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Pregenerated sensors for RHOX10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053909

Ensembl transcript IDs: ENSMUST00000115150.4

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CAGCTCGTGCAGGTCTCTTACACCTCTTCCAAAGCGACATTGGGCTaGCCTGGCCGCAGCCCTCTGCTGAGATTCAGTCATTATTACTTC +
Preference number: 5 (lower is better)
Translates to: QLVQVSYTSSKATLG*PGRSPLLRFSHYYF
Trigger: GAAGTAATAATGACTGAATCTCAGCAGAGGGCTGCGGCCAGGGCAGCCCAATGTCGCTTTGGAAGAGGTGTAAGAGACCTGCACGAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CCA 90 bp CGTGCAGGTCTCTTACACCTCTTCCAAAGCGACATTGGGCTGCCCTaGCCGCAGCCCTCTGCTGAGATTCAGTCATTATTACTTCCTCAT +
Preference number: 5 (lower is better)
Translates to: RAGLLHLFQSDIGLP*PQPSAEIQSLLLPH
Trigger: ATGAGGAAGTAATAATGACTGAATCTCAGCAGAGGGCTGCGGCCAGGGCAGCCCAATGTCGCTTTGGAAGAGGTGTAAGAGACCTGCACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CCA 90 bp ACTGGGTCTCTTGGAAAGCCTTCTCTAGTTCACACATTTGGGCATTaGTGTACTTCTTGCTGTTGGAGCGACGAGAAACTGCTCCCGCTG +
Preference number: 5 (lower is better)
Translates to: TGSLGKPSLVHTFGH*CTSCCWSDEKLLPL
Trigger: CAGCGGGAGCAGTTTCTCGTCGCTCCAACAGCAAGAAGTACACCAATGCCCAAATGTGTGAACTAGAGAAGGCTTTCCAAGAGACCCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS TCA 90 bp TGCTCCTCAGGAACAGAGGTACTACTCTTGGGGTCTTCATTCATCTaGGCCGAAAAGTTGTTCGAGGTTCCAGATGTAGCATTGCTGAGT +
Preference number: 5 (lower is better)
Translates to: CSSGTEVLLLGSSFI*AEKLFEVPDVALLS
Trigger: ACTCAGCAATGCTACATCTGGAACCTCGAACAACTTTTCGGCTCAGATGAATGAAGACCCCAAGAGTAGTACCTCTGTTCCTGAGGAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CCA 90 bp TTTGCAAGTGCTTTTCTTTGGTGTGCATCAGGATACTGGGTCTCTTaGAAAGCCTTCTCTAGTTCACACATTTGGGCATTGGTGTACTTC +
Preference number: 5 (lower is better)
Translates to: FASAFLWCASGYWVS*KAFSSSHIWALVYF
Trigger: GAAGTACACCAATGCCCAAATGTGTGAACTAGAGAAGGCTTTCCAAGAGACCCAGTATCCTGATGCACACCAAAGAAAAGCACTTGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CAA 72 bp CTCGTGCAGGTCTCTTACACCTCTTCCAAAGCGACATaGGGCTGCCCTGGCCGCAGCCCTCTGCTGAGATTC +
Preference number: 6 (lower is better)
Translates to: LVQVSYTSSKAT*GCPGRSPLLRF
Trigger: GAATCTCAGCAGAGGGCTGCGGCCAGGGCAGCCCAATGTCGCTTTGGAAGAGGTGTAAGAGACCTGCACGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CAA 90 bp CTGGCCCAGCTCGTGCAGGTCTCTTACACCTCTTCCAAAGCGACATaGGGCTGCCCTGGCCGCAGCCCTCTGCTGAGATTCAGTCATTAT +
Preference number: 6 (lower is better)
Translates to: LAQLVQVSYTSSKAT*GCPGRSPLLRFSHY
Trigger: ATAATGACTGAATCTCAGCAGAGGGCTGCGGCCAGGGCAGCCCAATGTCGCTTTGGAAGAGGTGTAAGAGACCTGCACGAGCTGGGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CCA 72 bp GACGAGAAACTGCTCCCGCTGCTTTCTCGGGCTCTTTaGGACGGGCTTGAGTTTCCTTTCTTGTTTCAGAGC +
Preference number: 6 (lower is better)
Translates to: DEKLLPLLSRAL*DGLEFPFLFQS
Trigger: GCTCTGAAACAAGAAAGGAAACTCAAGCCCGTCCCAAAGAGCCCGAGAAAGCAGCGGGAGCAGTTTCTCGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CAA 72 bp TGCTCCCGCTGCTTTCTCGGGCTCTTTGGGACGGGCTaGAGTTTCCTTTCTTGTTTCAGAGCTGTAGGTTTG +
