Pregenerated sensors for RHOH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029204Ensembl transcript IDs: ENSMUST00000031106.8, ENSMUST00000201533.2
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGTCTATCAGCAGCCTCGATGGCCTCCCCTCCTGTCTCCAGCATaGAACTTCCTCTTCCTCCCTGGGGCCTTCCCACGGTTAGATGCT | + |
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Preference number: 1 (lower is better) Translates to: QVYQQPRWPPLLSPA*NFLFLPGAFPRLDA Trigger: AGCATCTAACCGTGGGAAGGCCCCAGGGAGGAAGAGGAAGTTTCATGCTGGAGACAGGAGGGGAGGCCATCGAGGCTGCTGATAGACCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CCA 90 bp | ATGAGGCAGCATAGCCTCAGGGACACAGAGAAGAAAGGCCCTGCCTaGCTCAGTTTCCACCAGGTGCACATGAAGGAGGCTTCACACTTG | + |
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Preference number: 1 (lower is better) Translates to: MRQHSLRDTEKKGPA*LSFHQVHMKEASHL Trigger: CAAGTGTGAAGCCTCCTTCATGTGCACCTGGTGGAAACTGAGCCAGGCAGGGCCTTTCTTCTCTGTGTCCCTGAGGCTATGCTGCCTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR TCA 90 bp | GTGCTTCTTCTACCCAGACCAAGACCCAGGTTCCAGGCTTGTGACTaGGCTTGGGAGAGAGACAGACAGAGGAGAAAACAGCATGGAGGG | + |
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Preference number: 1 (lower is better) Translates to: VLLLPRPRPRFQACD*AWERDRQRRKQHGG Trigger: CCCTCCATGCTGTTTTCTCCTCTGTCTGTCTCTCTCCCAAGCTCAGTCACAAGCCTGGAACCTGGGTCTTGGTCTGGGTAGAAGAAGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR TCA 90 bp | GAGGGAATGTGGGTCCCTTCCCCCTCAAACTGCTCCTCTGAGGCCTaGTCAACTGTGATAGGATTAAGAGATAACGTGGTCAGAAAGGCG | + |
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Preference number: 1 (lower is better) Translates to: EGMWVPSPSNCSSEA*STVIGLRDNVVRKA Trigger: CGCCTTTCTGACCACGTTATCTCTTAATCCTATCACAGTTGATCAGGCCTCAGAGGAGCAGTTTGAGGGGGAAGGGACCCACATTCCCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR TCA 90 bp | CCTCTTTTCCCGAGACCTGTAACCAATCAGGAAGTACATGTCAGATaGCACAGGCAAGGAGAAGGGGTCCCTCAACAGCATCCATGTGAC | + |
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Preference number: 1 (lower is better) Translates to: PLFPRPVTNQEVHVR*HRQGEGVPQQHPCD Trigger: GTCACATGGATGCTGTTGAGGGACCCCTTCTCCTTGCCTGTGTCATCTGACATGTACTTCCTGATTGGTTACAGGTCTCGGGAAAAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR GCA 90 bp | AGGCTCCTCACTCTTCATGATGACAGCCATACAACCCCTCTACAGTaGTGGGCTCCAAGAAAGGCGCTACAAGTGTTCCCAGTTATCAGA | + |
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Preference number: 1 (lower is better) Translates to: RLLTLHDDSHTTPLQ*WAPRKALQVFPVIR Trigger: TCTGATAACTGGGAACACTTGTAGCGCCTTTCTTGGAGCCCAGCACTGTAGAGGGGTTGTATGGCTGTCATCATGAAGAGTGAGGAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR GCA 90 bp | CCTGCAGCTATGGGATATCAGATGTGGCAAAGCCATGCAGGTAACTaGTCAGGGAGGAAGTGGGCCATGATGGTTTTGAGTAGAGCTTTG | + |
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Preference number: 1 (lower is better) Translates to: PAAMGYQMWQSHAGN*SGRKWAMMVLSRAL Trigger: CAAAGCTCTACTCAAAACCATCATGGCCCACTTCCTCCCTGAGCAGTTACCTGCATGGCTTTGCCACATCTGATATCCCATAGCTGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CCA 90 bp | TATCAGATGTGGCAAAGCCATGCAGGTAACTGCTCAGGGAGGAAGTaGGCCATGATGGTTTTGAGTAGAGCTTTGGAGCCACACAGACCT | + |
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Preference number: 1 (lower is better) Translates to: YQMWQSHAGNCSGRK*AMMVLSRALEPHRP Trigger: AGGTCTGTGTGGCTCCAAAGCTCTACTCAAAACCATCATGGCCCACTTCCTCCCTGAGCAGTTACCTGCATGGCTTTGCCACATCTGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CCA 90 bp | CTCCTCACTCTTCATGATGACAGCCATACAACCCCTCTACAGTGCTaGGCTCCAAGAAAGGCGCTACAAGTGTTCCCAGTTATCAGATTG | + |
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Preference number: 1 (lower is better) Translates to: LLTLHDDSHTTPLQC*APRKALQVFPVIRL Trigger: CAATCTGATAACTGGGAACACTTGTAGCGCCTTTCTTGGAGCCCAGCACTGTAGAGGGGTTGTATGGCTGTCATCATGAAGAGTGAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CCA 90 bp | TTAAATACAAGCCCTTTGACTAGTAGGGGGAGAGGCCTGCAGCTATaGGATATCAGATGTGGCAAAGCCATGCAGGTAACTGCTCAGGGA | + |
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Preference number: 1 (lower is better) Translates to: LNTSPLTSRGRGLQL*DIRCGKAMQVTAQG Trigger: TCCCTGAGCAGTTACCTGCATGGCTTTGCCACATCTGATATCCCATAGCTGCAGGCCTCTCCCCCTACTAGTCAAAGGGCTTGTATTTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR TCA 90 bp | AAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATaGGTCTCTGAGGTACATTCATACATTCATGAATGTTGGGCACAG | + |
