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Pregenerated sensors for RHOX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071773

Ensembl transcript IDs: ENSMUST00000115210.2

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp GGGATAGCCTCTGCATCTGGCTCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCAAGAAGCTCCAGCTGCTaGAGCTGCCAGCGGGAGAAC +
Preference number: 4 (lower is better)
Translates to: GIASASGSQARANLEASPRSSSC*SCQREN
Trigger: GTTCTCCCGCTGGCAGCTGCAGCAGCTGGAGCTTCT...TGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGAGCCAGATGCAGAGGCTATCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR GCA 90 bp GCTCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAAGGTGTCCAGCTGCTGCAGCTaGCAGCGGGAGAACCTGTTG +
Preference number: 4 (lower is better)
Translates to: APRQGLTLRPLHNLQGKVSSCCS*QRENLL
Trigger: CAACAGGTTCTCCCGCTGGCAGCTGCAGCAGCTGGA...CACCTTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR TCA 90 bp GCTCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAAGGTGGCCCTGTGTGACCTATaGCCTTTGCCCCTTGTGACC +
Preference number: 4 (lower is better)
Translates to: APRQGLTLRPLHNLQGKVALCDL*PLPLVT
Trigger: GGTCACAAGGGGCAAAGGTCATAGGTCACACAGGGC...CACCTTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR GCA 90 bp GGCTCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAAGGTAAAAGAAGCTCCAGCTaGTGCAGCTGCCAGCGGGAG +
Preference number: 4 (lower is better)
Translates to: GSQARANLEASPQSSGKGKRSSS*CSCQRE
Trigger: CTCCCGCTGGCAGCTGCAGCAGCTGGAGCTTCTTTT...ACCTTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR TCA 90 bp TCTGGCTCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAATTGTCTACTGAATGCTaGGGCGGCTGCTGCTACTCC +
Preference number: 4 (lower is better)
Translates to: SGSQARANLEASPQSSGKLSTEC*GGCCYS
Trigger: GGAGTAGCAGCAGCCGCCTCAGCATTCAGTAGACAA...TTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGAGCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR TCA 90 bp TCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAAGGTGATCAATGCTGCCCTGTGTaGCCTATGACCTTTGCCCCT +
Preference number: 4 (lower is better)
Translates to: SQARANLEASPQSSGKGDQCCPV*PMTFAP
Trigger: AGGGGCAAAGGTCATAGGTCACACAGGGCAGCATTG...ATCACCTTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR TCA 90 bp CTGCATCTGGCTCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGCGAATCTTGTTGGTGTaGCAGCCAAAGGCCAATGCT +
Preference number: 4 (lower is better)
Translates to: LHLAPRQGLTLRPLHNLQRILLV*QPKANA
Trigger: AGCATTGGCCTTTGGCTGTCACACCAACAAGATTCG...CTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGAGCCAGATGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR GCA 90 bp TCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAAGGTGATGCCGTCGGAGCAGCTTaGAGCTTGTGTGTCTGTAGA +
Preference number: 4 (lower is better)
Translates to: SQARANLEASPQSSGKGDAVGAA*SLCVCR
Trigger: TCTACAGACACACAAGCTGCAAGCTGCTCCGACGGC...ATCACCTTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR GCA 90 bp TCTGGCTCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAACCGTTTTCTGTCTTGTaGACTGATGTACTGAGTGCG +
Preference number: 4 (lower is better)
