Pregenerated sensors for RHOV (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034226Ensembl transcript IDs: ENSMUST00000037360.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCCCTCTGCTAGCCCAGCCAGTTTGGCCAGTGCCTGGGGAACCCTaGGACCCAGTTCTTCCCAGGGAGCAGTCCTGTCCTCCCTGGCCT | + |
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Preference number: 1 (lower is better) Translates to: APLLAQPVWPVPGEP*DPVLPREQSCPPWP Trigger: AGGCCAGGGAGGACAGGACTGCTCCCTGGGAAGAACTGGGTCTCAGGGTTCCCCAGGCACTGGCCAAACTGGCTGGGCTAGCAGAGGGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR GCA 90 bp | ATAGCTCACCTTCTAAGCTATGACCTTGGGGAAAGGGACGGTCCCTaGCCCTTCCTCCTTCAGGCTCCTACCTGCAGCTCCTCCCCTCCC | + |
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Preference number: 1 (lower is better) Translates to: IAHLLSYDLGERDGP*PFLLQAPTCSSSPP Trigger: GGGAGGGGAGGAGCTGCAGGTAGGAGCCTGAAGGAGGAAGGGGCAGGGACCGTCCCTTTCCCCAAGGTCATAGCTTAGAAGGTGAGCTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR CCA 90 bp | AGGCCCATGTGCCCTGTGTTCAATAGAGAACTGAGTTCCAGGGGTTaGCCAGGCCCTGCCAGTACCCGATGTCTCGGGGTCCAGAAGTCT | + |
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Preference number: 1 (lower is better) Translates to: RPMCPVFNRELSSRG*PGPASTRCLGVQKS Trigger: AGACTTCTGGACCCCGAGACATCGGGTACTGGCAGGGCCTGGCCAACCCCTGGAACTCAGTTCTCTATTGAACACAGGGCACATGGGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR CCA 90 bp | AAAGAAATCCAAATGGGGCAGCCCCTGCACAGACAGAGCTCACCCTaGCTCACCAGGGTGTACAGCTTTGAGGCCCATGTGCCCTGTGTT | + |
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Preference number: 1 (lower is better) Translates to: KEIQMGQPLHRQSSP*LTRVYSFEAHVPCV Trigger: AACACAGGGCACATGGGCCTCAAAGCTGTACACCCTGGTGAGCCAGGGTGAGCTCTGTCTGTGCAGGGGCTGCCCCATTTGGATTTCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR TCA 90 bp | GGCCTGCATTCAGCCAAACTGACCTGTGGCCCCAGGATAAGAAACTaGGAATTACATCCCAAGCTGCTCAGCAGCACTGACGCTGATGGC | + |
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Preference number: 1 (lower is better) Translates to: GLHSAKLTCGPRIRN*ELHPKLLSSTDADG Trigger: GCCATCAGCGTCAGTGCTGCTGAGCAGCTTGGGATGTAATTCTCAGTTTCTTATCCTGGGGCCACAGGTCAGTTTGGCTGAATGCAGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR TCA 90 bp | CATCCCAAGCTGCTCAGCAGCACTGACGCTGATGGCGCTATCCCATaGAAATCAAAGTGCTGGGATTTTCCTGTGAGTCTTGACCAAAGA | + |
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Preference number: 1 (lower is better) Translates to: HPKLLSSTDADGAIP*KSKCWDFPVSLDQR Trigger: TCTTTGGTCAAGACTCACAGGAAAATCCCAGCACTTTGATTTTCATGGGATAGCGCCATCAGCGTCAGTGCTGCTGAGCAGCTTGGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR GCA 90 bp | GTCCACCACTCGCCTCACTTTCTGTTTTCCCTCTCAATCTCTCACTaGCCTCTTCTTCATACCCCATCTCAAACGTCTCCAAATCAAGCT | + |