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Preference number: 1 (lower is better) Translates to: KTEHQSSWLALSPLL*VSEVHSYIHECWAQ Trigger: CTGTGCCCAACATTCATGAATGTATGAATGTACCTCAGAGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR CCA 90 bp | TCCAACCAAATTAAATTCAGGAGTAACAATAACGCCACAGACATATaGTTGAACCCCACAAGGTTATTTTCTCCTCATACAGCAGTTTGC | + |
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Preference number: 1 (lower is better) Translates to: SNQIKFRSNNNATDI*LNPTRLFSPHTAVC Trigger: GCAAACTGCTGTATGAGGAGAAAATAACCTTGTGGGGTTCAACCATATGTCTGTGGCGTTATTGTTACTCCTGAATTTAATTTGGTTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR TCA 90 bp | ACCAAATTAAATTCAGGAGTAACAATAACGCCACAGACATATGGTTaGACCCCACAAGGTTATTTTCTCCTCATACAGCAGTTTGCCTTT | + |
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Preference number: 1 (lower is better) Translates to: TKLNSGVTITPQTYG*TPQGYFLLIQQFAF Trigger: AAAGGCAAACTGCTGTATGAGGAGAAAATAACCTTGTGGGGTTCAACCATATGTCTGTGGCGTTATTGTTACTCCTGAATTTAATTTGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR-3UTR CCA 90 bp | GCTCAGTTTCCACCAGGTGCACATGAAGGAGGCTTCACACTTGAATTTCTGCCCAAAGGTGATCGAAGCTaGGCGTGGTGGCACACGCCT | + |
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Preference number: 2 (lower is better) Translates to: AQFPPGAHEGGFTLEFLPKGDRS*AWWHTP Trigger: AGGCGTGTGCCACCACGCCCAGCTTCGATCACCTTT...GGGCAGAAATTCAAGTGTGAAGCCTCCTTCATGTGCACCTGGTGGAAACTGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR TCA 90 bp | CGTGGTCAGAAAGGCGGGACCTTCACAGATGGCACGAAGGCTCTTATGAGAATAGGATGCCCAGTGCCGTaGACAGAAGACATGAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: RGQKGGTFTDGTKALMRIGCPVP*TEDMSS Trigger: AGAGCTCATGTCTTCTGTTCACGGCACTGGGCATCC...TATTCTCATAAGAGCCTTCGTGCCATCTGTGAAGGTCCCGCCTTTCTGACCACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR TCA 90 bp | CGTGGTCAGAAAGGCGGGACCTTCACAGATGGCACGAAGGCTCTTATGAGAATACGTGAACAGAAGACATaGGCTCTCAAGGCAAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: RGQKGGTFTDGTKALMRIREQKT*ALKARD Trigger: GTCCCTTGCCTTGAGAGCTCATGTCTTCTGTTCACG...TATTCTCATAAGAGCCTTCGTGCCATCTGTGAAGGTCCCGCCTTTCTGACCACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR CCA 90 bp | AAGTACATGTCAGATGACACAGGCAAGGAGAAGGGGTCCCTCAACAGCATCCATGAGCATCAGTCCTCTTaGCTTGCCCTTTCCCCTCTC | + |
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Preference number: 2 (lower is better) Translates to: KYMSDDTGKEKGSLNSIHEHQSS*LALSPL Trigger: GAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTC...ATGGATGCTGTTGAGGGACCCCTTCTCCTTGCCTGTGTCATCTGACATGTACTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR CCA 90 bp | GCTCAGTTTCCACCAGGTGCACATGAAGGAGGCTTCACACTTGAATTTCTGCCCCCCAAGGAATCTCTCTaGTTGTGCTGGGCACAGAGT | + |
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Preference number: 2 (lower is better) Translates to: AQFPPGAHEGGFTLEFLPPKESL*LCWAQS Trigger: ACTCTGTGCCCAGCACAACCAGAGAGATTCCTTGGG...GGGCAGAAATTCAAGTGTGAAGCCTCCTTCATGTGCACCTGGTGGAAACTGAGC 52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CAA 90 bp | AACTGCTCAGGGAGGAAGTGGGCCATGATGGTTTTGAGTAGAGCTTaGGAGCCACACAGACCTGCTCCAGACTTAGGAGTTCTGATACTC | + |
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Preference number: 2 (lower is better) Translates to: NCSGRKWAMMVLSRA*EPHRPAPDLGVLIL Trigger: GAGTATCAGAACTCCTAAGTCTGGAGCAGGTCTGTGTGGCTCCAAAGCTCTACTCAAAACCATCATGGCCCACTTCCTCCCTGAGCAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR GCA 90 bp | TTCCCAAGGAATCTCTCTGGTTGTGCTGGGCACAGAGTTCTTCTGCAGAGTAGATCAGTCCTCTTGGCTTaGCCTTTCCCCTCTCCTATG | + |
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Preference number: 2 (lower is better) Translates to: FPRNLSGCAGHRVLLQSRSVLLA*PFPSPM Trigger: CATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGA...TCTACTCTGCAGAAGAACTCTGTGCCCAGCACAACCAGAGAGATTCCTTGGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR-3UTR TCA 90 bp | GAAGACATAGTCCCTGTCTCCTCCTCTGTCTGCTCATTCCAACCTTCAGGATGCCTCTGTCTTAATGAGTaGGAAAGGAACACTTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: EDIVPVSSSVCSFQPSGCLCLNE*ERNTWC Trigger: ACACCAAGTGTTCCTTTCTCACTCATTAAGACAGAG...GCATCCTGAAGGTTGGAATGAGCAGACAGAGGAGGAGACAGGGACTATGTCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR TCA 90 bp | CGCCACAGACATATGGTTGAACCCCACAAGGTTATTTTCTCCTCATACAGCAGTCTTTCCCCTCTCCTATaGGTCTCTGAGGTACATTCA | + |