Translates to: SGSQARANLEASPQSSGKPFSVL*TDVLSA
Trigger: CGCACTCAGTACATCAGTGCACAAGACAGAAAACGG...TTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGAGCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR GCA 90 bp TCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAAGGTGATGAAGCAGGTGATAGATaGTTTGGTGCTCCATGTTCC +
Preference number: 4 (lower is better)
Translates to: SQARANLEASPQSSGKGDEAGDR*FGAPCS
Trigger: GGAACATGGAGCACCAAAGCATCTATCACCTGCTTC...ATCACCTTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS TCA 90 bp GAAGCCTGCAGCACCAGCAGCAGGCCCATCTTGTCTACTGAATGCTaGGGCGGCTGCTGCTACTCCAGACCCAGGCTGGCCCGGTCCACT +
Preference number: 5 (lower is better)
Translates to: EACSTSSRPILSTEC*GGCCYSRPRLARST
Trigger: AGTGGACCGGGCCAGCCTGGGTCTGGAGTAGCAGCAGCCGCCTCAGCATTCAGTAGACAAGATGGGCCTGCTGCTGGTGCTGCAGGCTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS TCA 90 bp GGCTGCGCAACCCGGGCGTCTCTCATACTCCAGAAAACCGGCTGCTaGAGCTGCTGTGCATTCTCCCAGTCATGGCCTTCTCGGGTACAG +
Preference number: 5 (lower is better)
Translates to: GCATRASLILQKTGC*SCCAFSQSWPSRVQ
Trigger: CTGTACCCGAGAAGGCCATGACTGGGAGAATGCACAGCAGCTTCAGCAGCCGGTTTTCTGGAGTATGAGAGACGCCCGGGTTGCGCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS GCA 90 bp GGCTTCACACACACACAGACACACTGCCAGCCGTTTTCTGTCTTGTaGACTGATGTACTGAGTGCGCTGGAAAAGAAGCTCCAGCTGCTG +
Preference number: 5 (lower is better)
Translates to: GFTHTQTHCQPFSVL*TDVLSALEKKLQLL
Trigger: CAGCAGCTGGAGCTTCTTTTCCAGCGCACTCAGTACATCAGTGCACAAGACAGAAAACGGCTGGCAGTGTGTCTGTGTGTGTGTGAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR CAA 90 bp GCTCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAAGGTGCAGCCGTTTTCTGTCTaGTGCACTGATGTACTGAGT +
Preference number: 5 (lower is better)
Translates to: APRQGLTLRPLHNLQGKVQPFSV*CTDVLS
Trigger: ACTCAGTACATCAGTGCACAAGACAGAAAACGGCTG...CACCTTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS CCA 90 bp GTTTTCCTAAGTTCTTTAGCCACAGGAATGTCTCTCGAATCTTGTTaGTGTGACAGCCAAAGGCCAATGCTGCCCTGTGTGACCTATGAC +
Preference number: 5 (lower is better)
Translates to: VFLSSLATGMSLESC*CDSQRPMLPCVTYD
Trigger: GTCATAGGTCACACAGGGCAGCATTGGCCTTTGGCTGTCACACCAACAAGATTCGAGAGACATTCCTGTGGCTAAAGAACTTAGGAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS-3UTR CAA 90 bp TCCCAGGCAAGGGCTAACCTTGAGGCCTCTCCACAATCTTCAGGGAAAGGTGATTTCTGCTCTTCTCCTTaGAAACCAATTCTGCACTTT +
Preference number: 5 (lower is better)
Translates to: SQARANLEASPQSSGKGDFCSSP*KPILHF
Trigger: AAAGTGCAGAATTGGTTTCAAAGGAGAAGAGCAGAA...ATCACCTTTCCCTGAAGATTGTGGAGAGGCCTCAAGGTTAGCCCTTGCCTGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS CCA 90 bp ATTTCCTATATTCTGCTCTTCTCCTTTGAAACCAATTCTGCACTTTaGCTTCACACACACACAGACACACTGCCAGCCGTTTTCTGTCTT +
Preference number: 5 (lower is better)
Translates to: ISYILLFSFETNSAL*LHTHTDTLPAVFCL
Trigger: AAGACAGAAAACGGCTGGCAGTGTGTCTGTGTGTGTGTGAAGCCAAAGTGCAGAATTGGTTTCAAAGGAGAAGAGCAGAATATAGGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS CCA 72 bp GAACCTGTTGCTGAGGCCACATTTGCCCTTCGGCGGTaGCCCAGGCTGCGCAACCCGGGCGTCTCTCATACT +
Preference number: 6 (lower is better)
Translates to: EPVAEATFALRR*PRLRNPGVSHT
