Pregenerated sensors for RHOJ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046768Ensembl transcript IDs: ENSMUST00000055390.6, ENSMUST00000118602.8, ENSMUST00000118966.8, ENSMUST00000172981.2
Found 145 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCTGGTCACGCCCTCCTTTTTGGCTAGAGTTGGGTCACAGAGACTaGCTGCCCTCCATGCCCTTGCATGGCGGGGAGATGGGTGTCAGG | + |
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Preference number: 1 (lower is better) Translates to: FWSRPPFWLELGHRD*LPSMPLHGGEMGVR Trigger: CCTGACACCCATCTCCCCGCCATGCAAGGGCATGGAGGGCAGCCAGTCTCTGTGACCCAACTCTAGCCAAAAAGGAGGGCGTGACCAGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR TCA 90 bp | ACTGCGCTCCAATCGCTTTCGCCAGCTTCACGCCGTGCTCATAGGTaGGGGGCTTCTCCTTCATGTACAGCAGACGCGCCAAGGTTTTGG | + |
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Preference number: 1 (lower is better) Translates to: TALQSLSPASRRAHR*GASPSCTADAPRFW Trigger: CCAAAACCTTGGCGCGTCTGCTGTACATGAAGGAGAAGCCCCTCACCTATGAGCACGGCGTGAAGCTGGCGAAAGCGATTGGAGCGCAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172981.2 |
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| 3UTR CCA 90 bp | CTGGCAGGGCACTGGGACAGGCGTTGGGATGCAGGAATTCCTTTCTaGTCACGCCCTCCTTTTTGGCTAGAGTTGGGTCACAGAGACTGG | + |
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Preference number: 1 (lower is better) Translates to: LAGHWDRRWDAGIPF*SRPPFWLELGHRDW Trigger: CCAGTCTCTGTGACCCAACTCTAGCCAAAAAGGAGGGCGTGACCAGAAAGGAATTCCTGCATCCCAACGCCTGTCCCAGTGCCCTGCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR TCA 90 bp | AATTCCAGGAGTTTGGCTGACTCCTGTTCATTCACTCTGGGACCCTaGGAGATGAGTGGGGACTTGCTGCCTCCCTCCCCACAGTGCTGC | + |
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Preference number: 1 (lower is better) Translates to: NSRSLADSCSFTLGP*EMSGDLLPPSPQCC Trigger: GCAGCACTGTGGGGAGGGAGGCAGCAAGTCCCCACTCATCTCTCAGGGTCCCAGAGTGAATGAACAGGAGTCAGCCAAACTCCTGGAATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR GCA 90 bp | ATGCTGAGCTGGGAAGCTGGCAGGGCACTGGGACAGGCGTTGGGATaGAGGAATTCCTTTCTGGTCACGCCCTCCTTTTTGGCTAGAGTT | + |
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Preference number: 1 (lower is better) Translates to: MLSWEAGRALGQALG*RNSFLVTPSFLARV Trigger: AACTCTAGCCAAAAAGGAGGGCGTGACCAGAAAGGAATTCCTGCATCCCAACGCCTGTCCCAGTGCCCTGCCAGCTTCCCAGCTCAGCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR CCA 90 bp | AGGCGTTGGGATGCAGGAATTCCTTTCTGGTCACGCCCTCCTTTTTaGCTAGAGTTGGGTCACAGAGACTGGCTGCCCTCCATGCCCTTG | + |
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Preference number: 1 (lower is better) Translates to: RRWDAGIPFWSRPPF*LELGHRDWLPSMPL Trigger: CAAGGGCATGGAGGGCAGCCAGTCTCTGTGACCCAACTCTAGCCAAAAAGGAGGGCGTGACCAGAAAGGAATTCCTGCATCCCAACGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR GCA 90 bp | CAGCTGCAGGCAAGCCTGAGGGCAAACAGGCCAACAGGGATAGCCTaGAGAGCCGGAACTTTTGGTATGTTAGTTCATGGTGGTGCCACA | + |
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Preference number: 1 (lower is better) Translates to: QLQASLRANRPTGIA*RAGTFGMLVHGGAT Trigger: TGTGGCACCACCATGAACTAACATACCAAAAGTTCCGGCTCTGCAGGCTATCCCTGTTGGCCTGTTTGCCCTCAGGCTTGCCTGCAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR TCA 90 bp | CAGTGCTTTAGCATATTAGCCTGTCAGCCTGCCAGCCCGGGCCTCTaGATGAGGCAGGAGGAGCCCAAACTTGTCTCTTCCAATTCTGAC | + |
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Preference number: 1 (lower is better) Translates to: QCFSILACQPASPGL*MRQEEPKLVSSNSD Trigger: GTCAGAATTGGAAGAGACAAGTTTGGGCTCCTCCTGCCTCATTCAGAGGCCCGGGCTGGCAGGCTGACAGGCTAATATGCTAAAGCACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR CCA 90 bp | TCACAGCCTCTAATTAAGACACGGAGAGTCCCTGGCTGTTTGCAATaGTCCTGTCAGGTGCAGGATTCCTCTCTGGGAGCGGTTCCTGCT | + |
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Preference number: 1 (lower is better) Translates to: SQPLIKTRRVPGCLQ*SCQVQDSSLGAVPA Trigger: AGCAGGAACCGCTCCCAGAGAGGAATCCTGCACCTGACAGGACCATTGCAAACAGCCAGGGACTCTCCGTGTCTTAATTAGAGGCTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR GCA 90 bp | TATGGCCCTCAAGTCTCCTTCTGCACATGCATCCATTATAGTGACTaGTCTGCTCATGTCGTGATGACAACGGGCAGGCAGAGAGTTGGC | + |
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Preference number: 1 (lower is better) Translates to: YGPQVSFCTCIHYSD*SAHVVMTTGRQRVG Trigger: GCCAACTCTCTGCCTGCCCGTTGTCATCACGACATGAGCAGAGCAGTCACTATAATGGATGCATGTGCAGAAGGAGACTTGAGGGCCATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR GCA 90 bp | AGTAAGACTTGTGCCAACAGGCCCAAAGAACTTGGGGAGACAAGGTaGATCCATCTCTCAAACCAGGGGAGGGAACCACTCTGCTCTACT | + |
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Preference number: 1 (lower is better) Translates to: SKTCANRPKELGETR*IHLSNQGREPLCST Trigger: AGTAGAGCAGAGTGGTTCCCTCCCCTGGTTTGAGAGATGGATGCACCTTGTCTCCCCAAGTTCTTTGGGCCTGTTGGCACAAGTCTTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR TCA 90 bp | CCCGTCATGACTCTCTGTTGGTCCATAACCGTGGGAGAGAAGATATaGAATACCAGATGGATTGTCACTCGGCTTCCAACACCTCACCAG | + |
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Preference number: 1 (lower is better) Translates to: PVMTLCWSITVGEKI*NTRWIVTRLPTPHQ Trigger: CTGGTGAGGTGTTGGAAGCCGAGTGACAATCCATCTGGTATTTCATATCTTCTCTCCCACGGTTATGGACCAACAGAGAGTCATGACGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR GCA 90 bp | GAAGGAACACAGAGAGCAGGCTACTCCAGAAACAGTGGGCTCTTCTaGCAGGAGCCACATACAGTTACACACACTAACATGTACGTTAGT | + |
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Preference number: 1 (lower is better) Translates to: EGTQRAGYSRNSGLF*QEPHTVTHTNMYVS Trigger: ACTAACGTACATGTTAGTGTGTGTAACTGTATGTGGCTCCTGGCAGAAGAGCCCACTGTTTCTGGAGTAGCCTGCTCTCTGTGTTCCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR CCA 90 bp | ATACCAGATGGATTGTCACTCGGCTTCCAACACCTCACCAGCATATaGTCTGAATGTGACTCTGCATTCTCCATACACAGTGTTCATGGT | + |
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Preference number: 1 (lower is better) Translates to: IPDGLSLGFQHLTSI*SECDSAFSIHSVHG Trigger: ACCATGAACACTGTGTATGGAGAATGCAGAGTCACATTCAGACCATATGCTGGTGAGGTGTTGGAAGCCGAGTGACAATCCATCTGGTAT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR TCA 90 bp | CCAGGACTGGGAGATATGCCACAGCGGTACACAGCATACAAAATCTaGTGGGAAGAAATGAAAACAAGCCAACTTGTAACAGGCCAAATC | + |
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Preference number: 1 (lower is better) Translates to: PGLGDMPQRYTAYKI*WEEMKTSQLVTGQI Trigger: GATTTGGCCTGTTACAAGTTGGCTTGTTTTCATTTCTTCCCATCAGATTTTGTATGCTGTGTACCGCTGTGGCATATCTCCCAGTCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR GCA 90 bp | CGATTCAAAATAGAGAAATATGGCCCTCAAGTCTCCTTCTGCACATaGATCCATTATAGTGACTGCTCTGCTCATGTCGTGATGACAACG | + |