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Preference number: 2 (lower is better) Translates to: RHRHMVEPHKVIFSSYSSLSPLL*VSEVHS Trigger: TGAATGTACCTCAGAGACTCATAGGAGAGGGGAAAG...ACTGCTGTATGAGGAGAAAATAACCTTGTGGGGTTCAACCATATGTCTGTGGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR-3UTR TCA 90 bp | GCTCAGTTTCCACCAGGTGCACATGAAGGAGGCTTCACACTTGAATTTCTGCCCCGACTCTTTATTATCTaGGTAGGGAGACTTACTCAT | + |
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Preference number: 2 (lower is better) Translates to: AQFPPGAHEGGFTLEFLPRLFII*VGRLTH Trigger: ATGAGTAAGTCTCCCTACTCAGATAATAAAGAGTCG...GGGCAGAAATTCAAGTGTGAAGCCTCCTTCATGTGCACCTGGTGGAAACTGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR GCA 90 bp | CGCCACAGACATATGGTTGAACCCCACAAGGTTATTTTCTCCTCATACAGCAGTGAATCTCTCTGGTTGTaGTGGGCACAGAGTTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: RHRHMVEPHKVIFSSYSSESLWL*WAQSSS Trigger: AGAAGAACTCTGTGCCCAGCACAACCAGAGAGATTC...ACTGCTGTATGAGGAGAAAATAACCTTGTGGGGTTCAACCATATGTCTGTGGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR CAA 90 bp | AAAGCTTGTTCAGATGTTTCAAGACAGAGCATCAGTCCTCTTGGCTaGCCCTTTCCCCTCTCCTATGAGTCTCTGAGGTACATTCATACA | + |
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Preference number: 2 (lower is better) Translates to: KACSDVSRQSISPLG*PFPLSYESLRYIHT Trigger: TGTATGAATGTACCTCAGAGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGAAACATCTGAACAAGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR-3UTR TCA 90 bp | CGTGGTCAGAAAGGCGGGACCTTCACAGATGGCACGAAGGCTCTTATGAGAATACAGGGAAATGGAAGATaGATTACAGAGATCAGTTTA | + |
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Preference number: 2 (lower is better) Translates to: RGQKGGTFTDGTKALMRIQGNGR*ITEISL Trigger: TAAACTGATCTCTGTAATTCATCTTCCATTTCCCTG...TATTCTCATAAGAGCCTTCGTGCCATCTGTGAAGGTCCCGCCTTTCTGACCACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR TCA 90 bp | GCTCAGTTTCCACCAGGTGCACATGAAGGAGGCTTCACACTTGAATTTCTGCCCCTTAAAATTAATAAATaGTGGGGTTGTGCCAGCCAA | + |
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Preference number: 2 (lower is better) Translates to: AQFPPGAHEGGFTLEFLPLKINK*WGCASQ Trigger: TTGGCTGGCACAACCCCATCATTTATTAATTTTAAG...GGGCAGAAATTCAAGTGTGAAGCCTCCTTCATGTGCACCTGGTGGAAACTGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CAA 90 bp | TGCTGGGCTCCAAGAAAGGCGCTACAAGTGTTCCCAGTTATCAGATaGGAACTACAAATGATACATCAGGGTGTAGAAAAGGTGATCGAA | + |
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Preference number: 2 (lower is better) Translates to: CWAPRKALQVFPVIR*ELQMIHQGVEKVIE Trigger: TTCGATCACCTTTTCTACACCCTGATGTATCATTTGTAGTTCCAATCTGATAACTGGGAACACTTGTAGCGCCTTTCTTGGAGCCCAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR CCA 90 bp | GAGAGTCAGCCAGAGAATCCGTGTGACAAGCTGACTTGCTTATGTCAGTATAATAACGCCACAGACATATaGTTGAACCCCACAAGGTTA | + |
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Preference number: 2 (lower is better) Translates to: ESQPENPCDKLTCLCQYNNATDI*LNPTRL Trigger: TAACCTTGTGGGGTTCAACCATATGTCTGTGGCGTT...ATTATACTGACATAAGCAAGTCAGCTTGTCACACGGATTCTCTGGCTGACTCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CAA 90 bp | AACCAAATTAAATTCAGGAGTAACAATAACGCCACAGACATATGGTaGAACCCCACAAGGTTATTTTCTCCTCATACAGCAGTTTGCCTT | + |
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Preference number: 2 (lower is better) Translates to: NQIKFRSNNNATDIW*NPTRLFSPHTAVCL Trigger: AAGGCAAACTGCTGTATGAGGAGAAAATAACCTTGTGGGGTTCAACCATATGTCTGTGGCGTTATTGTTACTCCTGAATTTAATTTGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR TCA 72 bp | CAGCAGCCTCGATGGCCTCCCCTCCTGTCTCCAGCATaGAACTTCCTCTTCCTCCCTGGGGCCTTCCCACGG | + |
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Preference number: 3 (lower is better) Translates to: QQPRWPPLLSPA*NFLFLPGAFPR Trigger: CCGTGGGAAGGCCCCAGGGAGGAAGAGGAAGTTTCATGCTGGAGACAGGAGGGGAGGCCATCGAGGCTGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR TCA 72 bp | GGTTTCTTCCCTGCGCTGGGCCCTGAGGACACGGAGTaGACTATGAGGCAGCATAGCCTCAGGGACACAGAG | + |
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Preference number: 3 (lower is better) Translates to: GFFPALGPEDTE*TMRQHSLRDTE Trigger: CTCTGTGTCCCTGAGGCTATGCTGCCTCATAGTTCACTCCGTGTCCTCAGGGCCCAGCGCAGGGAAGAAACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR TCA 72 bp | TCCCTGCGCTGGGCCCTGAGGACACGGAGTGAACTATaGGGCAGCATAGCCTCAGGGACACAGAGAAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: SLRWALRTRSEL*GSIASGTQRRK Trigger: CTTTCTTCTCTGTGTCCCTGAGGCTATGCTGCCTCATAGTTCACTCCGTGTCCTCAGGGCCCAGCGCAGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR GCA 72 bp | GTCACAGCACCGGAGAGGCTGAGACAGGAGCACCATTaGAAGTCTGAGGTCATCCTGGGCAACAATGTGAGG | + |