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Preference number: 1 (lower is better) Translates to: VHHSPHFLFSLSISH*PLLHTPSQTSPNQA Trigger: AGCTTGATTTGGAGACGTTTGAGATGGGGTATGAAGAAGAGGGCAGTGAGAGATTGAGAGGGAAAACAGAAAGTGAGGCGAGTGGTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR-3UTR CCA 90 bp | GGCCTTGGGGCTCGAGGGCAGCCCAGGTGTCGGCCTTCTCCACAGCTGTCCACCAGCCAAACTGACCTGTaGCCCCAGGATAAGAAACTG | + |
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Preference number: 2 (lower is better) Translates to: GLGARGQPRCRPSPQLSTSQTDL*PQDKKL Trigger: CAGTTTCTTATCCTGGGGCCACAGGTCAGTTTGGCT...GGTGGACAGCTGTGGAGAAGGCCGACACCTGGGCTGCCCTCGAGCCCCAAGGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGCCCAGGCCTCTAATCTGCCTCCTGTCCACCACTCGCCTCACTTTCTGTTTCTGAGTTCCAGGGGTTaGCCAGGCCCTGCCAGTACC | + |
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Preference number: 2 (lower is better) Translates to: QAQASNLPPVHHSPHFLFLSSRG*PGPAST Trigger: GGTACTGGCAGGGCCTGGCCAACCCCTGGAACTCAG...AAACAGAAAGTGAGGCGAGTGGTGGACAGGAGGCAGATTAGAGGCCTGGGCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR-3UTR TCA 90 bp | CAGGCCCAGGCCTCTAATCTGCCTCCTGTCCACCACTCGCCTCACTTTCTGTTTGTCTCCAAATCAAGCTaGCCATCCGCCAGCCCTGCA | + |
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Preference number: 2 (lower is better) Translates to: QAQASNLPPVHHSPHFLFVSKSS*PSASPA Trigger: TGCAGGGCTGGCGGATGGTCAGCTTGATTTGGAGAC...AAACAGAAAGTGAGGCGAGTGGTGGACAGGAGGCAGATTAGAGGCCTGGGCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR CAA 90 bp | CCCTGCACAGACAGAGCTCACCCTGGCTCACCAGGGTGTACAGCTTaGAGGCCCATGTGCCCTGTGTTCAATAGAGAACTGAGTTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: PCTDRAHPGSPGCTA*RPMCPVFNRELSSR Trigger: CCTGGAACTCAGTTCTCTATTGAACACAGGGCACATGGGCCTCAAAGCTGTACACCCTGGTGAGCCAGGGTGAGCTCTGTCTGTGCAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR-3UTR GCA 90 bp | ATCTGCCTCCTGTCCACCACTCGCCTCACTTTCTGTTTTCCCTCTCAATCTCTCGCTTTGAGGCCCATGTaGCCTGTGTTCAATAGAGAA | + |
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Preference number: 2 (lower is better) Translates to: ICLLSTTRLTFCFPSQSLALRPM*PVFNRE Trigger: TTCTCTATTGAACACAGGGCACATGGGCCTCAAAGC...GAGAGATTGAGAGGGAAAACAGAAAGTGAGGCGAGTGGTGGACAGGAGGCAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR-3UTR GCA 90 bp | AATCTCTCACTGCCCTCTTCTTCATACCCCATCTCAAACGTCTCCAAATCAAGCGCCAGCCCTGCAAGATaGCCCACTGTTCTCCTTGAT | + |
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Preference number: 2 (lower is better) Translates to: NLSLPSSSYPISNVSKSSASPAR*PTVLLD Trigger: ATCAAGGAGAACAGTGGGGCATCTTGCAGGGCTGGC...GCTTGATTTGGAGACGTTTGAGATGGGGTATGAAGAAGAGGGCAGTGAGAGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR GCA 72 bp | CCTGGCTCACCAGGGTGTACAGCTTTGAGGCCCATGTaGCCTGTGTTCAATAGAGAACTGAGTTCCAGGGGT | + |
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Preference number: 3 (lower is better) Translates to: PGSPGCTALRPM*PVFNRELSSRG Trigger: ACCCCTGGAACTCAGTTCTCTATTGAACACAGGGCACATGGGCCTCAAAGCTGTACACCCTGGTGAGCCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR TCA 72 bp | TCTTCATACCCCATCTCAAACGTCTCCAAATCAAGCTaGCCATCCGCCAGCCCTGCAAGATGCCCCACTGTT | + |