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Preference number: 1 (lower is better) Translates to: RFKIEKYGPQVSFCT*IHYSDCSAHVVMTT Trigger: CGTTGTCATCACGACATGAGCAGAGCAGTCACTATAATGGATGCATGTGCAGAAGGAGACTTGAGGGCCATATTTCTCTATTTTGAATCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR TCA 90 bp | ATGATGGCTCTAAGAACATTGGCAGAGATCCACCGTCAGTTGGTGTaGACACAATCCAGCTTGTCTTTCAATTATTTTGATGTGGATTTG | + |
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Preference number: 1 (lower is better) Translates to: MMALRTLAEIHRQLV*TQSSLSFNYFDVDL Trigger: CAAATCCACATCAAAATAATTGAAAGACAAGCTGGATTGTGTTCACACCAACTGACGGTGGATCTCTGCCAATGTTCTTAGAGCCATCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR CCA 90 bp | AGTTGGTGTGAACACAATCCAGCTTGTCTTTCAATTATTTTGATGTaGATTTGTAAGGCTCAAGTGATTGGACATTGGGAAACTGCAATA | + |
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Preference number: 1 (lower is better) Translates to: SWCEHNPACLSIILM*ICKAQVIGHWETAI Trigger: TATTGCAGTTTCCCAATGTCCAATCACTTGAGCCTTACAAATCCACATCAAAATAATTGAAAGACAAGCTGGATTGTGTTCACACCAACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR-3UTR GCA 90 bp | CTGGGAAGCTGGCAGGGCACTGGGACAGGCGTTGGGATGCAGGAATTCCTTTCTGTCACAGAGACTGGCTaGCCTCCATGCCCTTGCATG | + |
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Preference number: 2 (lower is better) Translates to: LGSWQGTGTGVGMQEFLSVTETG*PPCPCM Trigger: CATGCAAGGGCATGGAGGGCAGCCAGTCTCTGTGAC...AGAAAGGAATTCCTGCATCCCAACGCCTGTCCCAGTGCCCTGCCAGCTTCCCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR-3UTR CCA 90 bp | CGGAGAGTCCCTGGCTGTTTGCAATGGTCCTGTCAGGTGCAGGATTCCTCTCTGAAGCTGGCAGGGCACTaGGACAGGCGTTGGGATGCA | + |
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Preference number: 2 (lower is better) Translates to: RRVPGCLQWSCQVQDSSLKLAGH*DRRWDA Trigger: TGCATCCCAACGCCTGTCCCAGTGCCCTGCCAGCTT...CAGAGAGGAATCCTGCACCTGACAGGACCATTGCAAACAGCCAGGGACTCTCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR CAA 90 bp | TACAGGATGCTGAGCTGGGAAGCTGGCAGGGCACTGGGACAGGCGTaGGGATGCAGGAATTCCTTTCTGGTCACGCCCTCCTTTTTGGCT | + |
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Preference number: 2 (lower is better) Translates to: YRMLSWEAGRALGQA*GCRNSFLVTPSFLA Trigger: AGCCAAAAAGGAGGGCGTGACCAGAAAGGAATTCCTGCATCCCAACGCCTGTCCCAGTGCCCTGCCAGCTTCCCAGCTCAGCATCCTGTA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR-3UTR TCA 90 bp | AAGCTCGGAGCGAGGCTAGGAAGTCATCAGATGAAGGCAGGGGCAGTCCCAGAGGCTGACTCTCCGAAGTaGAGAATGGTCAGAGGGGGT | + |
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Preference number: 2 (lower is better) Translates to: KLGARLGSHQMKAGAVPEADSPK*RMVRGG Trigger: ACCCCCTCTGACCATTCTTCACTTCGGAGAGTCAGC...CTCTGGGACTGCCCCTGCCTTCATCTGATGACTTCCTAGCCTCGCTCCGAGCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR CAA 90 bp | CAGGCGTTGGGATGCAGGAATTCCTTTCTGGTCACGCCCTCCTTTTaGGCTAGAGTTGGGTCACAGAGACTGGCTGCCCTCCATGCCCTT | + |
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Preference number: 2 (lower is better) Translates to: QALGCRNSFLVTPSF*ARVGSQRLAALHAL Trigger: AAGGGCATGGAGGGCAGCCAGTCTCTGTGACCCAACTCTAGCCAAAAAGGAGGGCGTGACCAGAAAGGAATTCCTGCATCCCAACGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR CAA 90 bp | GGCCCATCACAGCCTCTAATTAAGACACGGAGAGTCCCTGGCTGTTaGCAATGGTCCTGTCAGGTGCAGGATTCCTCTCTGGGAGCGGTT | + |
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Preference number: 2 (lower is better) Translates to: GPSQPLIKTRRVPGC*QWSCQVQDSSLGAV Trigger: AACCGCTCCCAGAGAGGAATCCTGCACCTGACAGGACCATTGCAAACAGCCAGGGACTCTCCGTGTCTTAATTAGAGGCTGTGATGGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR-3UTR TCA 90 bp | AGAGTGCTTGGTTTTCCCGTCATGACTCTCTGTTGGTCCATAACCGTGGGAGAGTGGCTTACAGGATGCTaGGCTGGGAAGCTGGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: RVLGFPVMTLCWSITVGEWLTGC*AGKLAG Trigger: CCCTGCCAGCTTCCCAGCTCAGCATCCTGTAAGCCA...CTCTCCCACGGTTATGGACCAACAGAGAGTCATGACGGGAAAACCAAGCACTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR-3UTR TCA 90 bp | TGTCAAGGAAACACAGCCTTTATTGTTTACAGTGGTGCCCTTCCCGGGTCCTCGAGCTGCAGGCAAGCCTaGGGGCAAACAGGCCAACAG | + |
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Preference number: 2 (lower is better) Translates to: CQGNTAFIVYSGALPGSSSCRQA*GQTGQQ Trigger: CTGTTGGCCTGTTTGCCCTCAGGCTTGCCTGCAGCT...CGAGGACCCGGGAAGGGCACCACTGTAAACAATAAAGGCTGTGTTTCCTTGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR-3UTR CCA 90 bp | CATGAACTAAGGCCACCAGTGCAGGACAGAGTGCTTGGTTTTCCCGTCATGACTTACAGGATGCTGAGCTaGGAAGCTGGCAGGGCACTG | + |
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Preference number: 2 (lower is better) Translates to: HELRPPVQDRVLGFPVMTYRMLS*EAGRAL Trigger: CAGTGCCCTGCCAGCTTCCCAGCTCAGCATCCTGTA...AGTCATGACGGGAAAACCAAGCACTCTGTCCTGCACTGGTGGCCTTAGTTCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR-3UTR CCA 90 bp | CAGCTGCAGGCAAGCCTGAGGGCAAACAGGCCAACAGGGATAGCCTGCAGAGCCGGTCAAACATTTGCGTaGTGTCCTTATGCATTGTAC | + |
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Preference number: 2 (lower is better) Translates to: QLQASLRANRPTGIACRAGQTFA*CPYALY Trigger: GTACAATGCATAAGGACACCACGCAAATGTTTGACC...GGCTCTGCAGGCTATCCCTGTTGGCCTGTTTGCCCTCAGGCTTGCCTGCAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR-3UTR GCA 90 bp | CCACTCATTTTCCCAGGGGCCACACACATGGCTGGAGAAGACAGCGAGGATGAGCACCCCGTTACCCTCTaGTGTGTGTTACATTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: PLIFPGATHMAGEDSEDEHPVTL*CVLHFH Trigger: ATGGAAATGTAACACACAGCAGAGGGTAACGGGGTG...CTCATCCTCGCTGTCTTCTCCAGCCATGTGTGTGGCCCCTGGGAAAATGAGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR-3UTR TCA 90 bp | CCACTCATTTTCCCAGGGGCCACACACATGGCTGGAGAAGACAGCGAGGATGAGTCCTGCTTGGATCGATaGACTAAATCAAGGAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: PLIFPGATHMAGEDSEDESCLDR*TKSRRK Trigger: CTTCCTCCTTGATTTAGTTCATCGATCCAAGCAGGA...CTCATCCTCGCTGTCTTCTCCAGCCATGTGTGTGGCCCCTGGGAAAATGAGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR-3UTR GCA 90 bp | CCACTCATTTTCCCAGGGGCCACACACATGGCTGGAGAAGACAGCGAGGATGAGGTCTCCTTCTGCACATaGATCCATTATAGTGACTGC | + |
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Preference number: 2 (lower is better) Translates to: PLIFPGATHMAGEDSEDEVSFCT*IHYSDC Trigger: GCAGTCACTATAATGGATGCATGTGCAGAAGGAGAC...CTCATCCTCGCTGTCTTCTCCAGCCATGTGTGTGGCCCCTGGGAAAATGAGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR-3UTR CCA 90 bp | GTGGCCAGAGCATCAACTCAGACCCTCTCTCTGCCACTCACCTCTCTAAACCTCCTCCGAAGTGAAGAATaGTCAGAGGGGGTAATTCCA | + |
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Preference number: 2 (lower is better) Translates to: VARASTQTLSLPLTSLNLLRSEE*SEGVIP Trigger: TGGAATTACCCCCTCTGACCATTCTTCACTTCGGAG...GAGGTTTAGAGAGGTGAGTGGCAGAGAGAGGGTCTGAGTTGATGCTCTGGCCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGCGAGGATGAGGTCTGGGTGCCCAGGTGCTGGCGCTCAAACAGCTGGATTCCAGAGAGTTGGCGTCTaGCAAATACATTTTGAAGTA | + |