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Preference number: 3 (lower is better) Translates to: VTAPERLRQEHH*KSEVILGNNVR Trigger: CCTCACATTGTTGCCCAGGATGACCTCAGACTTGCAATGGTGCTCCTGTCTCAGCCTCTCCGGTGCTGTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR TCA 72 bp | GTCTGCTCATTCCAACCTTCAGGATGCCCAGTGCCGTaGACAGAAGACATGAGCTCTCAAGGCAAGGGACGG | + |
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Preference number: 3 (lower is better) Translates to: VCSFQPSGCPVP*TEDMSSQGKGR Trigger: CCGTCCCTTGCCTTGAGAGCTCATGTCTTCTGTTCACGGCACTGGGCATCCTGAAGGTTGGAATGAGCAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR GCA 72 bp | CTTCCTCTTCCTCCCTGGGGCCTTCCCACGGTTAGATaGTCCCCAACCCTACCTCCCTTCAATAGAAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: LPLPPWGLPTVR*SPTLPPFNRKK Trigger: TTTCTTTCTATTGAAGGGAGGTAGGGTTGGGGAGCATCTAACCGTGGGAAGGCCCCAGGGAGGAAGAGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CCA 72 bp | TGGCAAAGCCATGCAGGTAACTGCTCAGGGAGGAAGTaGGCCATGATGGTTTTGAGTAGAGCTTTGGAGCCA | + |
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Preference number: 3 (lower is better) Translates to: WQSHAGNCSGRK*AMMVLSRALEP Trigger: TGGCTCCAAAGCTCTACTCAAAACCATCATGGCCCACTTCCTCCCTGAGCAGTTACCTGCATGGCTTTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CCA 72 bp | AGCCCTTTGACTAGTAGGGGGAGAGGCCTGCAGCTATaGGATATCAGATGTGGCAAAGCCATGCAGGTAACT | + |
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Preference number: 3 (lower is better) Translates to: SPLTSRGRGLQL*DIRCGKAMQVT Trigger: AGTTACCTGCATGGCTTTGCCACATCTGATATCCCATAGCTGCAGGCCTCTCCCCCTACTAGTCAAAGGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR CAA 90 bp | ATCAGGAAGTACATGTCAGATGACACAGGCAAGGAGAAGGGGTCCCTCAACAGCAAGGAATCTCTCTGGTaGTGCTGGGCACAGAGTTCT | + |
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Preference number: 3 (lower is better) Translates to: IRKYMSDDTGKEKGSLNSKESLW*CWAQSS Trigger: AGAACTCTGTGCCCAGCACAACCAGAGAGATTCCTT...GCTGTTGAGGGACCCCTTCTCCTTGCCTGTGTCATCTGACATGTACTTCCTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR TCA 72 bp | TGGGTCCCTTCCCCCTCAAACTGCTCCTCTGAGGCCTaGTCAACTGTGATAGGATTAAGAGATAACGTGGTC | + |
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Preference number: 3 (lower is better) Translates to: WVPSPSNCSSEA*STVIGLRDNVV Trigger: GACCACGTTATCTCTTAATCCTATCACAGTTGATCAGGCCTCAGAGGAGCAGTTTGAGGGGGAAGGGACCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR GCA 72 bp | ACTCTTCATGATGACAGCCATACAACCCCTCTACAGTaGTGGGCTCCAAGAAAGGCGCTACAAGTGTTCCCA | + |
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Preference number: 3 (lower is better) Translates to: TLHDDSHTTPLQ*WAPRKALQVFP Trigger: TGGGAACACTTGTAGCGCCTTTCTTGGAGCCCAGCACTGTAGAGGGGTTGTATGGCTGTCATCATGAAGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR CCA 72 bp | CTTCATGATGACAGCCATACAACCCCTCTACAGTGCTaGGCTCCAAGAAAGGCGCTACAAGTGTTCCCAGTT | + |
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Preference number: 3 (lower is better) Translates to: LHDDSHTTPLQC*APRKALQVFPV Trigger: AACTGGGAACACTTGTAGCGCCTTTCTTGGAGCCCAGCACTGTAGAGGGGTTGTATGGCTGTCATCATGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR CAA 90 bp | AGACTCCCTCATAACCCCATGCAGAAAGCTTGTTCAGATGTTTCAAGACAGAGCATCAGTCCTCTTGGCTaGCCCTTTCCCCTCTCCTAT | + |
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Preference number: 3 (lower is better) Translates to: RLPHNPMQKACSDVSRQSISPLG*PFPLSY Trigger: ATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGAT...GCTCTGTCTTGAAACATCTGAACAAGCTTTCTGCATGGGGTTATGAGGGAGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR CCA 72 bp | CACCACCTATTGAAGGGGAAGTCTCCTACACCTTCATaGATGTGTGCAAAGCTAAACCTACAGACCCGTGAA | + |
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Preference number: 3 (lower is better) Translates to: HHLLKGKSPTPS*MCAKLNLQTRE Trigger: TTCACGGGTCTGTAGGTTTAGCTTTGCACACATCCATGAAGGTGTAGGAGACTTCCCCTTCAATAGGTGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR-3UTR CAA 90 bp | GAGAGTCAGCCAGAGAATCCGTGTGACAAGCTGACTTGCTTATGTCAGTATAATATCAGTCCTCTTGGCTaGCCCTTTCCCCTCTCCTAT | + |
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Preference number: 3 (lower is better) Translates to: ESQPENPCDKLTCLCQYNISPLG*PFPLSY Trigger: ATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGAT...ATTATACTGACATAAGCAAGTCAGCTTGTCACACGGATTCTCTGGCTGACTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| 3UTR TCA 72 bp | CATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATaGGTCTCTGAGGTACATTCATACATTCATGAATGT | + |
