RHOX11 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051038

Ensembl transcript IDs: ENSMUST00000054147.11

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CGCCACTGTTTGATGTGTAGGCCACCTTTTCCTCGGGTTCAGTCGTaGTTTCTTCCTCACAGAAGCTCATCCCATAGTAGTCGTAGTCGA	+
Preference number: 5 (lower is better) Translates to: RHCLMCRPPFPRVQS*FLPHRSSSHSSRSR Trigger: TCGACTACGACTACTATGGGATGAGCTTCTGTGAGGAAGAAATCACGACTGAACCCGAGGAAAAGGTGGCCTACACATCAAACAGTGGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054147.11
CDS CCA 72 bp	CTGCTCACTGGTCTCGGCCACCTTACTGGTCTCCTCTaGCTCTTCTCGCCCAGTGTCCTGAGTGTTAGGCAT	+
Preference number: 6 (lower is better) Translates to: LLTGLGHLTGLL*LFSPSVLSVRH Trigger: ATGCCTAACACTCAGGACACTGGGCGAGAAGAGCCAGAGGAGACCAGTAAGGTGGCCGAGACCAGTGAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054147.11
CDS TCA 72 bp	TTACTGGTCTCCTCTGGCTCTTCTCGCCCAGTGTCCTaGGTGTTAGGCATGACACAGCTATGCTCGCCTATA	+
Preference number: 6 (lower is better) Translates to: LLVSSGSSRPVS*VLGMTQLCSPI Trigger: TATAGGCGAGCATAGCTGTGTCATGCCTAACACTCAGGACACTGGGCGAGAAGAGCCAGAGGAGACCAGTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054147.11
CDS GCA 72 bp	AATCTGTATGCTTTCCGAGGAATCCTGAATAACGACTaGTCACTGGTCTCGGCCACCTTACTGGTCTCCTCT	+
Preference number: 6 (lower is better) Translates to: NLYAFRGILNND*SLVSATLLVSS Trigger: AGAGGAGACCAGTAAGGTGGCCGAGACCAGTGAGCAGTCGTTATTCAGGATTCCTCGGAAAGCATACAGATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054147.11
CDS TCA 72 bp	TTGATGTGTAGGCCACCTTTTCCTCGGGTTCAGTCGTaGTTTCTTCCTCACAGAAGCTCATCCCATAGTAGT	+
Preference number: 6 (lower is better) Translates to: LMCRPPFPRVQS*FLPHRSSSHSS Trigger: ACTACTATGGGATGAGCTTCTGTGAGGAAGAAATCACGACTGAACCCGAGGAAAAGGTGGCCTACACATCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054147.11
CDS GCA 72 bp	TTTGAGGGCATCTGGATACTGATTTTCTACGAACACTaGTTGCAGTTCCCACAGCTGTCCAGGTGTAAATCT	+
Preference number: 6 (lower is better) Translates to: FEGIWILIFYEH*LQFPQLSRCKS Trigger: AGATTTACACCTGGACAGCTGTGGGAACTGCAAGCAGTGTTCGTAGAAAATCAGTATCCAGATGCCCTCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054147.11