Pregenerated sensors for RHOQ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024143Ensembl transcript IDs: ENSMUST00000024956.15, ENSMUST00000234309.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGAAATGTAGCGTGGCTGGAGGAAGGGTCTTGGGAAGGCAGCAGTaGTCTGCTCGCCTCTCACTAGGTGTGTGCGTAAGCTGTGGGTTG | + |
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Preference number: 1 (lower is better) Translates to: VKCSVAGGRVLGRQQ*SARLSLGVCVSCGL Trigger: CAACCCACAGCTTACGCACACACCTAGTGAGAGGCGAGCAGAGCACTGCTGCCTTCCCAAGACCCTTCCTCCAGCCACGCTACATTTCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CCA 90 bp | CCGTCTGCGAGAGTTCACGTGGTCTATGTACAAGGTCTTACCATCTaGAGAAGGTGGAGGCCAGCCATGACTGCTGTCAGTCGGAGGAGA | + |
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Preference number: 1 (lower is better) Translates to: PSARVHVVYVQGLTI*RRWRPAMTAVSRRR Trigger: TCTCCTCCGACTGACAGCAGTCATGGCTGGCCTCCACCTTCTCCAGATGGTAAGACCTTGTACATAGACCACGTGAACTCTCGCAGACGG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR TCA 90 bp | GCCATGACTGCTGTCAGTCGGAGGAGAGTGCTCAGAGCTCATGAATaGCTGGGACAAGAGGTTGTCCCCGTGATCAAACATGAGGAGACT | + |
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Preference number: 1 (lower is better) Translates to: AMTAVSRRRVLRAHE*LGQEVVPVIKHEET Trigger: AGTCTCCTCATGTTTGATCACGGGGACAACCTCTTGTCCCAGTCATTCATGAGCTCTGAGCACTCTCCTCCGACTGACAGCAGTCATGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CCA 90 bp | AGAGTTCACGTGGTCTATGTACAAGGTCTTACCATCTGGAGAAGGTaGAGGCCAGCCATGACTGCTGTCAGTCGGAGGAGAGTGCTCAGA | + |
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Preference number: 1 (lower is better) Translates to: RVHVVYVQGLTIWRR*RPAMTAVSRRRVLR Trigger: TCTGAGCACTCTCCTCCGACTGACAGCAGTCATGGCTGGCCTCCACCTTCTCCAGATGGTAAGACCTTGTACATAGACCACGTGAACTCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR TCA 90 bp | TCTATGTACAAGGTCTTACCATCTGGAGAAGGTGGAGGCCAGCCATaGCTGCTGTCAGTCGGAGGAGAGTGCTCAGAGCTCATGAATGAC | + |
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Preference number: 1 (lower is better) Translates to: SMYKVLPSGEGGGQP*LLSVGGECSELMND Trigger: GTCATTCATGAGCTCTGAGCACTCTCCTCCGACTGACAGCAGTCATGGCTGGCCTCCACCTTCTCCAGATGGTAAGACCTTGTACATAGA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR TCA 90 bp | CGCTTAGACCTTTCTGAAACATTCTCAATGAACTCTGTAGAATGCTaGGGACAGGTTCCCTCCCTCCTCAAGTTAAACTGCTTCACTGTA | + |
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Preference number: 1 (lower is better) Translates to: RLDLSETFSMNSVEC*GQVPSLLKLNCFTV Trigger: TACAGTGAAGCAGTTTAACTTGAGGAGGGAGGGAACCTGTCCTCAGCATTCTACAGAGTTCATTGAGAATGTTTCAGAAAGGTCTAAGCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024956.15 ENSMUST00000234309.2 |
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| 3UTR TCA 90 bp | CACGTTCAGATTCTGAATCCGTTTCTCTTGGAGCAGGAAAGTCCTTaGCTTAAACTCATTGCCAACACCAAGTGTCAAGGGTTTCACAGA | + |