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Preference number: 3 (lower is better) Translates to: HQSSWLALSPLL*VSEVHSYIHEC Trigger: ACATTCATGAATGTATGAATGTACCTCAGAGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| 3UTR GCA 72 bp | AAACACTGCCTTTTCCCTTATACATATACACAGGCATaGTATATAGGCGCCTTTCTAATTGCTTTGATTCAG | + |
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Preference number: 3 (lower is better) Translates to: KHCLFPYTYTQA*YIGAFLIALIQ Trigger: CTGAATCAAAGCAATTAGAAAGGCGCCTATATAGCATGCCTGTGTATATGTATAAGGGAAAAGGCAGTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
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| CDS-3UTR TCA 90 bp | CAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTCTCTGAGGGGAAGGTCTCAGAGGTaGAGCGCACCAACAGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: QSISPLGLPFPLSYESLRGRSQR*SAPTVR Trigger: CCTCACTGTTGGTGCGCTTCACCTCTGAGACCTTCC...CCTCAGAGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR TCA 90 bp | GTTTCAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGGTACTCCCCGGTTGCTaGGGGCTGAGCACTCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: VSRQSISPLGLPFPLSYEVLPGC*GLSTPG Trigger: ACCTGGAGTGCTCAGCCCTCAGCAACCGGGGAGTAC...CTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR TCA 90 bp | AAGTACATGTCAGATGACACAGGCAAGGAGAAGGGGTCCCTCAACAGCATCCATCCGGTTGCTGAGGGCTaGGCACTCCAGGTAGCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: KYMSDDTGKEKGSLNSIHPVAEG*ALQVAL Trigger: AAGGGCTACCTGGAGTGCTCAGCCCTCAGCAACCGG...ATGGATGCTGTTGAGGGACCCCTTCTCCTTGCCTGTGTCATCTGACATGTACTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
||
| CDS-3UTR CCA 90 bp | CAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTCTCTGAGGACTCCAGGTAGCCCTTaGCTCTCACATCCTGGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: QSISPLGLPFPLSYESLRTPGSP*LSHPGQ Trigger: TTGCCCAGGATGTGAGAGCCAAGGGCTACCTGGAGT...CCTCAGAGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR TCA 90 bp | GCAGAAAGCTTGTTCAGATGTTTCAAGACAGAGCATCAGTCCTCTTGGCTTGCCGTACTCCCCGGTTGCTaGGGGCTGAGCACTCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: AESLFRCFKTEHQSSWLAVLPGC*GLSTPG Trigger: ACCTGGAGTGCTCAGCCCTCAGCAACCGGGGAGTAC...GGCAAGCCAAGAGGACTGATGCTCTGTCTTGAAACATCTGAACAAGCTTTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| 3UTR CAA 72 bp | AGCCACCAATCAGATGAAGAGGTCCTTCCACTGAGCTaGACTGTGCTGACACCTGATCCCAGACTTCCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SHQSDEEVLPLS*TVLTPDPRLPS Trigger: GCTGGGAAGTCTGGGATCAGGTGTCAGCACAGTCAAGCTCAGTGGAAGGACCTCTTCATCTGATTGGTGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
||
| CDS-3UTR TCA 90 bp | AGACTCCCTCATAACCCCATGCAGAAAGCTTGTTCAGATGTTTCAAGACAGAGCCCGGTTGCTGAGGGCTaGGCACTCCAGGTAGCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: RLPHNPMQKACSDVSRQSPVAEG*ALQVAL Trigger: AAGGGCTACCTGGAGTGCTCAGCCCTCAGCAACCGG...GCTCTGTCTTGAAACATCTGAACAAGCTTTCTGCATGGGGTTATGAGGGAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR GCA 90 bp | AGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTCTCTGAGGTACATTCATCATCAGTACCACGTCTaGCTGCTGGTAGGACAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: SPLGLPFPLSYESLRYIHHQYHV*LLVGQG Trigger: CCCCTGTCCTACCAGCAGGCAGACGTGGTACTGATG...ATGAATGTACCTCAGAGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CCA 90 bp | TCAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTCTACTCCAGGTAGCCCTTaGCTCTCACATCCTGGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: SRQSISPLGLPFPLSYESTPGSP*LSHPGQ Trigger: TTGCCCAGGATGTGAGAGCCAAGGGCTACCTGGAGT...AGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR TCA 90 bp | TTCCCAAGGAATCTCTCTGGTTGTGCTGGGCACAGAGTTCTTCTGCAGAGTAGAGAAGCGCACCAACAGTaGGGTTTTCCCCACAGCACT | + |
|
Preference number: 4 (lower is better) Translates to: FPRNLSGCAGHRVLLQSREAHQQ*GFPHST Trigger: AGTGCTGTGGGGAAAACCTCACTGTTGGTGCGCTTC...TCTACTCTGCAGAAGAACTCTGTGCCCAGCACAACCAGAGAGATTCCTTGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR GCA 90 bp | GCAGAAAGCTTGTTCAGATGTTTCAAGACAGAGCATCAGTCCTCTTGGCTTGCCCATCAGTACCACGTCTaGCTGCTGGTAGGACAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: AESLFRCFKTEHQSSWLAHQYHV*LLVGQG Trigger: CCCCTGTCCTACCAGCAGGCAGACGTGGTACTGATG...GGCAAGCCAAGAGGACTGATGCTCTGTCTTGAAACATCTGAACAAGCTTTCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CCA 90 bp | GTTTCAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGAGACCCAGGCTGATCTaGATGCCATCCATGAAGACG | + |