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Preference number: 2 (lower is better) Translates to: TARMRSGCPGAGAQTAGFQRVGV*QIHFEV Trigger: TACTTCAAAATGTATTTGCCAGACGCCAACTCTCTG...GAATCCAGCTGTTTGAGCGCCAGCACCTGGGCACCCAGACCTCATCCTCGCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR-3UTR TCA 90 bp | GTGGGCTCTTCTGCCAGGAGCCACATACAGTTACACACACTAACATGTACGTTAGCTGACTCTCCGAAGTaGAGAATGGTCAGAGGGGGT | + |
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Preference number: 2 (lower is better) Translates to: VGSSARSHIQLHTLTCTLADSPK*RMVRGG Trigger: ACCCCCTCTGACCATTCTTCACTTCGGAGAGTCAGC...TAACGTACATGTTAGTGTGTGTAACTGTATGTGGCTCCTGGCAGAAGAGCCCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR-3UTR CCA 90 bp | GCAGGACAGAGTGCTTGGTTTTCCCGTCATGACTCTCTGTTGGTCCATAACCGTTCACGCCCTCCTTTTTaGCTAGAGTTGGGTCACAGA | + |
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Preference number: 2 (lower is better) Translates to: AGQSAWFSRHDSLLVHNRSRPPF*LELGHR Trigger: TCTGTGACCCAACTCTAGCCAAAAAGGAGGGCGTGA...ACGGTTATGGACCAACAGAGAGTCATGACGGGAAAACCAAGCACTCTGTCCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
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| 3UTR-3UTR CCA 90 bp | CGGAGCGAGGCTAGGAAGTCATCAGATGAAGGCAGGGGCAGTCCCAGAGGCAAGACAAAACACCTCATGTaGGGTCATTTAGATGAGTTA | + |
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Preference number: 2 (lower is better) Translates to: RSEARKSSDEGRGSPRGKTKHLM*GHLDEL Trigger: TAACTCATCTAAATGACCCCACATGAGGTGTTTTGT...CTTGCCTCTGGGACTGCCCCTGCCTTCATCTGATGACTTCCTAGCCTCGCTCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR-3UTR TCA 90 bp | CTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTGATTCAGGTGCTCATCTCCCAACGTCTCCCTAGATaGCTTACAGGACTGTGTCAG | + |
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Preference number: 2 (lower is better) Translates to: LALKQLDSTVFVIQVLISQRLPR*LTGLCQ Trigger: CTGACACAGTCCTGTAAGTCATCTAGGGAGACGTTG...GGAGATGAGCACCTGAATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR-3UTR GCA 90 bp | AGAACTTGGGGAGACAAGGTGCATCCATCTCTCAAACCAGGGGAGGGAACCACTGTCTCCTTCTGCACATaGATCCATTATAGTGACTGC | + |
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Preference number: 2 (lower is better) Translates to: RTWGDKVHPSLKPGEGTTVSFCT*IHYSDC Trigger: GCAGTCACTATAATGGATGCATGTGCAGAAGGAGAC...AGTGGTTCCCTCCCCTGGTTTGAGAGATGGATGCACCTTGTCTCCCCAAGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR-3UTR CCA 90 bp | CCACTCATTTTCCCAGGGGCCACACACATGGCTGGAGAAGACAGCGAGGATGAGCAAAATAGAGAAATATaGCCCTCAAGTCTCCTTCTG | + |
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Preference number: 2 (lower is better) Translates to: PLIFPGATHMAGEDSEDEQNREI*PSSLLL Trigger: CAGAAGGAGACTTGAGGGCCATATTTCTCTATTTTG...CTCATCCTCGCTGTCTTCTCCAGCCATGTGTGTGGCCCCTGGGAAAATGAGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR-3UTR GCA 90 bp | AAGCTCGGAGCGAGGCTAGGAAGTCATCAGATGAAGGCAGGGGCAGTCCCAGAGTATGGGCATACATTTTaGAGGGTTAGTTACTTAGAA | + |
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Preference number: 2 (lower is better) Translates to: KLGARLGSHQMKAGAVPEYGHTF*RVSYLE Trigger: TTCTAAGTAACTAACCCTGCAAAATGTATGCCCATA...CTCTGGGACTGCCCCTGCCTTCATCTGATGACTTCCTAGCCTCGCTCCGAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR-3UTR CCA 90 bp | CATCTCCCAGGGGGCATCTCCTCATCTCTAAGAAGCTTAGGGTGCCAACGTCTCTGGTCTAGACACTGCTaGAGCAAAATGATAAATGCT | + |
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Preference number: 2 (lower is better) Translates to: HLPGGISSSLRSLGCQRLWSRHC*SKMINA Trigger: AGCATTTATCATTTTGCTCCAGCAGTGTCTAGACCA...GAGACGTTGGCACCCTAAGCTTCTTAGAGATGAGGAGATGCCCCCTGGGAGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR-3UTR CCA 90 bp | CTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTGATTCAGGTGCTCATCTCCCTCCGAAGTGAAGAATaGTCAGAGGGGGTAATTCCA | + |
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Preference number: 2 (lower is better) Translates to: LALKQLDSTVFVIQVLISLRSEE*SEGVIP Trigger: TGGAATTACCCCCTCTGACCATTCTTCACTTCGGAG...GGAGATGAGCACCTGAATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| 3UTR CAA 90 bp | ACTGTTCCTAGAAGTCTTTGCAAAAGGAGTCCCAGACTGAAGAATTaGTTTGCAGACTCTAGGAAGGAGGCAGAGAACACTGTGGCCAGA | + |
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Preference number: 2 (lower is better) Translates to: TVPRSLCKRSPRLKN*FADSRKEAENTVAR Trigger: TCTGGCCACAGTGTTCTCTGCCTCCTTCCTAGAGTCTGCAAACAAATTCTTCAGTCTGGGACTCCTTTTGCAAAGACTTCTAGGAACAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR-3UTR TCA 90 bp | TCTGGGTGCCCAGGTGCTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTGATGTGGGGTCATTTAGATaGGTTACACTGATAATAAAC | + |
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Preference number: 2 (lower is better) Translates to: SGCPGAGAQTAGFNCVCDVGSFR*VTLIIN Trigger: GTTTATTATCAGTGTAACTCATCTAAATGACCCCAC...ATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAGCACCTGGGCACCCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR-3UTR TCA 90 bp | ACACTTAGGGTGCATTGTTCCCAGGACTGGGAGATATGCCACAGCGGTACACAGCTGGCAAATACATTTTaGAGTACTTCTGTAGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: TLRVHCSQDWEICHSGTQLANTF*STSVAR Trigger: TCTTGCTACAGAAGTACTTCAAAATGTATTTGCCAG...CTGTGTACCGCTGTGGCATATCTCCCAGTCCTGGGAACAATGCACCCTAAGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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| 3UTR-3UTR CCA 90 bp | GCCCAGGTGCTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTGATTCAGGTGACTCCCCAGACTAAGTaGCTATTTATTATAGGAAGA | + |
|
Preference number: 2 (lower is better) Translates to: AQVLALKQLDSTVFVIQVTPQTK*LFIIGR Trigger: TCTTCCTATAATAAATAGCCACTTAGTCTGGGGAGT...CACCTGAATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAGCACCTGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR-3UTR CCA 90 bp | CTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTGATTCAGGTGCTCATCTCCCAGAGAGTTGGCGTCTaGCAAATACATTTTGAAGTA | + |
|
Preference number: 2 (lower is better) Translates to: LALKQLDSTVFVIQVLISQRVGV*QIHFEV Trigger: TACTTCAAAATGTATTTGCCAGACGCCAACTCTCTG...GGAGATGAGCACCTGAATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR-3UTR CCA 90 bp | CAAGAATGGCTATTTTATAAGTCAATGGGAAATATCAAAGGCCAGGAATTGAAGCAGGGGCCACACACATaGCTGGAGAAGACAGCGAGG | + |
|
Preference number: 2 (lower is better) Translates to: QEWLFYKSMGNIKGQELKQGPHT*LEKTAR Trigger: CCTCGCTGTCTTCTCCAGCCATGTGTGTGGCCCCTG...CTTCAATTCCTGGCCTTTGATATTTCCCATTGACTTATAAAATAGCCATTCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR-3UTR CCA 90 bp | CTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTGATTCAGGTGCTCATCTCCACTCCCCAGACTAAGTaGCTATTTATTATAGGAAGA | + |