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Preference number: 1 (lower is better) Translates to: HVQILNPFLLEQESP*LKLIANTKCQGFHR Trigger: TCTGTGAAACCCTTGACACTTGGTGTTGGCAATGAGTTTAAGTCAAGGACTTTCCTGCTCCAAGAGAAACGGATTCAGAATCTGAACGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | ACTCCGAGCCCCATCCAGGTAAATAGAGCACCTAAGGCACCTCAGGTTCGGGTGCTGGAGGAAGGGTCTTaGGAAGGCAGCAGTGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: TPSPIQVNRAPKAPQVRVLEEGS*EGSSAL Trigger: CAGAGCACTGCTGCCTTCCCAAGACCCTTCCTCCAG...CACCCGAACCTGAGGTGCCTTAGGTGCTCTATTTACCTGGATGGGGCTCGGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CAA 90 bp | ATTATCTCTGGCTTAGTGAAATGTAGCGTGGCTGGAGGAAGGGTCTaGGGAAGGCAGCAGTGCTCTGCTCGCCTCTCACTAGGTGTGTGC | + |
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Preference number: 2 (lower is better) Translates to: IISGLVKCSVAGGRV*GRQQCSARLSLGVC Trigger: GCACACACCTAGTGAGAGGCGAGCAGAGCACTGCTGCCTTCCCAAGACCCTTCCTCCAGCCACGCTACATTTCACTAAGCCAGAGATAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR TCA 90 bp | GTAAATAGAGCACCTAAGGCACCTCAGGTTCGGGTGATGCAGCCGTCTGCGAGAAGTGCTCAGAGCTCATaGATGACTGGGACAAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: VNRAPKAPQVRVMQPSARSAQSS*MTGTRG Trigger: ACCTCTTGTCCCAGTCATTCATGAGCTCTGAGCACT...TCTCGCAGACGGCTGCATCACCCGAACCTGAGGTGCCTTAGGTGCTCTATTTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR GCA 90 bp | GTAAATAGAGCACCTAAGGCACCTCAGGTTCGGGTGATGCAGCCGTCTGCGAGAAATGTGAACCACCACTaGCTGAAGACATACTGTGCC | + |
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Preference number: 2 (lower is better) Translates to: VNRAPKAPQVRVMQPSARNVNHH*LKTYCA Trigger: GGCACAGTATGTCTTCAGGCAGTGGTGGTTCACATT...TCTCGCAGACGGCTGCATCACCCGAACCTGAGGTGCCTTAGGTGCTCTATTTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR TCA 90 bp | ACTCCGAGCCCCATCCAGGTAAATAGAGCACCTAAGGCACCTCAGGTTCGGGTGCCGCTTAGACCTTTCTaGAACATTCTCAATGAACTC | + |
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Preference number: 2 (lower is better) Translates to: TPSPIQVNRAPKAPQVRVPLRPF*NILNEL Trigger: GAGTTCATTGAGAATGTTTCAGAAAGGTCTAAGCGG...CACCCGAACCTGAGGTGCCTTAGGTGCTCTATTTACCTGGATGGGGCTCGGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR TCA 90 bp | ACTCCGAGCCCCATCCAGGTAAATAGAGCACCTAAGGCACCTCAGGTTCGGGTGAAGAAGAAAGCCAAATaGGGTTCCAGCCAGTTAGTA | + |
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Preference number: 2 (lower is better) Translates to: TPSPIQVNRAPKAPQVRVKKKAK*GSSQLV Trigger: TACTAACTGGCTGGAACCTCATTTGGCTTTCTTCTT...CACCCGAACCTGAGGTGCCTTAGGTGCTCTATTTACCTGGATGGGGCTCGGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR GCA 90 bp | TGGAGGCCAGCCATGACTGCTGTCAGTCGGAGGAGAGTGCTCAGAGCTCATGAACTCCTCAAGTTAAACTaGTTCACTGTAAGAGGTCAG | + |