|
Preference number: 4 (lower is better) Translates to: VSRQSISPLGLPFPLSYERPRLI*MPSMKT Trigger: CGTCTTCATGGATGGCATCCAGATCAGCCTGGGTCT...CTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGAAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR TCA 90 bp | CGCCACAGACATATGGTTGAACCCCACAAGGTTATTTTCTCCTCATACAGCAGTGGAAGGTCTCAGAGGTaGAGCGCACCAACAGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: RHRHMVEPHKVIFSSYSSGRSQR*SAPTVR Trigger: CCTCACTGTTGGTGCGCTTCACCTCTGAGACCTTCC...ACTGCTGTATGAGGAGAAAATAACCTTGTGGGGTTCAACCATATGTCTGTGGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR TCA 90 bp | GAAGACATAGTCCCTGTCTCCTCCTCTGTCTGCTCATTCCAACCTTCAGGATGCTCTGGATGCCATCCATaGAGACGTCTACACCCGTAT | + |
|
Preference number: 4 (lower is better) Translates to: EDIVPVSSSVCSFQPSGCSGCHP*RRLHPY Trigger: ATACGGGTGTAGACGTCTTCATGGATGGCATCCAGA...GCATCCTGAAGGTTGGAATGAGCAGACAGAGGAGGAGACAGGGACTATGTCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
||
| CDS-3UTR GCA 90 bp | TCAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTCTGCACATTCAAATACCTaGTGTACTCCCCGGTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SRQSISPLGLPFPLSYESAHSNT*CTPRLL Trigger: CAGCAACCGGGGAGTACAGCAGGTATTTGAATGTGC...AGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CCA 90 bp | ATCAGGAAGTACATGTCAGATGACACAGGCAAGGAGAAGGGGTCCCTCAACAGCTTGGCTCTCACATCCTaGGCAAGTCTCTTCCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: IRKYMSDDTGKEKGSLNSLALTS*ASLFPS Trigger: AGAAGGGAAGAGACTTGCCCAGGATGTGAGAGCCAA...GCTGTTGAGGGACCCCTTCTCCTTGCCTGTGTCATCTGACATGTACTTCCTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
||
| 3UTR CAA 72 bp | TCAGATGTTTCAAGACAGAGCATCAGTCCTCTTGGCTaGCCCTTTCCCCTCTCCTATGAGTCTCTGAGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: SDVSRQSISPLG*PFPLSYESLRY Trigger: GTACCTCAGAGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGAAACATCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR TCA 90 bp | GAGAGTCAGCCAGAGAATCCGTGTGACAAGCTGACTTGCTTATGTCAGTATAATGAAGCGCACCAACAGTaGGGTTTTCCCCACAGCACT | + |
|
Preference number: 4 (lower is better) Translates to: ESQPENPCDKLTCLCQYNEAHQQ*GFPHST Trigger: AGTGCTGTGGGGAAAACCTCACTGTTGGTGCGCTTC...ATTATACTGACATAAGCAAGTCAGCTTGTCACACGGATTCTCTGGCTGACTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
||
| CDS-3UTR CCA 90 bp | CGCCACAGACATATGGTTGAACCCCACAAGGTTATTTTCTCCTCATACAGCAGTTATTCTCGTACACCGTaGGTTTGTAGGCCTCCGGGA | + |
|
Preference number: 4 (lower is better) Translates to: RHRHMVEPHKVIFSSYSSYSRTP*VCRPPG Trigger: TCCCGGAGGCCTACAAACCCACGGTGTACGAGAATA...ACTGCTGTATGAGGAGAAAATAACCTTGTGGGGTTCAACCATATGTCTGTGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CCA 90 bp | GCAGAAAGCTTGTTCAGATGTTTCAAGACAGAGCATCAGTCCTCTTGGCTTGCCTTGGCTCTCACATCCTaGGCAAGTCTCTTCCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: AESLFRCFKTEHQSSWLALALTS*ASLFPS Trigger: AGAAGGGAAGAGACTTGCCCAGGATGTGAGAGCCAA...GGCAAGCCAAGAGGACTGATGCTCTGTCTTGAAACATCTGAACAAGCTTTCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CCA 90 bp | TCCCTCATAACCCCATGCAGAAAGCTTGTTCAGATGTTTCAAGACAGAGCATCATATTCTCGTACACCGTaGGTTTGTAGGCCTCCGGGA | + |
|
Preference number: 4 (lower is better) Translates to: SLITPCRKLVQMFQDRASYSRTP*VCRPPG Trigger: TCCCGGAGGCCTACAAACCCACGGTGTACGAGAATA...TGATGCTCTGTCTTGAAACATCTGAACAAGCTTTCTGCATGGGGTTATGAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CCA 90 bp | TCCCTCATAACCCCATGCAGAAAGCTTGTTCAGATGTTTCAAGACAGAGCATCAAGACCCAGGCTGATCTaGATGCCATCCATGAAGACG | + |
|
Preference number: 4 (lower is better) Translates to: SLITPCRKLVQMFQDRASRPRLI*MPSMKT Trigger: CGTCTTCATGGATGGCATCCAGATCAGCCTGGGTCT...TGATGCTCTGTCTTGAAACATCTGAACAAGCTTTCTGCATGGGGTTATGAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR TCA 90 bp | ATGTTTCAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGATCTTGCATTCATTaGTGGAGAACAGCTTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: MFQDRASVLLACPFPSPMRSCIH*WRTASF Trigger: GAAGGAAGCTGTTCTCCATCAATGAATGCAAGATCT...CATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGAAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR TCA 90 bp | AGACTCCCTCATAACCCCATGCAGAAAGCTTGTTCAGATGTTTCAAGACAGAGCAGATCTTGCATTCATTaGTGGAGAACAGCTTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: RLPHNPMQKACSDVSRQSRSCIH*WRTASF Trigger: GAAGGAAGCTGTTCTCCATCAATGAATGCAAGATCT...GCTCTGTCTTGAAACATCTGAACAAGCTTTCTGCATGGGGTTATGAGGGAGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR GCA 90 bp | AACAGTAAAAGTCATAAACACTGCCTTTTCCCTTATACATATACACAGGCATGCGCACATTCAAATACCTaGTGTACTCCCCGGTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: NSKSHKHCLFPYTYTQACAHSNT*CTPRLL Trigger: CAGCAACCGGGGAGTACAGCAGGTATTTGAATGTGC...GCATGCCTGTGTATATGTATAAGGGAAAAGGCAGTGTTTATGACTTTTACTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