|
Preference number: 2 (lower is better) Translates to: LALKQLDSTVFVIQVLISTPQTK*LFIIGR Trigger: TCTTCCTATAATAAATAGCCACTTAGTCTGGGGAGT...GGAGATGAGCACCTGAATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR CAA 90 bp | CCAAAGATTGAAAAGGAAAATTATGTCAAGGAAACACAGCCTTTATaGTTTACAGTGGTGCCCTTCCCGGGTCCTCGGAGTCAAATGACT | + |
|
Preference number: 2 (lower is better) Translates to: PKIEKENYVKETQPL*FTVVPFPGPRSQMT Trigger: AGTCATTTGACTCCGAGGACCCGGGAAGGGCACCACTGTAAACAATAAAGGCTGTGTTTCCTTGACATAATTTTCCTTTTCAATCTTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR CAA 90 bp | ACCGTCAGTTGGTGTGAACACAATCCAGCTTGTCTTTCAATTATTTaGATGTGGATTTGTAAGGCTCAAGTGATTGGACATTGGGAAACT | + |
|
Preference number: 2 (lower is better) Translates to: TVSWCEHNPACLSII*MWICKAQVIGHWET Trigger: AGTTTCCCAATGTCCAATCACTTGAGCCTTACAAATCCACATCAAAATAATTGAAAGACAAGCTGGATTGTGTTCACACCAACTGACGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR-3UTR GCA 90 bp | CATACCATACAATTTTCTTCTGTGGTTCTTCTAAGAGCAGAAAAGACTAGAAAGATAACAGTAGGGTTTTaGAAGAGCAGTCCCCCTATC | + |
|
Preference number: 2 (lower is better) Translates to: HTIQFSSVVLLRAEKTRKITVGF*KSSPPI Trigger: GATAGGGGGACTGCTCTTGCAAAACCCTACTGTTAT...CTTTCTAGTCTTTTCTGCTCTTAGAAGAACCACAGAAGAAAATTGTATGGTATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR-3UTR GCA 90 bp | CAAGAATGGCTATTTTATAAGTCAATGGGAAATATCAAAGGCCAGGAATTGAAGCAATTATGCACACACTaGAGAAGGTGCTTCAAGGAT | + |
|
Preference number: 2 (lower is better) Translates to: QEWLFYKSMGNIKGQELKQLCTH*RRCFKD Trigger: ATCCTTGAAGCACCTTCTGCAGTGTGTGCATAATTG...CTTCAATTCCTGGCCTTTGATATTTCCCATTGACTTATAAAATAGCCATTCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR-3UTR CCA 90 bp | CAAGAATGGCTATTTTATAAGTCAATGGGAAATATCAAAGGCCAGGAATTGAAGGAGACTAACTGCTTATaGGCATACATTTTGCAGGGT | + |
|
Preference number: 2 (lower is better) Translates to: QEWLFYKSMGNIKGQELKETNCL*AYILQG Trigger: ACCCTGCAAAATGTATGCCCATAAGCAGTTAGTCTC...CTTCAATTCCTGGCCTTTGATATTTCCCATTGACTTATAAAATAGCCATTCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR-3UTR GCA 90 bp | TGGACAAACTTCTCACGAATAATTCCAAAGCTCCAGATGGATTCTGAAAATTCCTATGGGCATACATTTTaGAGGGTTAGTTACTTAGAA | + |
|
Preference number: 2 (lower is better) Translates to: WTNFSRIIPKLQMDSENSYGHTF*RVSYLE Trigger: TTCTAAGTAACTAACCCTGCAAAATGTATGCCCATA...GGAATTTTCAGAATCCATCTGGAGCTTTGGAATTATTCGTGAGAAGTTTGTCCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR-3UTR GCA 90 bp | CAAGAATGGCTATTTTATAAGTCAATGGGAAATATCAAAGGCCAGGAATTGAAGGAGAAGGAGACTAACTaGTTATGGGCATACATTTTG | + |
|
Preference number: 2 (lower is better) Translates to: QEWLFYKSMGNIKGQELKEKETN*LWAYIL Trigger: CAAAATGTATGCCCATAAGCAGTTAGTCTCCTTCTC...CTTCAATTCCTGGCCTTTGATATTTCCCATTGACTTATAAAATAGCCATTCTTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR TCA 72 bp | GCTGGCTTAGGACTGTGGCAGTGGCTTACAGGATGCTaGGCTGGGAAGCTGGCAGGGCACTGGGACAGGCGT | + |
|
Preference number: 3 (lower is better) Translates to: AGLGLWQWLTGC*AGKLAGHWDRR Trigger: ACGCCTGTCCCAGTGCCCTGCCAGCTTCCCAGCTCAGCATCCTGTAAGCCACTGCCACAGTCCTAAGCCAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR TCA 72 bp | AGGGGCCACACACATGGCTGGAGAAGACAGCGAGGATaGGGTCTGGGTGCCCAGGTGCTGGCGCTCAAACAG | + |
|
Preference number: 3 (lower is better) Translates to: RGHTHGWRRQRG*GLGAQVLALKQ Trigger: CTGTTTGAGCGCCAGCACCTGGGCACCCAGACCTCATCCTCGCTGTCTTCTCCAGCCATGTGTGTGGCCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR CCA 72 bp | CGCCCTCCTTTTTGGCTAGAGTTGGGTCACAGAGACTaGCTGCCCTCCATGCCCTTGCATGGCGGGGAGATG | + |
|
Preference number: 3 (lower is better) Translates to: RPPFWLELGHRD*LPSMPLHGGEM Trigger: CATCTCCCCGCCATGCAAGGGCATGGAGGGCAGCCAGTCTCTGTGACCCAACTCTAGCCAAAAAGGAGGGCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CCA 72 bp | TGTGGCAGTGGCTTACAGGATGCTGAGCTGGGAAGCTaGCAGGGCACTGGGACAGGCGTTGGGATGCAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: CGSGLQDAELGS*QGTGTGVGMQE Trigger: TTCCTGCATCCCAACGCCTGTCCCAGTGCCCTGCCAGCTTCCCAGCTCAGCATCCTGTAAGCCACTGCCACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR GCA 72 bp | GTTGGGGACTGGAGCCAGGCTGGCCGCACTCTTGCCTaGAACGGACAAAGCCTAGACTTTGAGTCTCAGCTC | + |
|
Preference number: 3 (lower is better) Translates to: VGDWSQAGRTLA*NGQSLDFESQL Trigger: GAGCTGAGACTCAAAGTCTAGGCTTTGTCCGTTGCAGGCAAGAGTGCGGCCAGCCTGGCTCCAGTCCCCAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR TCA 72 bp | CAATCGCTTTCGCCAGCTTCACGCCGTGCTCATAGGTaGGGGGCTTCTCCTTCATGTACAGCAGACGCGCCA | + |
|
Preference number: 3 (lower is better) Translates to: QSLSPASRRAHR*GASPSCTADAP Trigger: TGGCGCGTCTGCTGTACATGAAGGAGAAGCCCCTCACCTATGAGCACGGCGTGAAGCTGGCGAAAGCGATTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172981.2 |
||
| 3UTR GCA 72 bp | TGGGAAGCTGGCAGGGCACTGGGACAGGCGTTGGGATaGAGGAATTCCTTTCTGGTCACGCCCTCCTTTTTG | + |
|
Preference number: 3 (lower is better) Translates to: WEAGRALGQALG*RNSFLVTPSFL Trigger: CAAAAAGGAGGGCGTGACCAGAAAGGAATTCCTGCATCCCAACGCCTGTCCCAGTGCCCTGCCAGCTTCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR GCA 72 bp | ACATGGCTGGAGAAGACAGCGAGGATGAGGTCTGGGTaGCCAGGTGCTGGCGCTCAAACAGCTGGATTCAAC | + |
|
Preference number: 3 (lower is better) Translates to: TWLEKTARMRSG*PGAGAQTAGFN Trigger: GTTGAATCCAGCTGTTTGAGCGCCAGCACCTGGGCACCCAGACCTCATCCTCGCTGTCTTCTCCAGCCATGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR CCA 72 bp | CCGAAGATCCACTCATTTTCCCAGGGGCCACACACATaGCTGGAGAAGACAGCGAGGATGAGGTCTGGGTGC | + |
|
Preference number: 3 (lower is better) Translates to: PKIHSFSQGPHT*LEKTARMRSGC Trigger: GCACCCAGACCTCATCCTCGCTGTCTTCTCCAGCCATGTGTGTGGCCCCTGGGAAAATGAGTGGATCTTCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR TCA 72 bp | AGTTTGGCTGACTCCTGTTCATTCACTCTGGGACCCTaGGAGATGAGTGGGGACTTGCTGCCTCCCTCCCCA | + |
|
Preference number: 3 (lower is better) Translates to: SLADSCSFTLGP*EMSGDLLPPSP Trigger: TGGGGAGGGAGGCAGCAAGTCCCCACTCATCTCTCAGGGTCCCAGAGTGAATGAACAGGAGTCAGCCAAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR-3UTR CAA 90 bp | GGTGCTCATCTCCCAGGGGGCATCTCCTCATCTCTAAGAAGCTTAGGGTGCCAACGGGCAGGCAGAGAGTaGGCGTCTGGCAAATACATT | + |
|
Preference number: 3 (lower is better) Translates to: GAHLPGGISSSLRSLGCQRAGRE*ASGKYI Trigger: AATGTATTTGCCAGACGCCAACTCTCTGCCTGCCCG...TTGGCACCCTAAGCTTCTTAGAGATGAGGAGATGCCCCCTGGGAGATGAGCACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR-3UTR CAA 90 bp | GCCCAAAGAACTTGGGGAGACAAGGTGCATCCATCTCTCAAACCAGGGGAGGGACGGGCAGGCAGAGAGTaGGCGTCTGGCAAATACATT | + |
|