Trigger: AGTATGAGAGACGCCCGGGTTGCGCAGCCTGGGCCACCGCCGAAGGGCAAATGTGGCCTCAGCAACAGGTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS TCA 72 bp AGCACCAGCAGCAGGCCCATCTTGTCTACTGAATGCTaGGGCGGCTGCTGCTACTCCAGACCCAGGCTGGCC +
Preference number: 6 (lower is better)
Translates to: STSSRPILSTEC*GGCCYSRPRLA
Trigger: GGCCAGCCTGGGTCTGGAGTAGCAGCAGCCGCCTCAGCATTCAGTAGACAAGATGGGCCTGCTGCTGGTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS TCA 72 bp AGCCTGCAGCACCAGCAGCAGGCCCATCTTGTCTACTaGATGCTGAGGCGGCTGCTGCTACTCCAGACCCAG +
Preference number: 6 (lower is better)
Translates to: SLQHQQQAHLVY*MLRRLLLLQTQ
Trigger: CTGGGTCTGGAGTAGCAGCAGCCGCCTCAGCATTCAGTAGACAAGATGGGCCTGCTGCTGGTGCTGCAGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS CCA 72 bp AATGCTGAGGCGGCTGCTGCTACTCCAGACCCAGGCTaGCCCGGTCCACTCTCTCCCTCGTTTCTTCCTTCT +
Preference number: 6 (lower is better)
Translates to: NAEAAAATPDPG*PGPLSPSFLPS
Trigger: AGAAGGAAGAAACGAGGGAGAGAGTGGACCGGGCCAGCCTGGGTCTGGAGTAGCAGCAGCCGCCTCAGCATT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS TCA 72 bp TCTCCCAGTCATGGCCTTCTCGGGTACAGGGAACCATaGAGCCTGCAGCACCAGCAGCAGGCCCATCTTGTC +
Preference number: 6 (lower is better)
Translates to: SPSHGLLGYREP*SLQHQQQAHLV
Trigger: GACAAGATGGGCCTGCTGCTGGTGCTGCAGGCTTCATGGTTCCCTGTACCCGAGAAGGCCATGACTGGGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS TCA 72 bp ACCCGGGCGTCTCTCATACTCCAGAAAACCGGCTGCTaGAGCTGCTGTGCATTCTCCCAGTCATGGCCTTCT +
Preference number: 6 (lower is better)
Translates to: TRASLILQKTGC*SCCAFSQSWPS
Trigger: AGAAGGCCATGACTGGGAGAATGCACAGCAGCTTCAGCAGCCGGTTTTCTGGAGTATGAGAGACGCCCGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS GCA 72 bp CCTCATCCTCAGGTATTATACGAAGCAGGTGATAGATaGTTTGGTGCTCCATGTTCCGAAAGCCGTCGGAGC +
Preference number: 6 (lower is better)
Translates to: PHPQVLYEAGDR*FGAPCSESRRS
Trigger: GCTCCGACGGCTTTCGGAACATGGAGCACCAAAGCATCTATCACCTGCTTCGTATAATACCTGAGGATGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS GCA 72 bp CACACACAGACACACTGCCAGCCGTTTTCTGTCTTGTaGACTGATGTACTGAGTGCGCTGGAAAAGAAGCTC +
Preference number: 6 (lower is better)
Translates to: HTQTHCQPFSVL*TDVLSALEKKL
Trigger: GAGCTTCTTTTCCAGCGCACTCAGTACATCAGTGCACAAGACAGAAAACGGCTGGCAGTGTGTCTGTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS CCA 72 bp AGTTCTTTAGCCACAGGAATGTCTCTCGAATCTTGTTaGTGTGACAGCCAAAGGCCAATGCTGCCCTGTGTG +
Preference number: 6 (lower is better)
Translates to: SSLATGMSLESC*CDSQRPMLPCV
Trigger: CACACAGGGCAGCATTGGCCTTTGGCTGTCACACCAACAAGATTCGAGAGACATTCCTGTGGCTAAAGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS CAA 72 bp ACACACACACAGACACACTGCCAGCCGTTTTCTGTCTaGTGCACTGATGTACTGAGTGCGCTGGAAAAGAAG +
Preference number: 6 (lower is better)
Translates to: THTQTHCQPFSV*CTDVLSALEKK
Trigger: CTTCTTTTCCAGCGCACTCAGTACATCAGTGCACAAGACAGAAAACGGCTGGCAGTGTGTCTGTGTGTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2
CDS CCA 72 bp ATTCTGCTCTTCTCCTTTGAAACCAATTCTGCACTTTaGCTTCACACACACACAGACACACTGCCAGCCGTT +
Preference number: 6 (lower is better)
Translates to: ILLFSFETNSAL*LHTHTDTLPAV
Trigger: AACGGCTGGCAGTGTGTCTGTGTGTGTGTGAAGCCAAAGTGCAGAATTGGTTTCAAAGGAGAAGAGCAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000115210.2