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Preference number: 2 (lower is better) Translates to: WRPAMTAVSRRRVLRAHELLKLN*FTVRGQ Trigger: CTGACCTCTTACAGTGAAGCAGTTTAACTTGAGGAG...TTCATGAGCTCTGAGCACTCTCCTCCGACTGACAGCAGTCATGGCTGGCCTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR GCA 90 bp | GTGATCAAACATGAGGAGACTGAGGTGACACCAGTGCACGTTCAGATTCTGAATGTGGGTTGTGCCTTCTaGTGTGGATGTGCTAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: VIKHEETEVTPVHVQILNVGCAF*CGCASC Trigger: GCAGCTAGCACATCCACAGCAGAAGGCACAACCCAC...ATTCAGAATCTGAACGTGCACTGGTGTCACCTCAGTCTCCTCATGTTTGATCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | TGGAGGCCAGCCATGACTGCTGTCAGTCGGAGGAGAGTGCTCAGAGCTCATGAAGTGGGAATTAGAAAATaGCCAACTAATTCAGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: WRPAMTAVSRRRVLRAHEVGIRK*PTNSES Trigger: GCTCTCTGAATTAGTTGGCCATTTTCTAATTCCCAC...TTCATGAGCTCTGAGCACTCTCCTCCGACTGACAGCAGTCATGGCTGGCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | TATGTACAAGGTCTTACCATCTGGAGAAGGTGGAGGCCAGCCATGACTGCTGTCGCTGGTAAGAATGCCTaGGTTAGAATCTGCTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: YVQGLTIWRRWRPAMTAVAGKNA*VRICFP Trigger: AGGGAAGCAGATTCTAACCCAGGCATTCTTACCAGC...GACAGCAGTCATGGCTGGCCTCCACCTTCTCCAGATGGTAAGACCTTGTACATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | GTGATCAAACATGAGGAGACTGAGGTGACACCAGTGCACGTTCAGATTCTGAATTGTGCAGAAGTTACATaGTCCAAGCCGGGCAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: VIKHEETEVTPVHVQILNCAEVT*SKPGSP Trigger: TGGACTGCCCGGCTTGGACCATGTAACTTCTGCACA...ATTCAGAATCTGAACGTGCACTGGTGTCACCTCAGTCTCCTCATGTTTGATCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | GTAAATAGAGCACCTAAGGCACCTCAGGTTCGGGTGATGCAGCCGTCTGCGAGATGTATACAGCCAATGTaGGAATTAGAAAATGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: VNRAPKAPQVRVMQPSARCIQPM*ELENGQ Trigger: TTGGCCATTTTCTAATTCCCACATTGGCTGTATACA...TCTCGCAGACGGCTGCATCACCCGAACCTGAGGTGCCTTAGGTGCTCTATTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR TCA 90 bp | TTTCTTCTGCAACCTAAGCCATTAATGAAGCTATATGCGTCTGAAAATAAGGCAATGAGGAGACTGAGGTaGCACCAGTGCACGTTCAGA | + |
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Preference number: 2 (lower is better) Translates to: FLLQPKPLMKLYASENKAMRRLR*HQCTFR Trigger: TCTGAACGTGCACTGGTGTCACCTCAGTCTCCTCAT...TGCCTTATTTTCAGACGCATATAGCTTCATTAATGGCTTAGGTTGCAGAAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR GCA 90 bp | GAAATACTAAATAACAAACACAAAGAGCTCTTAACAAGCAATGGGAAACTCCGATTGGGAAGGCAGCAGTaGTCTGCTCGCCTCTCACTA | + |
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Preference number: 2 (lower is better) Translates to: EILNNKHKELLTSNGKLRLGRQQ*SARLSL Trigger: TAGTGAGAGGCGAGCAGAGCACTGCTGCCTTCCCAA...TCGGAGTTTCCCATTGCTTGTTAAGAGCTCTTTGTGTTTGTTATTTAGTATTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CAA 90 bp | AACTCATTGCCAACACCAAGTGTCAAGGGTTTCACAGATGTGGATTaGAAGAAAAGAACAAGCCATCAAATCTCCACAGGCAACTTGGAA | + |
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Preference number: 2 (lower is better) Translates to: NSLPTPSVKGFTDVD*KKRTSHQISTGNLE Trigger: TTCCAAGTTGCCTGTGGAGATTTGATGGCTTGTTCTTTTCTTCAAATCCACATCTGTGAAACCCTTGACACTTGGTGTTGGCAATGAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | GTGATCAAACATGAGGAGACTGAGGTGACACCAGTGCACGTTCAGATTCTGAATTCTCCACAGGCAACTTaGAAACGAATAATACTTTAC | + |