||
| 3UTR CAA 72 bp | CCAAGAAAGGCGCTACAAGTGTTCCCAGTTATCAGATaGGAACTACAAATGATACATCAGGGTGTAGAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: PRKALQVFPVIR*ELQMIHQGVEK Trigger: CTTTTCTACACCCTGATGTATCATTTGTAGTTCCAATCTGATAACTGGGAACACTTGTAGCGCCTTTCTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
||
| CDS-3UTR CCA 90 bp | AACAGTAAAAGTCATAAACACTGCCTTTTCCCTTATACATATACACAGGCATGCGGAACGAGTTATGGTTaGCCACAGAGTAGCACATCA | + |
|
Preference number: 4 (lower is better) Translates to: NSKSHKHCLFPYTYTQACGTSYG*PQSSTS Trigger: TGATGTGCTACTCTGTGGCCAACCATAACTCGTTCC...GCATGCCTGTGTATATGTATAAGGGAAAAGGCAGTGTTTATGACTTTTACTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
||
| CDS TCA 90 bp | TGGGCAAGTCTCTTCCCTTCTATGGCATTGATGCAGGAAGCCCTGTaGGGTCCCACCTCTCTCTGGTCCGTCTGTGTGGCCACAACCAGC | + |
|
Preference number: 5 (lower is better) Translates to: WASLFPSMALMQEAL*GPTSLWSVCVATTS Trigger: GCTGGTTGTGGCCACACAGACGGACCAGAGAGAGGTGGGACCTCACAGGGCTTCCTGCATCAATGCCATAGAAGGGAAGAGACTTGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS CCA 90 bp | CTGAAGGCGTCGTTGCCGGCAGTGTCCCAGAGACCCAGGCTGATCTaGATGCCATCCATGAAGACGTCTACACCCGTATTCTCGTACACC | + |
|
Preference number: 5 (lower is better) Translates to: LKASLPAVSQRPRLI*MPSMKTSTPVFSYT Trigger: GGTGTACGAGAATACGGGTGTAGACGTCTTCATGGATGGCATCCAGATCAGCCTGGGTCTCTGGGACACTGCCGGCAACGACGCCTTCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CAA 90 bp | CAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTCTCCGCCTCCTGGCCTGGTaGACAGCTGTTCGGACAGCA | + |
|
Preference number: 5 (lower is better) Translates to: QDRASVLLACPFPSPMSLRLLAW*TAVRTA Trigger: TGCTGTCCGAACAGCTGTCAACCAGGCCAGGAGGCG...GAGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CAA 90 bp | CAGACTGTATCCACAGAGAGTCAGCCAGAGAATCCGTGTGACAAGCTGACTTGCTGCTGTACTCCCCGGTaGCTGAGGGCTGAGCACTCC | + |
|
Preference number: 5 (lower is better) Translates to: QTVSTESQPENPCDKLTCCCTPR*LRAEHS Trigger: GGAGTGCTCAGCCCTCAGCAACCGGGGAGTACAGCA...GCAAGTCAGCTTGTCACACGGATTCTCTGGCTGACTCTCTGTGGATACAGTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031106.8 |
||
| CDS-3UTR CAA 90 bp | GTTTCAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTGCTGTACTCCCCGGTaGCTGAGGGCTGAGCACTCC | + |
|
Preference number: 5 (lower is better) Translates to: VSRQSISPLGLPFPLSYECCTPR*LRAEHS Trigger: GGAGTGCTCAGCCCTCAGCAACCGGGGAGTACAGCA...CTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CAA 90 bp | TCAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTCTCGCCTCCTGGCCTGGTaGACAGCTGTTCGGACAGCA | + |
|
Preference number: 5 (lower is better) Translates to: SRQSISPLGLPFPLSYESRLLAW*TAVRTA Trigger: TGCTGTCCGAACAGCTGTCAACCAGGCCAGGAGGCG...AGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS GCA 90 bp | GAACGAGTTATGGTTGGCCACAGAGTAGCACATCAGTACCACGTCTaGCTGCTGGTAGGACAGGGGCCGGATACTTCTGAAGGCGTCGTT | + |
|
Preference number: 5 (lower is better) Translates to: ERVMVGHRVAHQYHV*LLVGQGPDTSEGVV Trigger: AACGACGCCTTCAGAAGTATCCGGCCCCTGTCCTACCAGCAGGCAGACGTGGTACTGATGTGCTACTCTGTGGCCAACCATAACTCGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CAA 90 bp | TCAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTCTCTTCTGAAGGCGTCGTaGCCGGCAGTGTCCCAGAGA | + |
|
Preference number: 5 (lower is better) Translates to: SRQSISPLGLPFPLSYESLLKAS*PAVSQR Trigger: TCTCTGGGACACTGCCGGCAACGACGCCTTCAGAAG...AGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS CCA 90 bp | CATTCATTGATGGAGAACAGCTTCCTTCTGTTTCGCCTCCTGGCCTaGTTGACAGCTGTTCGGACAGCACATTCAAATACCTGCTGTACT | + |
|
Preference number: 5 (lower is better) Translates to: HSLMENSFLLFRLLA*LTAVRTAHSNTCCT Trigger: AGTACAGCAGGTATTTGAATGTGCTGTCCGAACAGCTGTCAACCAGGCCAGGAGGCGAAACAGAAGGAAGCTGTTCTCCATCAATGAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CAA 90 bp | CGCCACAGACATATGGTTGAACCCCACAAGGTTATTTTCTCCTCATACAGCAGTGGGGTACAGGGTAGGTaGCTCCTGATCTCACTAATC | + |
|