Preference number: 3 (lower is better) Translates to: AQRTWGDKVHPSLKPGEGRAGRE*ASGKYI Trigger: AATGTATTTGCCAGACGCCAACTCTCTGCCTGCCCG...TCCCTCCCCTGGTTTGAGAGATGGATGCACCTTGTCTCCCCAAGTTCTTTGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR GCA 72 bp | TGTGCCAACAGGCCCAAAGAACTTGGGGAGACAAGGTaGATCCATCTCTCAAACCAGGGGAGGGAACCACTC | + |
|
Preference number: 3 (lower is better) Translates to: CANRPKELGETR*IHLSNQGREPL Trigger: GAGTGGTTCCCTCCCCTGGTTTGAGAGATGGATGCACCTTGTCTCCCCAAGTTCTTTGGGCCTGTTGGCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR CCA 72 bp | GATGCAGGAATTCCTTTCTGGTCACGCCCTCCTTTTTaGCTAGAGTTGGGTCACAGAGACTGGCTGCCCTCC | + |
|
Preference number: 3 (lower is better) Translates to: DAGIPFWSRPPF*LELGHRDWLPS Trigger: GGAGGGCAGCCAGTCTCTGTGACCCAACTCTAGCCAAAAAGGAGGGCGTGACCAGAAAGGAATTCCTGCATC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CCA 72 bp | CACTGGGACAGGCGTTGGGATGCAGGAATTCCTTTCTaGTCACGCCCTCCTTTTTGGCTAGAGTTGGGTCAC | + |
|
Preference number: 3 (lower is better) Translates to: HWDRRWDAGIPF*SRPPFWLELGH Trigger: GTGACCCAACTCTAGCCAAAAAGGAGGGCGTGACCAGAAAGGAATTCCTGCATCCCAACGCCTGTCCCAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR TCA 72 bp | TGCTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTaGTTCAGGTGCTCATCTCCCAGGGGGCATCTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: CWRSNSWIQLCL*FRCSSPRGHLL Trigger: GAGGAGATGCCCCCTGGGAGATGAGCACCTGAATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR GCA 72 bp | GCAAGCCTGAGGGCAAACAGGCCAACAGGGATAGCCTaGAGAGCCGGAACTTTTGGTATGTTAGTTCATGGT | + |
|
Preference number: 3 (lower is better) Translates to: ASLRANRPTGIA*RAGTFGMLVHG Trigger: ACCATGAACTAACATACCAAAAGTTCCGGCTCTGCAGGCTATCCCTGTTGGCCTGTTTGCCCTCAGGCTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR CCA 72 bp | CTCTGCATTCTCCATACACAGTGTTCATGGTCTGGCTaGCTTAGGACTGTGGCAGTGGCTTACAGGATGCTG | + |
|
Preference number: 3 (lower is better) Translates to: LCILHTQCSWSG*LRTVAVAYRML Trigger: CAGCATCCTGTAAGCCACTGCCACAGTCCTAAGCCAGCCAGACCATGAACACTGTGTATGGAGAATGCAGAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR GCA 72 bp | CAGAGAGCAGGCTACTCCAGAAACAGTGGGCTCTTCTaGCAGGAGCCACATACAGTTACACACACTAACATG | + |
|
Preference number: 3 (lower is better) Translates to: QRAGYSRNSGLF*QEPHTVTHTNM Trigger: CATGTTAGTGTGTGTAACTGTATGTGGCTCCTGGCAGAAGAGCCCACTGTTTCTGGAGTAGCCTGCTCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR CCA 72 bp | ACAGAAGGGGCCGGCGGACAGAAACACTCTCCAAAATaGTTCCTTCTAGCTCTTGTAGAACAAGGACGAAGC | + |
|
Preference number: 3 (lower is better) Translates to: TEGAGGQKHSPK*FLLALVEQGRS Trigger: GCTTCGTCCTTGTTCTACAAGAGCTAGAAGGAACCATTTTGGAGAGTGTTTCTGTCCGCCGGCCCCTTCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR CCA 72 bp | TCCAGGAAAAGTAGCCAACGGATCTTGGGTGTGATTTaGGATGTTCCGTGTGAGAGACACACAGAGCCCAGT | + |
|
Preference number: 3 (lower is better) Translates to: SRKSSQRILGVI*DVPCERHTEPS Trigger: ACTGGGCTCTGTGTGTCTCTCACACGGAACATCCCAAATCACACCCAAGATCCGTTGGCTACTTTTCCTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR TCA 72 bp | ATCGTTCCAGGAAAAGTAGCCAACGGATCTTGGGTGTaGTTTGGGATGTTCCGTGTGAGAGACACACAGAGC | + |
|
Preference number: 3 (lower is better) Translates to: IVPGKVANGSWV*FGMFRVRDTQS Trigger: GCTCTGTGTGTCTCTCACACGGAACATCCCAAATCACACCCAAGATCCGTTGGCTACTTTTCCTGGAACGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR CCA 72 bp | GATCACTGTTTATGGCTGACTCTCCGAAGTGAAGAATaGTCAGAGGGGGTAATTCCAGCTTCGCTCTGTCAG | + |
|
Preference number: 3 (lower is better) Translates to: DHCLWLTLRSEE*SEGVIPASLCQ Trigger: CTGACAGAGCGAAGCTGGAATTACCCCCTCTGACCATTCTTCACTTCGGAGAGTCAGCCATAAACAGTGATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR-3UTR CAA 90 bp | AGAACTTGGGGAGACAAGGTGCATCCATCTCTCAAACCAGGGGAGGGAACCACTTTACTCTTGACTAGTTaGGAGAAGGAGACTAACTGC | + |
|
Preference number: 3 (lower is better) Translates to: RTWGDKVHPSLKPGEGTTLLLTS*EKETNC Trigger: GCAGTTAGTCTCCTTCTCCAAACTAGTCAAGAGTAA...AGTGGTTCCCTCCCCTGGTTTGAGAGATGGATGCACCTTGTCTCCCCAAGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR-3UTR CAA 90 bp | GCCCAAAGAACTTGGGGAGACAAGGTGCATCCATCTCTCAAACCAGGGGAGGGAACTTGGTCTTCTCAATaGGCTTTCATATGCTCAACA | + |
|
Preference number: 3 (lower is better) Translates to: AQRTWGDKVHPSLKPGEGTWSSQ*AFICST Trigger: TGTTGAGCATATGAAAGCCAATTGAGAAGACCAAGT...TCCCTCCCCTGGTTTGAGAGATGGATGCACCTTGTCTCCCCAAGTTCTTTGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR GCA 72 bp | GCTCTTGTAGAACAAGGACGAAGCTCGGAAACACCTTaGAGTTTAAGGCAAGGTGTTTCCTCGGTTAGCTCA | + |
|
Preference number: 3 (lower is better) Translates to: ALVEQGRSSETP*SLRQGVSSVSS Trigger: TGAGCTAACCGAGGAAACACCTTGCCTTAAACTGCAAGGTGTTTCCGAGCTTCGTCCTTGTTCTACAAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR GCA 72 bp | TGCATCCATCTCTCAAACCAGGGGAGGGAACCACTCTaGTCTACTGTTCCTAGAAGTCTTTGCAAAAGGAGT | + |
|
Preference number: 3 (lower is better) Translates to: CIHLSNQGREPL*STVPRSLCKRS Trigger: ACTCCTTTTGCAAAGACTTCTAGGAACAGTAGAGCAGAGTGGTTCCCTCCCCTGGTTTGAGAGATGGATGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR-3UTR CAA 90 bp | CATACCATACAATTTTCTTCTGTGGTTCTTCTAAGAGCAGAAAAGACTAGAAAGCTGCCCTCCATGCCCTaGCATGGCGGGGAGATGGGT | + |
|
Preference number: 3 (lower is better) Translates to: HTIQFSSVVLLRAEKTRKLPSMP*HGGEMG Trigger: ACCCATCTCCCCGCCATGCAAGGGCATGGAGGGCAG...CTTTCTAGTCTTTTCTGCTCTTAGAAGAACCACAGAAGAAAATTGTATGGTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR-3UTR CAA 90 bp | AGAAATTCTAAACAACAGACAAACAACCAAAGCCCCCAAAGACTGAAGGGGTGTGTCACGCCCTCCTTTTaGGCTAGAGTTGGGTCACAG | + |
|
Preference number: 3 (lower is better) Translates to: RNSKQQTNNQSPQRLKGCVTPSF*ARVGSQ Trigger: CTGTGACCCAACTCTAGCCAAAAAGGAGGGCGTGAC...ACACCCCTTCAGTCTTTGGGGGCTTTGGTTGTTTGTCTGTTGTTTAGAATTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR-3UTR CAA 90 bp | CACAGAGAGCAGGCTACTCCAGAAACAGTGGGCTCTTCTGCCAGGAGCCACATATCTGGCAAATACATTTaGAAGTACTTCTGTAGCAAG | + |
|
Preference number: 3 (lower is better) Translates to: HREQATPETVGSSARSHISGKYI*KYFCSK Trigger: CTTGCTACAGAAGTACTTCAAAATGTATTTGCCAGA...TATGTGGCTCCTGGCAGAAGAGCCCACTGTTTCTGGAGTAGCCTGCTCTCTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR-3UTR CAA 90 bp | AGAACTTGGGGAGACAAGGTGCATCCATCTCTCAAACCAGGGGAGGGAACCACTTCTGGCAAATACATTTaGAAGTACTTCTGTAGCAAG | + |
|
Preference number: 3 (lower is better) Translates to: RTWGDKVHPSLKPGEGTTSGKYI*KYFCSK Trigger: CTTGCTACAGAAGTACTTCAAAATGTATTTGCCAGA...AGTGGTTCCCTCCCCTGGTTTGAGAGATGGATGCACCTTGTCTCCCCAAGTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR-3UTR CAA 90 bp | GCTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTGATTCAGGTGCTCATCTCTTACTCTTGACTAGTTaGGAGAAGGAGACTAACTGC | + |
|