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Preference number: 2 (lower is better) Translates to: VIKHEETEVTPVHVQILNSPQAT*KRIILY Trigger: GTAAAGTATTATTCGTTTCCAAGTTGCCTGTGGAGA...ATTCAGAATCTGAACGTGCACTGGTGTCACCTCAGTCTCCTCATGTTTGATCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR TCA 90 bp | GAAATACTAAATAACAAACACAAAGAGCTCTTAACAAGCAATGGGAAACTCCGACTCAGAGCTCATGAATaGCTGGGACAAGAGGTTGTC | + |
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Preference number: 2 (lower is better) Translates to: EILNNKHKELLTSNGKLRLRAHE*LGQEVV Trigger: GACAACCTCTTGTCCCAGTCATTCATGAGCTCTGAG...TCGGAGTTTCCCATTGCTTGTTAAGAGCTCTTTGTGTTTGTTATTTAGTATTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR GCA 90 bp | GAAATACTAAATAACAAACACAAAGAGCTCTTAACAAGCAATGGGAAACTCCGATCAGTCGGAGGAGAGTaGTCAGAGCTCATGAATGAC | + |
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Preference number: 2 (lower is better) Translates to: EILNNKHKELLTSNGKLRSVGGE*SELMND Trigger: GTCATTCATGAGCTCTGAGCACTCTCCTCCGACTGA...TCGGAGTTTCCCATTGCTTGTTAAGAGCTCTTTGTGTTTGTTATTTAGTATTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR GCA 90 bp | GCACAAACCATGGAAGATAACAGAAGCTTGCTAAAGACAAGTCGTAGTTTAAGCTACACTACTGTCTGTTaGATGGCATTTAGAATAAGG | + |
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Preference number: 2 (lower is better) Translates to: AQTMEDNRSLLKTSRSLSYTTVC*MAFRIR Trigger: CCTTATTCTAAATGCCATGCAACAGACAGTAGTGTA...GCTTAAACTACGACTTGTCTTTAGCAAGCTTCTGTTATCTTCCATGGTTTGTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | AGTGTCAAGGGTTTCACAGATGTGGATTTGAAGAAAAGAACAAGCCATCAAATCCTTAAGCACAAACCATaGAAGATAACAGAAGCTTGC | + |
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Preference number: 2 (lower is better) Translates to: SVKGFTDVDLKKRTSHQILKHKP*KITEAC Trigger: GCAAGCTTCTGTTATCTTCCATGGTTTGTGCTTAAG...GATTTGATGGCTTGTTCTTTTCTTCAAATCCACATCTGTGAAACCCTTGACACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTCTGCAACCTAAGCCATTAATGAAGCTATATGCGTCTGAAAATAAGGCACACATACCCTGTCTGTaGCATTACAAAGAAAAGTCA | + |
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Preference number: 2 (lower is better) Translates to: FLLQPKPLMKLYASENKAHIPCL*HYKEKS Trigger: TGACTTTTCTTTGTAATGCCACAGACAGGGTATGTG...TGCCTTATTTTCAGACGCATATAGCTTCATTAATGGCTTAGGTTGCAGAAGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR TCA 90 bp | GAAATACTAAATAACAAACACAAAGAGCTCTTAACAAGCAATGGGAAACTCCGACTTTACAAAGGAGCATaGAAGTTTGTTTCCAAGACG | + |
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Preference number: 2 (lower is better) Translates to: EILNNKHKELLTSNGKLRLYKGA*KFVSKT Trigger: CGTCTTGGAAACAAACTTTCATGCTCCTTTGTAAAG...TCGGAGTTTCCCATTGCTTGTTAAGAGCTCTTTGTGTTTGTTATTTAGTATTTC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTCTGCAACCTAAGCCATTAATGAAGCTATATGCGTCTGAAAATAAGGCACAGACCAAAACTAAATaGGAAAATTACAGAAGTCCC | + |
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Preference number: 2 (lower is better) Translates to: FLLQPKPLMKLYASENKAQTKTK*ENYRSP Trigger: GGGACTTCTGTAATTTTCCCATTTAGTTTTGGTCTG...TGCCTTATTTTCAGACGCATATAGCTTCATTAATGGCTTAGGTTGCAGAAGAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTCTGCAACCTAAGCCATTAATGAAGCTATATGCGTCTGAAAATAAGGCAAATACTTTACTGTCTTaGTTCCTTCAGATCATAGGT | + |