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Preference number: 3 (lower is better) Translates to: SSYPISNVSKSS*PSASPARCPTV Trigger: AACAGTGGGGCATCTTGCAGGGCTGGCGGATGGTCAGCTTGATTTGGAGACGTTTGAGATGGGGTATGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR TCA 72 bp | TCAGCCAAACTGACCTGTGGCCCCAGGATAAGAAACTaGGAATTACATCCCAAGCTGCTCAGCAGCACTGAC | + |
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Preference number: 3 (lower is better) Translates to: SAKLTCGPRIRN*ELHPKLLSSTD Trigger: GTCAGTGCTGCTGAGCAGCTTGGGATGTAATTCTCAGTTTCTTATCCTGGGGCCACAGGTCAGTTTGGCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR TCA 72 bp | CTGCTCAGCAGCACTGACGCTGATGGCGCTATCCCATaGAAATCAAAGTGCTGGGATTTTCCTGTGAGTCTT | + |
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Preference number: 3 (lower is better) Translates to: LLSSTDADGAIP*KSKCWDFPVSL Trigger: AAGACTCACAGGAAAATCCCAGCACTTTGATTTTCATGGGATAGCGCCATCAGCGTCAGTGCTGCTGAGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR TCA 72 bp | TTTATTTGCAGACTGTATAGCTCACCTTCTAAGCTATaGCCTTGGGGAAAGGGACGGTCCCTGCCCCTTCCT | + |
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Preference number: 3 (lower is better) Translates to: FICRLYSSPSKL*PWGKGRSLPLP Trigger: AGGAAGGGGCAGGGACCGTCCCTTTCCCCAAGGTCATAGCTTAGAAGGTGAGCTATACAGTCTGCAAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR GCA 72 bp | TCGCCTCACTTTCTGTTTTCCCTCTCAATCTCTCACTaGCCTCTTCTTCATACCCCATCTCAAACGTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: SPHFLFSLSISH*PLLHTPSQTSP Trigger: TGGAGACGTTTGAGATGGGGTATGAAGAAGAGGGCAGTGAGAGATTGAGAGGGAAAACAGAAAGTGAGGCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR TCA 90 bp | GGCCTTGGGGCTCGAGGGCAGCCCAGGTGTCGGCCTTCTCCACAGCTGTCCACCTCCCTTAGGTCAGCCTaGGTGCCCACCAGCAACACG | + |
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Preference number: 4 (lower is better) Translates to: GLGARGQPRCRPSPQLSTSLRSA*VPTSNT Trigger: CGTGTTGCTGGTGGGCACTCAGGCTGACCTAAGGGA...GGTGGACAGCTGTGGAGAAGGCCGACACCTGGGCTGCCCTCGAGCCCCAAGGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR TCA 90 bp | CCAAATGGGGCAGCCCCTGCACAGACAGAGCTCACCCTGGCTCACCAGGGTGTAGGTGCTTGGGGGTTGTaGGTGCGGATCTCAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PNGAAPAQTELTLAHQGVGAWGL*VRISGS Trigger: GCTGCCTGAGATCCGCACTCACAACCCCCAAGCACC...TACACCCTGGTGAGCCAGGGTGAGCTCTGTCTGTGCAGGGGCTGCCCCATTTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR GCA 90 bp | TCCCTGGCCTTGGGGCTCGAGGGCAGCCCAGGTGTCGGCCTTCTCCACAGCTGTAAAGTCCTCCTGCCCTaGGGTGTCCCAAAGCTCGAT | + |