Preference number: 3 (lower is better) Translates to: AGAQTAGFNCVCDSGAHLLLLTS*EKETNC Trigger: GCAGTTAGTCTCCTTCTCCAAACTAGTCAAGAGTAA...GAGATGAGCACCTGAATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR TCA 72 bp | AATGTTGGTGTTGTATTCCCAAGTTTGGTGAAGACATaGACTAAGGCCACCAGTGCAGGACAGAGTGCTTGG | + |
|
Preference number: 3 (lower is better) Translates to: NVGVVFPSLVKT*TKATSAGQSAW Trigger: CCAAGCACTCTGTCCTGCACTGGTGGCCTTAGTTCATGTCTTCACCAAACTTGGGAATACAACACCAACATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR TCA 72 bp | ACAGTAGGGTTTTGCAAGAGCAGTCCCCCTATCTTCTaGACCATTTGTGGGATGATCTTTGGCCAAACTTGG | + |
|
Preference number: 3 (lower is better) Translates to: TVGFCKSSPPIF*TICGMIFGQTW Trigger: CCAAGTTTGGCCAAAGATCATCCCACAAATGGTTCAGAAGATAGGGGGACTGCTCTTGCAAAACCCTACTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR TCA 72 bp | CAAGAGAAACAGCAAGCTAATACTTTCCTCTTCCTTTaGCTGGGGTGGGGTGCACTGAAGAAGCACAGTAGT | + |
|
Preference number: 3 (lower is better) Translates to: QEKQQANTFLFL*LGWGALKKHSS Trigger: ACTACTGTGCTTCTTCAGTGCACCCCACCCCAGTCAAAGGAAGAGGAAAGTATTAGCTTGCTGTTTCTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR GCA 72 bp | GAACACCTTTCTGTTAGTTTCTTACAACACTTAGGGTaGATTGTTCCCAGGACTGGGAGATATGCCACAGCG | + |
|
Preference number: 3 (lower is better) Translates to: EHLSVSFLQHLG*IVPRTGRYATA Trigger: CGCTGTGGCATATCTCCCAGTCCTGGGAACAATGCACCCTAAGTGTTGTAAGAAACTAACAGAAAGGTGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR CCA 72 bp | TTGCAAGAGCAGTCCCCCTATCTTCTGAACCATTTGTaGGATGATCTTTGGCCAAACTTGGGAGCTGTAACT | + |
|
Preference number: 3 (lower is better) Translates to: LQEQSPYLLNHL*DDLWPNLGAVT Trigger: AGTTACAGCTCCCAAGTTTGGCCAAAGATCATCCCACAAATGGTTCAGAAGATAGGGGGACTGCTCTTGCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR TCA 72 bp | ACTCTCTGTTGGTCCATAACCGTGGGAGAGAAGATATaGAATACCAGATGGATTGTCACTCGGCTTCCAACA | + |
|
Preference number: 3 (lower is better) Translates to: TLCWSITVGEKI*NTRWIVTRLPT Trigger: TGTTGGAAGCCGAGTGACAATCCATCTGGTATTTCATATCTTCTCTCCCACGGTTATGGACCAACAGAGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR TCA 72 bp | CTAAACAACAGACAAACAACCAAAGCCCCCAAAGACTaGAGGGGTGTCATGAAGGACTTAAGACGACCCATA | + |
|
Preference number: 3 (lower is better) Translates to: LNNRQTTKAPKD*RGVMKDLRRPI Trigger: TATGGGTCGTCTTAAGTCCTTCATGACACCCCTTCAGTCTTTGGGGGCTTTGGTTGTTTGTCTGTTGTTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR TCA 72 bp | GGGCAGGCAGAGAGTTGGCGTCTGGCAAATACATTTTaGAGTACTTCTGTAGCAAGATCACTGTTTATGGCT | + |
|
Preference number: 3 (lower is better) Translates to: GQAESWRLANTF*STSVARSLFMA Trigger: AGCCATAAACAGTGATCTTGCTACAGAAGTACTTCAAAATGTATTTGCCAGACGCCAACTCTCTGCCTGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR GCA 72 bp | AGGGAACCACTCTGCTCTACTGTTCCTAGAAGTCTTTaGAAAAGGAGTCCCAGACTGAAGAATTTGTTTGCA | + |
|
Preference number: 3 (lower is better) Translates to: REPLCSTVPRSL*KRSPRLKNLFA Trigger: TGCAAACAAATTCTTCAGTCTGGGACTCCTTTTGCAAAGACTTCTAGGAACAGTAGAGCAGAGTGGTTCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR GCA 72 bp | CAAATGACTTACTCAGCTAAGTATTTAGGACCCATCTaGAAAAGCTCAGAGACTCCTCAGTTAGGCACACAT | + |
|
Preference number: 3 (lower is better) Translates to: QMTYSAKYLGPI*KSSETPQLGTH Trigger: ATGTGTGCCTAACTGAGGAGTCTCTGAGCTTTTGCAGATGGGTCCTAAATACTTAGCTGAGTAAGTCATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR-3UTR CAA 90 bp | AGTTGGTGTGAACACAATCCAGCTTGTCTTTCAATTATTTTGATGTGGATTTGTCCTTTTTGGCTAGAGTaGGGTCACAGAGACTGGCTG | + |
|
Preference number: 3 (lower is better) Translates to: SWCEHNPACLSIILMWICPFWLE*GHRDWL Trigger: CAGCCAGTCTCTGTGACCCAACTCTAGCCAAAAAGG...ACAAATCCACATCAAAATAATTGAAAGACAAGCTGGATTGTGTTCACACCAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR TCA 72 bp | CTAAGAACATTGGCAGAGATCCACCGTCAGTTGGTGTaGACACAATCCAGCTTGTCTTTCAATTATTTTGAT | + |
|
Preference number: 3 (lower is better) Translates to: LRTLAEIHRQLV*TQSSLSFNYFD Trigger: ATCAAAATAATTGAAAGACAAGCTGGATTGTGTTCACACCAACTGACGGTGGATCTCTGCCAATGTTCTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CCA 72 bp | AAATCAAGGAGGAAGACGATTCAAAATAGAGAAATATaGCCCTCAAGTCTCCTTCTGCACATGCATCCATTA | + |
|
Preference number: 3 (lower is better) Translates to: KSRRKTIQNREI*PSSLLLHMHPL Trigger: TAATGGATGCATGTGCAGAAGGAGACTTGAGGGCCATATTTCTCTATTTTGAATCGTCTTCCTCCTTGATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR TCA 72 bp | TTGACACGCACACATATAAAAAGCACAGCAAGTAAATaGATGTGCTTGCTTGTAATGCTTGCTTGTAGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: LTRTHIKSTASK*MCLLVMLACSV Trigger: CACACTACAAGCAAGCATTACAAGCAAGCACATTCATTTACTTGCTGTGCTTTTTATATGTGTGCGTGTCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR TCA 72 bp | TTTATAAGTCAATGGGAAATATCAAAGGCCAGGAATTaGAGCCATCCGTGCATGATGAAAATCTACTTTATG | + |
|
Preference number: 3 (lower is better) Translates to: FISQWEISKARN*SHPCMMKIYFM Trigger: CATAAAGTAGATTTTCATCATGCACGGATGGCTTCAATTCCTGGCCTTTGATATTTCCCATTGACTTATAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| CDS-3UTR CCA 90 bp | GAAGCTGGCAGGGCACTGGGACAGGCGTTGGGATGCAGGAATTCCTTTCTGGTCGCTTTGAGACCCTTCTaGGTCAGGGCAGAACATTCC | + |
|
Preference number: 4 (lower is better) Translates to: EAGRALGQALGCRNSFLVALRPF*VRAEHS Trigger: GGAATGTTCTGCCCTGACCCAGAAGGGTCTCAAAGC...GACCAGAAAGGAATTCCTGCATCCCAACGCCTGTCCCAGTGCCCTGCCAGCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CAA 72 bp | GGATGCAGGAATTCCTTTCTGGTCACGCCCTCCTTTTaGGCTAGAGTTGGGTCACAGAGACTGGCTGCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: GCRNSFLVTPSF*ARVGSQRLAAL Trigger: GAGGGCAGCCAGTCTCTGTGACCCAACTCTAGCCAAAAAGGAGGGCGTGACCAGAAAGGAATTCCTGCATCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| CDS-3UTR GCA 90 bp | CTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTGATTCAGGTGCTCATCTCCAGTCCAAGCAAGTGCTaGTTGCCTCCCACCGTCACG | + |
|
Preference number: 4 (lower is better) Translates to: LALKQLDSTVFVIQVLISSPSKC*LPPTVT Trigger: CGTGACGGTGGGAGGCAAGCAGCACTTGCTTGGACT...GGAGATGAGCACCTGAATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| CDS-3UTR CCA 90 bp | GCCCAAAGAACTTGGGGAGACAAGGTGCATCCATCTCTCAAACCAGGGGAGGGAAGTGGTCAAACACAGTaGGCACGTATTCCTCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: AQRTWGDKVHPSLKPGEGSGQTQ*ARIPLG Trigger: TCCCAGAGGAATACGTGCCCACTGTGTTTGACCACT...TCCCTCCCCTGGTTTGAGAGATGGATGCACCTTGTCTCCCCAAGTTCTTTGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| CDS-3UTR CCA 90 bp | TCTGGGTCAGGGCAGAACATTCCAAGTAGCACTGCGCTCCAATCGCTTTCGCCAAGTGGTCAAACACAGTaGGCACGTATTCCTCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: SGSGQNIPSSTALQSLSPSGQTQ*ARIPLG Trigger: TCCCAGAGGAATACGTGCCCACTGTGTTTGACCACT...TGGCGAAAGCGATTGGAGCGCAGTGCTACTTGGAATGTTCTGCCCTGACCCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172981.2 |