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Preference number: 2 (lower is better) Translates to: FLLQPKPLMKLYASENKANTLLS*FLQIIG Trigger: ACCTATGATCTGAAGGAACCAAGACAGTAAAGTATT...TGCCTTATTTTCAGACGCATATAGCTTCATTAATGGCTTAGGTTGCAGAAGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR GCA 72 bp | GGCTGGAGGAAGGGTCTTGGGAAGGCAGCAGTGCTCTaGTCGCCTCTCACTAGGTGTGTGCGTAAGCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: GWRKGLGKAAVL*SPLTRCVRKLW Trigger: CCACAGCTTACGCACACACCTAGTGAGAGGCGAGCAGAGCACTGCTGCCTTCCCAAGACCCTTCCTCCAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR TCA 72 bp | GACTGCTGTCAGTCGGAGGAGAGTGCTCAGAGCTCATaGATGACTGGGACAAGAGGTTGTCCCCGTGATCAA | + |
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Preference number: 3 (lower is better) Translates to: DCCQSEESAQSS*MTGTRGCPRDQ Trigger: TTGATCACGGGGACAACCTCTTGTCCCAGTCATTCATGAGCTCTGAGCACTCTCCTCCGACTGACAGCAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CCA 72 bp | GTGGTCTATGTACAAGGTCTTACCATCTGGAGAAGGTaGAGGCCAGCCATGACTGCTGTCAGTCGGAGGAGA | + |
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Preference number: 3 (lower is better) Translates to: VVYVQGLTIWRR*RPAMTAVSRRR Trigger: TCTCCTCCGACTGACAGCAGTCATGGCTGGCCTCCACCTTCTCCAGATGGTAAGACCTTGTACATAGACCAC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CAA 90 bp | TATGTACAAGGTCTTACCATCTGGAGAAGGTGGAGGCCAGCCATGACTGCTGTCTGCCTGCAGTACACTTaGATGGCCTATTCCCCGGAG | + |
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Preference number: 3 (lower is better) Translates to: YVQGLTIWRRWRPAMTAVCLQYT*MAYSPE Trigger: CTCCGGGGAATAGGCCATCAAAGTGTACTGCAGGCA...GACAGCAGTCATGGCTGGCCTCCACCTTCTCCAGATGGTAAGACCTTGTACATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR TCA 72 bp | GCTGTCAGTCGGAGGAGAGTGCTCAGAGCTCATGAATaGCTGGGACAAGAGGTTGTCCCCGTGATCAAACAT | + |
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Preference number: 3 (lower is better) Translates to: AVSRRRVLRAHE*LGQEVVPVIKH Trigger: ATGTTTGATCACGGGGACAACCTCTTGTCCCAGTCATTCATGAGCTCTGAGCACTCTCCTCCGACTGACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR GCA 72 bp | GCTGTGGGTTGTGCCTTCTGCTGTGGATGTGCTAGCTaGAGCTCCAAGCGGACATCAGTTTTACTATGGAAG | + |
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Preference number: 3 (lower is better) Translates to: AVGCAFCCGCAS*SSKRTSVLLWK Trigger: CTTCCATAGTAAAACTGATGTCCGCTTGGAGCTGCAGCTAGCACATCCACAGCAGAAGGCACAACCCACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR GCA 72 bp | GTAAGAATGCCTGGGTTAGAATCTGCTTCCCTCCACTaGAGGAGGTGGTTCCCATGGGAGCTTTGTCTACAC | + |
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Preference number: 3 (lower is better) Translates to: VRMPGLESASLH*RRWFPWELCLH Trigger: GTGTAGACAAAGCTCCCATGGGAACCACCTCCTGCAGTGGAGGGAAGCAGATTCTAACCCAGGCATTCTTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR GCA 72 bp | CTAAAGAAGGCTGGTAAGAATGCCTGGGTTAGAATCTaGTTCCCTCCACTGCAGGAGGTGGTTCCCATGGGA | + |