Preference number: 6 (lower is better)
Translates to: CSRCFLGLFGTG*SFLSCFRAVGL
Trigger: CAAACCTACAGCTCTGAAACAAGAAAGGAAACTCAAGCCCGTCCCAAAGAGCCCGAGAAAGCAGCGGGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS GCA 72 bp TCTCTAGTTCACACATTTGGGCATTGGTGTACTTCTTaGTGTTGGAGCGACGAGAAACTGCTCCCGCTGCTT +
Preference number: 6 (lower is better)
Translates to: SLVHTFGHWCTS*CWSDEKLLPLL
Trigger: AAGCAGCGGGAGCAGTTTCTCGTCGCTCCAACAGCAAGAAGTACACCAATGCCCAAATGTGTGAACTAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CAA 72 bp GGCTTGAGTTTCCTTTCTTGTTTCAGAGCTGTAGGTTaGCGTGTATTTAAAGGTCGGGTGGTCGTCCTGGCC +
Preference number: 6 (lower is better)
Translates to: GLSFLSCFRAVG*RVFKGRVVVLA
Trigger: GGCCAGGACGACCACCCGACCTTTAAATACACGCAAACCTACAGCTCTGAAACAAGAAAGGAAACTCAAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CAA 72 bp TTCTCTAGTTCACACATTTGGGCATTGGTGTACTTCTaGCTGTTGGAGCGACGAGAAACTGCTCCCGCTGCT +
Preference number: 6 (lower is better)
Translates to: FSSSHIWALVYF*LLERRETAPAA
Trigger: AGCAGCGGGAGCAGTTTCTCGTCGCTCCAACAGCAAGAAGTACACCAATGCCCAAATGTGTGAACTAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS GCA 72 bp TTGCCAAGATGTTGCTGGCACACAATGAACCCTATTTaGTCCTCAGGAACAGAGGTACTACTCTTGGGGTCT +
Preference number: 6 (lower is better)
Translates to: LPRCCWHTMNPI*SSGTEVLLLGS
Trigger: AGACCCCAAGAGTAGTACCTCTGTTCCTGAGGAGCAAATAGGGTTCATTGTGTGCCAGCAACATCTTGGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CAA 90 bp CCAGCAGGATTTGCCAAGATGTTGCTGGCACACAATGAACCCTATTaGCTCCTCAGGAACAGAGGTACTACTCTTGGGGTCTTCATTCAT +
Preference number: 6 (lower is better)
Translates to: PAGFAKMLLAHNEPY*LLRNRGTTLGVFIH
Trigger: ATGAATGAAGACCCCAAGAGTAGTACCTCTGTTCCTGAGGAGCAAATAGGGTTCATTGTGTGCCAGCAACATCTTGGCAAATCCTGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS TCA 72 bp GGAACAGAGGTACTACTCTTGGGGTCTTCATTCATCTaGGCCGAAAAGTTGTTCGAGGTTCCAGATGTAGCA +
Preference number: 6 (lower is better)
Translates to: GTEVLLLGSSFI*AEKLFEVPDVA
Trigger: TGCTACATCTGGAACCTCGAACAACTTTTCGGCTCAGATGAATGAAGACCCCAAGAGTAGTACCTCTGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CCA 72 bp CTTGGAAAGCCTTCTCTAGTTCACACATTTGGGCATTaGTGTACTTCTTGCTGTTGGAGCGACGAGAAACTG +
Preference number: 6 (lower is better)
Translates to: LGKPSLVHTFGH*CTSCCWSDEKL
Trigger: CAGTTTCTCGTCGCTCCAACAGCAAGAAGTACACCAATGCCCAAATGTGTGAACTAGAGAAGGCTTTCCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS CCA 72 bp GCTTTTCTTTGGTGTGCATCAGGATACTGGGTCTCTTaGAAAGCCTTCTCTAGTTCACACATTTGGGCATTG +
Preference number: 6 (lower is better)
Translates to: AFLWCASGYWVS*KAFSSSHIWAL
Trigger: CAATGCCCAAATGTGTGAACTAGAGAAGGCTTTCCAAGAGACCCAGTATCCTGATGCACACCAAAGAAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4
CDS GCA 72 bp AGCCTTCACCTTGCATTCGTCCACATCAATAAGTTTTaGAAGTGCTTTTCTTTGGTGTGCATCAGGATACTG +
Preference number: 6 (lower is better)
Translates to: SLHLAFVHINKF*KCFSLVCIRIL
Trigger: CAGTATCCTGATGCACACCAAAGAAAAGCACTTGCAAAACTTATTGATGTGGACGAATGCAAGGTGAAGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115150.4