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Preference number: 4 (lower is better) Translates to: SLALGLEGSPGVGLLHSCKVLLP*GVPKLD Trigger: ATCGAGCTTTGGGACACCGCAGGGCAGGAGGACTTT...ACAGCTGTGGAGAAGGCCGACACCTGGGCTGCCCTCGAGCCCCAAGGCCAGGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR GCA 90 bp | CAGAGCTCACCCTGGCTCACCAGGGTGTACAGCTTTGAGGCCCATGTGCCCTGTCGGTCAAAGTCCTCCTaGCCTGCGGTGTCCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: QSSPWLTRVYSFEAHVPCRSKSS*PAVSQS Trigger: GCTTTGGGACACCGCAGGGCAGGAGGACTTTGACCG...ACAGGGCACATGGGCCTCAAAGCTGTACACCCTGGTGAGCCAGGGTGAGCTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR GCA 90 bp | TCCCTGGCCTTGGGGCTCGAGGGCAGCCCAGGTGTCGGCCTTCTCCACAGCTGTTCCAGACGGGCTTTGTaGTCAATCGCACTGAGAATG | + |
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Preference number: 4 (lower is better) Translates to: SLALGLEGSPGVGLLHSCSRRAL*SIALRM Trigger: CATTCTCAGTGCGATTGAGCACAAAGCCCGTCTGGA...ACAGCTGTGGAGAAGGCCGACACCTGGGCTGCCCTCGAGCCCCAAGGCCAGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR CCA 90 bp | CAGGCCCAGGCCTCTAATCTGCCTCCTGTCCACCACTCGCCTCACTTTCTGTTTTTGGGGTTGTGGTACTaGGCCCTCCCGGCCTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: QAQASNLPPVHHSPHFLFLGLWY*ALPASL Trigger: CAAGGAGGCCGGGAGGGCCCAGTACCACAACCCCAA...AAACAGAAAGTGAGGCGAGTGGTGGACAGGAGGCAGATTAGAGGCCTGGGCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR GCA 90 bp | TCACCCTGGCTCACCAGGGTGTACAGCTTTGAGGCCCATGTGCCCTGTGTTCAATGGAAGGAGCTGGGCTaGACCACGCTGAAGCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: SPWLTRVYSFEAHVPCVQWKELG*TTLKQA Trigger: GGCTTGCTTCAGCGTGGTGCAGCCCAGCTCCTTCCA...TTGAACACAGGGCACATGGGCCTCAAAGCTGTACACCCTGGTGAGCCAGGGTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| 3UTR CAA 72 bp | GACAGAGCTCACCCTGGCTCACCAGGGTGTACAGCTTaGAGGCCCATGTGCCCTGTGTTCAATAGAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: DRAHPGSPGCTA*RPMCPVFNREL Trigger: CAGTTCTCTATTGAACACAGGGCACATGGGCCTCAAAGCTGTACACCCTGGTGAGCCAGGGTGAGCTCTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR GCA 90 bp | TCACCCTGGCTCACCAGGGTGTACAGCTTTGAGGCCCATGTGCCCTGTGTTCAATCCTTCAAGTTCTTCTaGGTCAAGGCCGAGCACTCA | + |
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Preference number: 4 (lower is better) Translates to: SPWLTRVYSFEAHVPCVQSFKFF*VKAEHS Trigger: TGAGTGCTCGGCCTTGACGCAGAAGAACTTGAAGGA...TTGAACACAGGGCACATGGGCCTCAAAGCTGTACACCCTGGTGAGCCAGGGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR CCA 90 bp | GTTTTATTTGCAGACTGTATAGCTCACCTTCTAAGCTATGACCTTGGGGAAAGGCTGGGCTTGGGGTTGTaGTACTGGGCCCTCCCGGCC | + |
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Preference number: 4 (lower is better) Translates to: VLFADCIAHLLSYDLGERLGLGL*YWALPA Trigger: GGCCGGGAGGGCCCAGTACCACAACCCCAAGCCCAG...CCTTTCCCCAAGGTCATAGCTTAGAAGGTGAGCTATACAGTCTGCAAATAAAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR TCA 90 bp | TGTACAGCTTTGAGGCCCATGTGCCCTGTGTTCAATAGAGAACTGAGTTCCAGGTGGGCTGCACCACGCTaGAGCAAGCCAGAAAGACAT | + |