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Preference number: 3 (lower is better) Translates to: LKKAGKNAWVRI*FPPLQEVVPMG Trigger: TCCCATGGGAACCACCTCCTGCAGTGGAGGGAAGCAGATTCTAACCCAGGCATTCTTACCAGCCTTCTTTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CCA 72 bp | GCTAGCTGCAGCTCCAAGCGGACATCAGTTTTACTATaGAAGCAGATATCCACAAATCCCACAGGACGCGCT | + |
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Preference number: 3 (lower is better) Translates to: ASCSSKRTSVLL*KQISTNPTGRA Trigger: AGCGCGTCCTGTGGGATTTGTGGATATCTGCTTCCATAGTAAAACTGATGTCCGCTTGGAGCTGCAGCTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CCA 72 bp | AGAGTTCACGTGGTCTATGTACAAGGTCTTACCATCTaGAGAAGGTGGAGGCCAGCCATGACTGCTGTCAGT | + |
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Preference number: 3 (lower is better) Translates to: RVHVVYVQGLTI*RRWRPAMTAVS Trigger: ACTGACAGCAGTCATGGCTGGCCTCCACCTTCTCCAGATGGTAAGACCTTGTACATAGACCACGTGAACTCT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CCA 72 bp | GCAAATTTGAACCTAAAGAAGGCTGGTAAGAATGCCTaGGTTAGAATCTGCTTCCCTCCACTGCAGGAGGTG | + |
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Preference number: 3 (lower is better) Translates to: ANLNLKKAGKNA*VRICFPPLQEV Trigger: CACCTCCTGCAGTGGAGGGAAGCAGATTCTAACCCAGGCATTCTTACCAGCCTTCTTTAGGTTCAAATTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CAA 90 bp | AGTGTCAAGGGTTTCACAGATGTGGATTTGAAGAAAAGAACAAGCCATCAAATCGCTGGAGGAAGGGTCTaGGGAAGGCAGCAGTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: SVKGFTDVDLKKRTSHQIAGGRV*GRQQCS Trigger: AGAGCACTGCTGCCTTCCCAAGACCCTTCCTCCAGC...GATTTGATGGCTTGTTCTTTTCTTCAAATCCACATCTGTGAAACCCTTGACACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CAA 90 bp | GTAAATAGAGCACCTAAGGCACCTCAGGTTCGGGTGATGCAGCCGTCTGCGAGAATCTCCACAGGCAACTaGGAAACGAATAATACTTTA | + |
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Preference number: 3 (lower is better) Translates to: VNRAPKAPQVRVMQPSARISTGN*ETNNTL Trigger: TAAAGTATTATTCGTTTCCAAGTTGCCTGTGGAGAT...TCTCGCAGACGGCTGCATCACCCGAACCTGAGGTGCCTTAGGTGCTCTATTTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR TCA 72 bp | CTTTCTGAAACATTCTCAATGAACTCTGTAGAATGCTaGGGACAGGTTCCCTCCCTCCTCAAGTTAAACTGC | + |
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Preference number: 3 (lower is better) Translates to: LSETFSMNSVEC*GQVPSLLKLNC Trigger: GCAGTTTAACTTGAGGAGGGAGGGAACCTGTCCTCAGCATTCTACAGAGTTCATTGAGAATGTTTCAGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024956.15 ENSMUST00000234309.2 |
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| 3UTR-3UTR CAA 90 bp | AGTGTCAAGGGTTTCACAGATGTGGATTTGAAGAAAAGAACAAGCCATCAAATCTCCAGGAGAACACTCTaGTCCAGTAGACTGTCCACT | + |
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Preference number: 3 (lower is better) Translates to: SVKGFTDVDLKKRTSHQISRRTL*SSRLST Trigger: AGTGGACAGTCTACTGGACAAGAGTGTTCTCCTGGA...GATTTGATGGCTTGTTCTTTTCTTCAAATCCACATCTGTGAAACCCTTGACACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CCA 72 bp | GTTTGTTTCCAAGACGTTCCACACATACCCTGTCTGTaGCATTACAAAGAAAAGTCACCATTATTATCTCTG | + |