||
| CDS-3UTR CCA 90 bp | GGTGCTCATCTCCCAGGGGGCATCTCCTCATCTCTAAGAAGCTTAGGGTGCCAAGAAACACATCTGTGTTaGGGTAAGAGAGTGGCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: GAHLPGGISSSLRSLGCQETHLC*GKRVAA Trigger: TGCGGCCACTCTCTTACCCCAACACAGATGTGTTTC...TTGGCACCCTAAGCTTCTTAGAGATGAGGAGATGCCCCCTGGGAGATGAGCACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| CDS-3UTR CCA 90 bp | TCTGGGTCAGGGCAGAACATTCCAAGTAGCACTGCGCTCCAATCGCTTTCGCCAGAAACACATCTGTGTTaGGGTAAGAGAGTGGCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: SGSGQNIPSSTALQSLSPETHLC*GKRVAA Trigger: TGCGGCCACTCTCTTACCCCAACACAGATGTGTTTC...TGGCGAAAGCGATTGGAGCGCAGTGCTACTTGGAATGTTCTGCCCTGACCCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172981.2 |
||
| 3UTR CAA 72 bp | CAGCCTCTAATTAAGACACGGAGAGTCCCTGGCTGTTaGCAATGGTCCTGTCAGGTGCAGGATTCCTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: QPLIKTRRVPGC*QWSCQVQDSSL Trigger: CAGAGAGGAATCCTGCACCTGACAGGACCATTGCAAACAGCCAGGGACTCTCCGTGTCTTAATTAGAGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| CDS-3UTR CCA 90 bp | GCAGGACAGAGTGCTTGGTTTTCCCGTCATGACTCTCTGTTGGTCCATAACCGTGTTGGGGTAAGAGAGTaGCCGCAGCTGGTTGTAATC | + |
|
Preference number: 4 (lower is better) Translates to: AGQSAWFSRHDSLLVHNRVGVRE*PQLVVI Trigger: GATTACAACCAGCTGCGGCCACTCTCTTACCCCAAC...ACGGTTATGGACCAACAGAGAGTCATGACGGGAAAACCAAGCACTCTGTCCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| CDS-3UTR CCA 90 bp | CACTTAGGGTGCATTGTTCCCAGGACTGGGAGATATGCCACAGCGGTACACAGCGTTGTGGTAAGAGGCTaGGTTTACGACAGAGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: HLGCIVPRTGRYATAVHSVVVRG*VYDREA Trigger: TGCTTCTCTGTCGTAAACCCAGCCTCTTACCACAAC...GCTGTGTACCGCTGTGGCATATCTCCCAGTCCTGGGAACAATGCACCCTAAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| CDS-3UTR CCA 90 bp | CTCATAGGTGAGGGGCTTCTCCTTCATGTACAGCAGACGCGCCAAGGTTTTGGGGTTGTGGTAAGAGGCTaGGTTTACGACAGAGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LIGEGLLLHVQQTRQGFGVVVRG*VYDREA Trigger: TGCTTCTCTGTCGTAAACCCAGCCTCTTACCACAAC...CCCAAAACCTTGGCGCGTCTGCTGTACATGAAGGAGAAGCCCCTCACCTATGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000172981.2 |
||
| CDS-3UTR GCA 90 bp | CCAGCATATGGTCTGAATGTGACTCTGCATTCTCCATACACAGTGTTCATGGTCAGTCCAAGCAAGTGCTaGTTGCCTCCCACCGTCACG | + |
|
Preference number: 4 (lower is better) Translates to: PAYGLNVTLHSPYTVFMVSPSKC*LPPTVT Trigger: CGTGACGGTGGGAGGCAAGCAGCACTTGCTTGGACT...GACCATGAACACTGTGTATGGAGAATGCAGAGTCACATTCAGACCATATGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| CDS-3UTR GCA 90 bp | CTTATGCATTGTACCCATAAAACCCCACAGCCAATCCACTTCCAGAGAAGGTGTAGTCCAAGCAAGTGCTaGTTGCCTCCCACCGTCACG | + |
|
Preference number: 4 (lower is better) Translates to: LMHCTHKTPQPIHFQRRCSPSKC*LPPTVT Trigger: CGTGACGGTGGGAGGCAAGCAGCACTTGCTTGGACT...ACACCTTCTCTGGAAGTGGATTGGCTGTGGGGTTTTATGGGTACAATGCATAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| CDS-3UTR GCA 90 bp | GCTGGCGCTCAAACAGCTGGATTCAACTGTGTTTGTGATTCAGGTGCTCATCTCTATAGTCCAAGCAAGTaGTGCTTGCCTCCCACCGTC | + |
|
Preference number: 4 (lower is better) Translates to: AGAQTAGFNCVCDSGAHLYSPSK*CLPPTV Trigger: GACGGTGGGAGGCAAGCAGCACTTGCTTGGACTATA...GAGATGAGCACCTGAATCACAAACACAGTTGAATCCAGCTGTTTGAGCGCCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| CDS-3UTR CCA 90 bp | AGAGTGCTTGGTTTTCCCGTCATGACTCTCTGTTGGTCCATAACCGTGGGAGAGGAAACACATCTGTGTTaGGGTAAGAGAGTGGCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: RVLGFPVMTLCWSITVGEETHLC*GKRVAA Trigger: TGCGGCCACTCTCTTACCCCAACACAGATGTGTTTC...CTCTCCCACGGTTATGGACCAACAGAGAGTCATGACGGGAAAACCAAGCACTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| CDS-3UTR GCA 90 bp | GCATTCTCCATACACAGTGTTCATGGTCTGGCTGGCTTAGGACTGTGGCAGTGGGGCTTCATCAAAAACTaGTTTGAGACCCTTCTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: AFSIHSVHGLAGLGLWQWGFIKN*FETLLG Trigger: ACCCAGAAGGGTCTCAAAGCAGTTTTTGATGAAGCC...CCACTGCCACAGTCCTAAGCCAGCCAGACCATGAACACTGTGTATGGAGAATGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| CDS-3UTR CCA 90 bp | GGCCCTCAAGTCTCCTTCTGCACATGCATCCATTATAGTGACTGCTCTGCTCATAGTGGTCAAACACAGTaGGCACGTATTCCTCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: GPQVSFCTCIHYSDCSAHSGQTQ*ARIPLG Trigger: TCCCAGAGGAATACGTGCCCACTGTGTTTGACCACT...ATGAGCAGAGCAGTCACTATAATGGATGCATGTGCAGAAGGAGACTTGAGGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| CDS-3UTR TCA 90 bp | AGAGTGCTTGGTTTTCCCGTCATGACTCTCTGTTGGTCCATAACCGTGGGAGAGTGGGGTGGAAAATGGTaGGGATGGCTTCATCAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: RVLGFPVMTLCWSITVGEWGGKW*GWLHQK Trigger: TTTTTGATGAAGCCATCCTCACCATTTTCCACCCCA...CTCTCCCACGGTTATGGACCAACAGAGAGTCATGACGGGAAAACCAAGCACTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| CDS-3UTR CCA 90 bp | CACCCCGTTACCCTCTGCTGTGTGTTACATTTCCATATGCTGTTCGTAACACTCGAAACACATCTGTGTTaGGGTAAGAGAGTGGCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: HPVTLCCVLHFHMLFVTLETHLC*GKRVAA Trigger: TGCGGCCACTCTCTTACCCCAACACAGATGTGTTTC...GAGTGTTACGAACAGCATATGGAAATGTAACACACAGCAGAGGGTAACGGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| CDS-3UTR CCA 90 bp | CCAGCATATGGTCTGAATGTGACTCTGCATTCTCCATACACAGTGTTCATGGTCAGTGGTCAAACACAGTaGGCACGTATTCCTCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: PAYGLNVTLHSPYTVFMVSGQTQ*ARIPLG Trigger: TCCCAGAGGAATACGTGCCCACTGTGTTTGACCACT...GACCATGAACACTGTGTATGGAGAATGCAGAGTCACATTCAGACCATATGCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CAA 72 bp | GTTTTGCAAGAGCAGTCCCCCTATCTTCTGAACCATTaGTGGGATGATCTTTGGCCAAACTTGGGAGCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: VLQEQSPYLLNH*WDDLWPNLGAV Trigger: TACAGCTCCCAAGTTTGGCCAAAGATCATCCCACAAATGGTTCAGAAGATAGGGGGACTGCTCTTGCAAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CAA 72 bp | CGGGCAGGCAGAGAGTTGGCGTCTGGCAAATACATTTaGAAGTACTTCTGTAGCAAGATCACTGTTTATGGC | + |
|
Preference number: 4 (lower is better) Translates to: RAGRELASGKYI*KYFCSKITVYG Trigger: GCCATAAACAGTGATCTTGCTACAGAAGTACTTCAAAATGTATTTGCCAGACGCCAACTCTCTGCCTGCCCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR CAA 72 bp | GAAAAGGAAAATTATGTCAAGGAAACACAGCCTTTATaGTTTACAGTGGTGCCCTTCCCGGGTCCTCGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: EKENYVKETQPL*FTVVPFPGPRS Trigger: ACTCCGAGGACCCGGGAAGGGCACCACTGTAAACAATAAAGGCTGTGTTTCCTTGACATAATTTTCCTTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| CDS-3UTR CCA 90 bp | TTCAGAAATTCTAAACAACAGACAAACAACCAAAGCCCCCAAAGACTGAAGGGGGTTGTGGTAAGAGGCTaGGTTTACGACAGAGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FRNSKQQTNNQSPQRLKGVVVRG*VYDREA Trigger: TGCTTCTCTGTCGTAAACCCAGCCTCTTACCACAAC...CCCCTTCAGTCTTTGGGGGCTTTGGTTGTTTGTCTGTTGTTTAGAATTTCTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CAA 72 bp | TACAGGACTGTGTCAGAAGTAGGAAGGGTCAAACATTaGCGTGGTGTCCTTATGCATTGTACCCATAAAACC | + |