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Preference number: 4 (lower is better) Translates to: CTALRPMCPVFNRELSSRWAAPR*SKPERH Trigger: ATGTCTTTCTGGCTTGCTTCAGCGTGGTGCAGCCCA...CCTGGAACTCAGTTCTCTATTGAACACAGGGCACATGGGCCTCAAAGCTGTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR GCA 90 bp | TGTACAGCTTTGAGGCCCATGTGCCCTGTGTTCAATAGAGAACTGAGTTCCAGGCTTGGGGGTTGTGAGTaGGGATCTCAGGCAGCCATT | + |
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Preference number: 4 (lower is better) Translates to: CTALRPMCPVFNRELSSRLGGCE*GSQAAI Trigger: AATGGCTGCCTGAGATCCGCACTCACAACCCCCAAG...CCTGGAACTCAGTTCTCTATTGAACACAGGGCACATGGGCCTCAAAGCTGTACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR CCA 90 bp | TGTACAGCTTTGAGGCCCATGTGCCCTGTGTTCAATAGAGAACTGAGTTCCAGGTTCTCAGCCAGACCCTaGGCTTGGGGTTGTGGTACT | + |
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Preference number: 4 (lower is better) Translates to: CTALRPMCPVFNRELSSRFSARP*AWGCGT Trigger: AGTACCACAACCCCAAGCCCAGGGTCTGGCTGAGAA...CCTGGAACTCAGTTCTCTATTGAACACAGGGCACATGGGCCTCAAAGCTGTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR CCA 90 bp | GCCTCTAATCTGCCTCCTGTCCACCACTCGCCTCACTTTCTGTTTTCCCTCTCATTTTCTGTTATGTTTTaGAAGGAGCTGGGCTGCACC | + |
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Preference number: 4 (lower is better) Translates to: ASNLPPVHHSPHFLFSLSFSVMF*KELGCT Trigger: GGTGCAGCCCAGCTCCTTCCAAAACATAACAGAAAA...TGAGAGGGAAAACAGAAAGTGAGGCGAGTGGTGGACAGGAGGCAGATTAGAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR TCA 90 bp | AATCTCTCACTGCCCTCTTCTTCATACCCCATCTCAAACGTCTCCAAATCAAGCACTGAATTAGTACATTaGCATCGTCCCTTAGGTCAG | + |
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Preference number: 4 (lower is better) Translates to: NLSLPSSSYPISNVSKSSTELVH*HRPLGQ Trigger: CTGACCTAAGGGACGATGTCAATGTACTAATTCAGT...GCTTGATTTGGAGACGTTTGAGATGGGGTATGAAGAAGAGGGCAGTGAGAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR CAA 90 bp | AACCCTGAGACCCAGTTCTTCCCAGGGAGCAGTCCTGTCCTCCCTGGCCTTGGGCCCACCAGCACGCATTaGATGCCCAGCTCCGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: NPETQFFPGSSPVLPGLGPTSTH*MPSSGG Trigger: CCCTCCGGAGCTGGGCATCAAATGCGTGCTGGTGGG...CCCAAGGCCAGGGAGGACAGGACTGCTCCCTGGGAAGAACTGGGTCTCAGGGTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS TCA 90 bp | GTACTGGGCCCTCCCGGCCTCCTTGGTCCAACTGAATTAGTACATTaGCATCGTCCCTTAGGTCAGCCTGAGTGCCCACCAGCAACACGG | + |
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Preference number: 5 (lower is better) Translates to: VLGPPGLLGPTELVH*HRPLGQPECPPATR Trigger: CCGTGTTGCTGGTGGGCACTCAGGCTGACCTAAGGGACGATGTCAATGTACTAATTCAGTTGGACCAAGGAGGCCGGGAGGGCCCAGTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS-3UTR CAA 90 bp | CAGAGCTCACCCTGGCTCACCAGGGTGTACAGCTTTGAGGCCCATGTGCCCTGTGCGTGCGCACACCTTTaGCGTTCAGTTTCTTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: QSSPWLTRVYSFEAHVPCACAHL*RSVSSP Trigger: TGGAGAAGAAACTGAACGCAAAAGGTGTGCGCACGC...ACAGGGCACATGGGCCTCAAAGCTGTACACCCTGGTGAGCCAGGGTGAGCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS GCA 90 bp | GTGCGCACACCTTTTGCGTTCAGTTTCTTCTCCAGACGGGCTTTGTaGTCAATCGCACTGAGAATGGCCGAGTCGAACACCTCCTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: VRTPFAFSFFSRRAL*SIALRMAESNTSFK Trigger: CTTGAAGGAGGTGTTCGACTCGGCCATTCTCAGTGCGATTGAGCACAAAGCCCGTCTGGAGAAGAAACTGAACGCAAAAGGTGTGCGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS GCA 90 bp | GAAGAACTTCTTCCAGCGACAGCGAGACAGCGTGCGCACACCTTTTaGGTTCAGTTTCTTCTCCAGACGGGCTTTGTGCTCAATCGCACT | + |
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Preference number: 5 (lower is better) Translates to: EELLPATARQRAHTF*VQFLLQTGFVLNRT Trigger: AGTGCGATTGAGCACAAAGCCCGTCTGGAGAAGAAACTGAACGCAAAAGGTGTGCGCACGCTGTCTCGCTGTCGCTGGAAGAAGTTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS TCA 90 bp | TTGCGTTCAGTTTCTTCTCCAGACGGGCTTTGTGCTCAATCGCACTaGGAATGGCCGAGTCGAACACCTCCTTCAAGTTCTTCTGCGTCA | + |
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Preference number: 5 (lower is better) Translates to: LRSVSSPDGLCAQSH*EWPSRTPPSSSSAS Trigger: TGACGCAGAAGAACTTGAAGGAGGTGTTCGACTCGGCCATTCTCAGTGCGATTGAGCACAAAGCCCGTCTGGAGAAGAAACTGAACGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS GCA 72 bp | GCAGAGAGAACGAAGCCGGTCAAAGTCCTCCTGCCCTaGGGTGTCCCAAAGCTCGATTCGCACAGGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: AERTKPVKVLLP*GVPKLDSHRGS Trigger: GGAGCCCCTGTGCGAATCGAGCTTTGGGACACCGCAGGGCAGGAGGACTTTGACCGGCTTCGTTCTCTCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS GCA 72 bp | CTTCCAGCGACAGCGAGACAGCGTGCGCACACCTTTTaGGTTCAGTTTCTTCTCCAGACGGGCTTTGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: LPATARQRAHTF*VQFLLQTGFVL Trigger: GAGCACAAAGCCCGTCTGGAGAAGAAACTGAACGCAAAAGGTGTGCGCACGCTGTCTCGCTGTCGCTGGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS TCA 72 bp | CTGTTATGTTTTGGAAGGAGCTGGGCTGCACCACGCTaGAGCAAGCCAGAAAGACATCGGTGTCCGGGTAGC | + |
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Preference number: 6 (lower is better) Translates to: LLCFGRSWAAPR*SKPERHRCPGS Trigger: GCTACCCGGACACCGATGTCTTTCTGGCTTGCTTCAGCGTGGTGCAGCCCAGCTCCTTCCAAAACATAACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS TCA 72 bp | CCTCCCGGCCTCCTTGGTCCAACTGAATTAGTACATTaGCATCGTCCCTTAGGTCAGCCTGAGTGCCCACCA | + |
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Preference number: 6 (lower is better) Translates to: PPGLLGPTELVH*HRPLGQPECPP Trigger: TGGTGGGCACTCAGGCTGACCTAAGGGACGATGTCAATGTACTAATTCAGTTGGACCAAGGAGGCCGGGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS TCA 72 bp | TGTGGTACTGGGCCCTCCCGGCCTCCTTGGTCCAACTaGATTAGTACATTGACATCGTCCCTTAGGTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: CGTGPSRPPWSN*ISTLTSSLRSA Trigger: GGCTGACCTAAGGGACGATGTCAATGTACTAATTCAGTTGGACCAAGGAGGCCGGGAGGGCCCAGTACCACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS CAA 72 bp | TCTTCCAGCGACAGCGAGACAGCGTGCGCACACCTTTaGCGTTCAGTTTCTTCTCCAGACGGGCTTTGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SSSDSETACAHL*RSVSSPDGLCA Trigger: AGCACAAAGCCCGTCTGGAGAAGAAACTGAACGCAAAAGGTGTGCGCACGCTGTCTCGCTGTCGCTGGAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS CAA 90 bp | AGCGTGCGCACACCTTTTGCGTTCAGTTTCTTCTCCAGACGGGCTTaGTGCTCAATCGCACTGAGAATGGCCGAGTCGAACACCTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: SVRTPFAFSFFSRRA*CSIALRMAESNTSF Trigger: GAAGGAGGTGTTCGACTCGGCCATTCTCAGTGCGATTGAGCACAAAGCCCGTCTGGAGAAGAAACTGAACGCAAAAGGTGTGCGCACGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS CAA 90 bp | AGAAGAACTTCTTCCAGCGACAGCGAGACAGCGTGCGCACACCTTTaGCGTTCAGTTTCTTCTCCAGACGGGCTTTGTGCTCAATCGCAC | + |
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Preference number: 6 (lower is better) Translates to: RRTSSSDSETACAHL*RSVSSPDGLCAQSH Trigger: GTGCGATTGAGCACAAAGCCCGTCTGGAGAAGAAACTGAACGCAAAAGGTGTGCGCACGCTGTCTCGCTGTCGCTGGAAGAAGTTCTTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS GCA 72 bp | TGCCCACCAGCAACACGGGTGCTTGGGGGTTGTGAGTaGGGATCTCAGGCAGCCATTTTTCTGTTATGTTTT | + |
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Preference number: 6 (lower is better) Translates to: CPPATRVLGGCE*GSQAAIFLLCF Trigger: AAAACATAACAGAAAAATGGCTGCCTGAGATCCGCACTCACAACCCCCAAGCACCCGTGTTGCTGGTGGGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS GCA 72 bp | CCTTTTGCGTTCAGTTTCTTCTCCAGACGGGCTTTGTaGTCAATCGCACTGAGAATGGCCGAGTCGAACACC | + |
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Preference number: 6 (lower is better) Translates to: PFAFSFFSRRAL*SIALRMAESNT Trigger: GGTGTTCGACTCGGCCATTCTCAGTGCGATTGAGCACAAAGCCCGTCTGGAGAAGAAACTGAACGCAAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS GCA 72 bp | AGCAGAAGAACTTCTTCCAGCGACAGCGAGACAGCGTaGGCACACCTTTTGCGTTCAGTTTCTTCTCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: SRRTSSSDSETA*AHLLRSVSSPD Trigger: GTCTGGAGAAGAAACTGAACGCAAAAGGTGTGCGCACGCTGTCTCGCTGTCGCTGGAAGAAGTTCTTCTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS TCA 72 bp | GTTTCTTCTCCAGACGGGCTTTGTGCTCAATCGCACTaGGAATGGCCGAGTCGAACACCTCCTTCAAGTTCT | + |
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Preference number: 6 (lower is better) Translates to: VSSPDGLCAQSH*EWPSRTPPSSS Trigger: AGAACTTGAAGGAGGTGTTCGACTCGGCCATTCTCAGTGCGATTGAGCACAAAGCCCGTCTGGAGAAGAAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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| CDS CAA 72 bp | ACACCTTTTGCGTTCAGTTTCTTCTCCAGACGGGCTTaGTGCTCAATCGCACTGAGAATGGCCGAGTCGAAC | + |
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Preference number: 6 (lower is better) Translates to: TPFAFSFFSRRA*CSIALRMAESN Trigger: GTTCGACTCGGCCATTCTCAGTGCGATTGAGCACAAAGCCCGTCTGGAGAAGAAACTGAACGCAAAAGGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037360.8 |
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