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Preference number: 3 (lower is better) Translates to: VCFQDVPHIPCL*HYKEKSPLLSL Trigger: CAGAGATAATAATGGTGACTTTTCTTTGTAATGCCACAGACAGGGTATGTGTGGAACGTCTTGGAAACAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CCA 72 bp | AGAAAAGAACAAGCCATCAAATCTCCACAGGCAACTTaGAAACGAATAATACTTTACTGTCTTGGTTCCTTC | + |
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Preference number: 3 (lower is better) Translates to: RKEQAIKSPQAT*KRIILYCLGSF Trigger: GAAGGAACCAAGACAGTAAAGTATTATTCGTTTCCAAGTTGCCTGTGGAGATTTGATGGCTTGTTCTTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR-3UTR CAA 90 bp | GAAATACTAAATAACAAACACAAAGAGCTCTTAACAAGCAATGGGAAACTCCGATTCACAGATGTGGATTaGAAGAAAAGAACAAGCCAT | + |
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Preference number: 3 (lower is better) Translates to: EILNNKHKELLTSNGKLRFTDVD*KKRTSH Trigger: ATGGCTTGTTCTTTTCTTCAAATCCACATCTGTGAA...TCGGAGTTTCCCATTGCTTGTTAAGAGCTCTTTGTGTTTGTTATTTAGTATTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CAA 72 bp | GGCTTAGTGAAATGTAGCGTGGCTGGAGGAAGGGTCTaGGGAAGGCAGCAGTGCTCTGCTCGCCTCTCACTA | + |
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Preference number: 4 (lower is better) Translates to: GLVKCSVAGGRV*GRQQCSARLSL Trigger: TAGTGAGAGGCGAGCAGAGCACTGCTGCCTTCCCAAGACCCTTCCTCCAGCCACGCTACATTTCACTAAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| CDS-3UTR CCA 90 bp | CCTGGGTTAGAATCTGCTTCCCTCCACTGCAGGAGGTGGTTCCCATGGGAGCTTATTTTGAAACGAGGCTaGATTTACCACGGAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: PGLESASLHCRRWFPWELILKRG*IYHGEA Trigger: TGCTTCTCCGTGGTAAATCCAGCCTCGTTTCAAAAT...AAGCTCCCATGGGAACCACCTCCTGCAGTGGAGGGAAGCAGATTCTAACCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CAA 72 bp | CCAACACCAAGTGTCAAGGGTTTCACAGATGTGGATTaGAAGAAAAGAACAAGCCATCAAATCTCCACAGGC | + |
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Preference number: 4 (lower is better) Translates to: PTPSVKGFTDVD*KKRTSHQISTG Trigger: GCCTGTGGAGATTTGATGGCTTGTTCTTTTCTTCAAATCCACATCTGTGAAACCCTTGACACTTGGTGTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CAA 72 bp | TTCTCTTGGAGCAGGAAAGTCCTTGACTTAAACTCATaGCCAACACCAAGTGTCAAGGGTTTCACAGATGTG | + |
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Preference number: 4 (lower is better) Translates to: FSWSRKVLDLNS*PTPSVKGFTDV Trigger: CACATCTGTGAAACCCTTGACACTTGGTGTTGGCAATGAGTTTAAGTCAAGGACTTTCCTGCTCCAAGAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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| 3UTR CAA 72 bp | AAGAAAAGAACAAGCCATCAAATCTCCACAGGCAACTaGGAAACGAATAATACTTTACTGTCTTGGTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: KKRTSHQISTGN*ETNNTLLSWFL Trigger: AAGGAACCAAGACAGTAAAGTATTATTCGTTTCCAAGTTGCCTGTGGAGATTTGATGGCTTGTTCTTTTCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024956.15 |
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