Preference number: 5 (lower is better) Translates to: RHRHMVEPHKVIFSSYSSGVQGR*LLISLI Trigger: GATTAGTGAGATCAGGAGCAACCTACCCTGTACCCC...ACTGCTGTATGAGGAGAAAATAACCTTGTGGGGTTCAACCATATGTCTGTGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CAA 90 bp | TCCCTCATAACCCCATGCAGAAAGCTTGTTCAGATGTTTCAAGACAGAGCATCAGGGGTACAGGGTAGGTaGCTCCTGATCTCACTAATC | + |
|
Preference number: 5 (lower is better) Translates to: SLITPCRKLVQMFQDRASGVQGR*LLISLI Trigger: GATTAGTGAGATCAGGAGCAACCTACCCTGTACCCC...TGATGCTCTGTCTTGAAACATCTGAACAAGCTTTCTGCATGGGGTTATGAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CAA 90 bp | CAAGACAGAGCATCAGTCCTCTTGGCTTGCCCTTTCCCCTCTCCTATGAGTCTCAAGATCTTGCATTCATaGATGGAGAACAGCTTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: QDRASVLLACPFPSPMSLKILHS*MENSFL Trigger: AAGGAAGCTGTTCTCCATCAATGAATGCAAGATCTT...GAGACTCATAGGAGAGGGGAAAGGGCAAGCCAAGAGGACTGATGCTCTGTCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS-3UTR CAA 90 bp | CGCCACAGACATATGGTTGAACCCCACAAGGTTATTTTCTCCTCATACAGCAGTAAGATCTTGCATTCATaGATGGAGAACAGCTTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: RHRHMVEPHKVIFSSYSSKILHS*MENSFL Trigger: AAGGAAGCTGTTCTCCATCAATGAATGCAAGATCTT...ACTGCTGTATGAGGAGAAAATAACCTTGTGGGGTTCAACCATATGTCTGTGGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS TCA 72 bp | CGTCTGCCTGCTGGTAGGACAGGGGCCGGATACTTCTaGAGGCGTCGTTGCCGGCAGTGTCCCAGAGACCCA | + |
|
Preference number: 6 (lower is better) Translates to: RLPAGRTGAGYF*RRRCRQCPRDP Trigger: TGGGTCTCTGGGACACTGCCGGCAACGACGCCTTCAGAAGTATCCGGCCCCTGTCCTACCAGCAGGCAGACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS CCA 72 bp | CCCTGTGAGGTCCCACCTCTCTCTGGTCCGTCTGTGTaGCCACAACCAGCACCGGGGTACAGGGTAGGTTGC | + |
|
Preference number: 6 (lower is better) Translates to: PCEVPPLSGPSV*PQPAPGYRVGC Trigger: GCAACCTACCCTGTACCCCGGTGCTGGTTGTGGCCACACAGACGGACCAGAGAGAGGTGGGACCTCACAGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS GCA 72 bp | ATGGTTGGCCACAGAGTAGCACATCAGTACCACGTCTaGCTGCTGGTAGGACAGGGGCCGGATACTTCTGAA | + |
|
Preference number: 6 (lower is better) Translates to: MVGHRVAHQYHV*LLVGQGPDTSE Trigger: TTCAGAAGTATCCGGCCCCTGTCCTACCAGCAGGCAGACGTGGTACTGATGTGCTACTCTGTGGCCAACCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS GCA 72 bp | TGGTTGACAGCTGTTCGGACAGCACATTCAAATACCTaGTGTACTCCCCGGTTGCTGAGGGCTGAGCACTCC | + |
|
Preference number: 6 (lower is better) Translates to: WLTAVRTAHSNT*CTPRLLRAEHS Trigger: GGAGTGCTCAGCCCTCAGCAACCGGGGAGTACAGCAGGTATTTGAATGTGCTGTCCGAACAGCTGTCAACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
||
| CDS CAA 72 bp | GAGAACAGCTTCCTTCTGTTTCGCCTCCTGGCCTGGTaGACAGCTGTTCGGACAGCACATTCAAATACCTGC | + |
|
Preference number: 6 (lower is better) Translates to: ENSFLLFRLLAW*TAVRTAHSNTC Trigger: GCAGGTATTTGAATGTGCTGTCCGAACAGCTGTCAACCAGGCCAGGAGGCGAAACAGAAGGAAGCTGTTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| CDS CAA 90 bp | TGGTCCGTCTGTGTGGCCACAACCAGCACCGGGGTACAGGGTAGGTaGCTCCTGATCTCACTAATCCATTTGTTCTTCAAGTTCAGGAAC | + |
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Preference number: 6 (lower is better) Translates to: WSVCVATTSTGVQGR*LLISLIHLFFKFRN Trigger: GTTCCTGAACTTGAAGAACAAATGGATTAGTGAGATCAGGAGCAACCTACCCTGTACCCCGGTGCTGGTTGTGGCCACACAGACGGACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| CDS CAA 90 bp | TCATTGATGGAGAACAGCTTCCTTCTGTTTCGCCTCCTGGCCTGGTaGACAGCTGTTCGGACAGCACATTCAAATACCTGCTGTACTCCC | + |
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Preference number: 6 (lower is better) Translates to: SLMENSFLLFRLLAW*TAVRTAHSNTCCTP Trigger: GGGAGTACAGCAGGTATTTGAATGTGCTGTCCGAACAGCTGTCAACCAGGCCAGGAGGCGAAACAGAAGGAAGCTGTTCTCCATCAATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| CDS CAA 72 bp | TGTGTGGCCACAACCAGCACCGGGGTACAGGGTAGGTaGCTCCTGATCTCACTAATCCATTTGTTCTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: CVATTSTGVQGR*LLISLIHLFFK Trigger: CTTGAAGAACAAATGGATTAGTGAGATCAGGAGCAACCTACCCTGTACCCCGGTGCTGGTTGTGGCCACACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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| CDS CCA 72 bp | TCCATTTGTTCTTCAAGTTCAGGAACGAGTTATGGTTaGCCACAGAGTAGCACATCAGTACCACGTCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: SICSSSSGTSYG*PQSSTSVPRLP Trigger: AGGCAGACGTGGTACTGATGTGCTACTCTGTGGCCAACCATAACTCGTTCCTGAACTTGAAGAACAAATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031106.8 ENSMUST00000201533.2 |
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