|
Preference number: 4 (lower is better) Translates to: YRTVSEVGRVKH*RGVLMHCTHKT Trigger: GGTTTTATGGGTACAATGCATAAGGACACCACGCAAATGTTTGACCCTTCCTACTTCTGACACAGTCCTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| 3UTR CAA 72 bp | AGAAGTCTTTGCAAAAGGAGTCCCAGACTGAAGAATTaGTTTGCAGACTCTAGGAAGGAGGCAGAGAACACT | + |
|
Preference number: 4 (lower is better) Translates to: RSLCKRSPRLKN*FADSRKEAENT Trigger: AGTGTTCTCTGCCTCCTTCCTAGAGTCTGCAAACAAATTCTTCAGTCTGGGACTCCTTTTGCAAAGACTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR CAA 72 bp | GGAGAAAGCCTTAGAAAGTGCGGTAGGCTATTGCCTTaGGACAAACTTCTCACGAATAATTCCAAAGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: GESLRKCGRLLP*DKLLTNNSKAP Trigger: TGGAGCTTTGGAATTATTCGTGAGAAGTTTGTCCAAAGGCAATAGCCTACCGCACTTTCTAAGGCTTTCTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| 3UTR CAA 72 bp | TTCCCTAACAATGACATGAGATGTCACCTGCTGCCTTaGGAAGTTGACACGCACACATATAAAAAGCACAGC | + |
|
Preference number: 4 (lower is better) Translates to: FPNNDMRCHLLP*EVDTHTYKKHS Trigger: GCTGTGCTTTTTATATGTGTGCGTGTCAACTTCCAAAGGCAGCAGGTGACATCTCATGTCATTGTTAGGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| CDS-3UTR CCA 90 bp | CGTAACACTCCCCAGACTAAGTGGCTATTTATTATAGGAAGAGAAGGATTAGACGTTGTGGTAAGAGGCTaGGTTTACGACAGAGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RNTPQTKWLFIIGREGLDVVVRG*VYDREA Trigger: TGCTTCTCTGTCGTAAACCCAGCCTCTTACCACAAC...GTCTAATCCTTCTCTTCCTATAATAAATAGCCACTTAGTCTGGGGAGTGTTACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| CDS-3UTR GCA 90 bp | AGTTGGTGTGAACACAATCCAGCTTGTCTTTCAATTATTTTGATGTGGATTTGTTATAGTCCAAGCAAGTaGTGCTTGCCTCCCACCGTC | + |
|
Preference number: 4 (lower is better) Translates to: SWCEHNPACLSIILMWICYSPSK*CLPPTV Trigger: GACGGTGGGAGGCAAGCAGCACTTGCTTGGACTATA...ACAAATCCACATCAAAATAATTGAAAGACAAGCTGGATTGTGTTCACACCAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CAA 72 bp | CTTCTGAACCATTTGTGGGATGATCTTTGGCCAAACTaGGGAGCTGTAACTCACAGGATGTTTTCTTTTAAA | + |
|
Preference number: 4 (lower is better) Translates to: LLNHLWDDLWPN*GAVTHRMFSFK Trigger: TTTAAAAGAAAACATCCTGTGAGTTACAGCTCCCAAGTTTGGCCAAAGATCATCCCACAAATGGTTCAGAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CAA 72 bp | TGGTGTGAACACAATCCAGCTTGTCTTTCAATTATTTaGATGTGGATTTGTAAGGCTCAAGTGATTGGACAT | + |
|
Preference number: 4 (lower is better) Translates to: WCEHNPACLSII*MWICKAQVIGH Trigger: ATGTCCAATCACTTGAGCCTTACAAATCCACATCAAAATAATTGAAAGACAAGCTGGATTGTGTTCACACCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| 3UTR CAA 72 bp | TTTTATAAGTCAATGGGAAATATCAAAGGCCAGGAATaGAAGCCATCCGTGCATGATGAAAATCTACTTTAT | + |
|
Preference number: 4 (lower is better) Translates to: FYKSMGNIKGQE*KPSVHDENLLY Trigger: ATAAAGTAGATTTTCATCATGCACGGATGGCTTCAATTCCTGGCCTTTGATATTTCCCATTGACTTATAAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
||
| CDS-3UTR CAA 90 bp | CTGGGAAGCTGGCAGGGCACTGGGACAGGCGTTGGGATGCAGGAATTCCTTTCTTTCTCCTCATGTCCATaGCAGCCGCAGCTGCTGTCG | + |
|
Preference number: 5 (lower is better) Translates to: LGSWQGTGTGVGMQEFLSFSSCP*QPQLLS Trigger: CGACAGCAGCTGCGGCTGCAATGGACATGAGGAGAA...AGAAAGGAATTCCTGCATCCCAACGCCTGTCCCAGTGCCCTGCCAGCTTCCCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| CDS-3UTR CAA 90 bp | AAGCTCGGAGCGAGGCTAGGAAGTCATCAGATGAAGGCAGGGGCAGTCCCAGAGTTCTCCTCATGTCCATaGCAGCCGCAGCTGCTGTCG | + |
|
Preference number: 5 (lower is better) Translates to: KLGARLGSHQMKAGAVPEFSSCP*QPQLLS Trigger: CGACAGCAGCTGCGGCTGCAATGGACATGAGGAGAA...CTCTGGGACTGCCCCTGCCTTCATCTGATGACTTCCTAGCCTCGCTCCGAGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| CDS-3UTR CAA 90 bp | GAGTTGGGTCACAGAGACTGGCTGCCCTCCATGCCCTTGCATGGCGGGGAGATGTCATCAAAAACTGCTTaGAGACCCTTCTGGGTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: ELGHRDWLPSMPLHGGEMSSKTA*RPFWVR Trigger: CCTGACCCAGAAGGGTCTCAAAGCAGTTTTTGATGA...CATCTCCCCGCCATGCAAGGGCATGGAGGGCAGCCAGTCTCTGTGACCCAACTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055390.6 |
||
| CDS TCA 90 bp | TCCAATTCTCTACCGCTTTCGCCAGCTTCACGCCGTGCTCATAGGTaGGGGGCTTCTCCTTCATGTACAGCAGACGCGCCAAGGTTTTGG | + |
|
Preference number: 5 (lower is better) Translates to: SNSLPLSPASRRAHR*GASPSCTADAPRFW Trigger: CCAAAACCTTGGCGCGTCTGCTGTACATGAAGGAGAAGCCCCTCACCTATGAGCACGGCGTGAAGCTGGCGAAAGCGGTAGAGAATTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118602.8 |
||
| CDS-3UTR CAA 90 bp | GGCCCTCAAGTCTCCTTCTGCACATGCATCCATTATAGTGACTGCTCTGCTCATTTCTCCTCATGTCCATaGCAGCCGCAGCTGCTGTCG | + |
|
Preference number: 5 (lower is better) Translates to: GPQVSFCTCIHYSDCSAHFSSCP*QPQLLS Trigger: CGACAGCAGCTGCGGCTGCAATGGACATGAGGAGAA...ATGAGCAGAGCAGTCACTATAATGGATGCATGTGCAGAAGGAGACTTGAGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118602.8 ENSMUST00000118966.8 |
||
| CDS CCA 90 bp | GACAGAGAAGCAGATGAGAAACACATCTGTGTTGGGGTAAGAGAGTaGCCGCAGCTGGTTGTAATCCTCCTGCGTAGTGGTCAAACACAG | + |
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Preference number: 5 (lower is better) Translates to: DREADEKHICVGVRE*PQLVVILLRSGQTQ Trigger: CTGTGTTTGACCACTACGCAGGAGGATTACAACCAGCTGCGGCCACTCTCTTACCCCAACACAGATGTGTTTCTCATCTGCTTCTCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172981.2 |
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| CDS TCA 72 bp | CTACCGCTTTCGCCAGCTTCACGCCGTGCTCATAGGTaGGGGGCTTCTCCTTCATGTACAGCAGACGCGCCA | + |
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Preference number: 6 (lower is better) Translates to: LPLSPASRRAHR*GASPSCTADAP Trigger: TGGCGCGTCTGCTGTACATGAAGGAGAAGCCCCTCACCTATGAGCACGGCGTGAAGCTGGCGAAAGCGGTAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118602.8 |
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| CDS GCA 72 bp | CCACGCACTTCAGGATCCTGTTCTCCTCATGTCCATTaGAGCCGCAGCTGCTGTCGGTCCTCTCTCTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PRTSGSCSPHVH*SRSCCRSSLCS Trigger: GCTGCAGAGAGAGGACCGACAGCAGCTGCGGCTGCAATGGACATGAGGAGAACAGGATCCTGAAGTGCGTGG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000055390.6 ENSMUST00000118602.8 ENSMUST00000118966.8 |
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| CDS TCA 72 bp | ATACCGCTTTCGCCAGCTTCACGCCGTGCTCATAGGTaGGGGGCTTCTCCTTCATGTACAGCAGACGCGCCA | + |
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Preference number: 6 (lower is better) Translates to: IPLSPASRRAHR*GASPSCTADAP Trigger: TGGCGCGTCTGCTGTACATGAAGGAGAAGCCCCTCACCTATGAGCACGGCGTGAAGCTGGCGAAAGCGGTAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118966.8 |
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