Pregenerated sensors for RHOG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073982Ensembl transcript IDs: ENSMUST00000098230.11, ENSMUST00000106923.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGGCATCACAACAGGCAGCAACAACTTTGGAAAGCTGGATGAACTaGTCAGTAGCAGGGAATGGAGGCGAGCACCGGGTTGGCCTCTTA | + |
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Preference number: 1 (lower is better) Translates to: EASQQAATTLESWMN*SVAGNGGEHRVGLL Trigger: TAAGAGGCCAACCCGGTGCTCGCCTCCATTCCCTGCTACTGACCAGTTCATCCAGCTTTCCAAAGTTGTTGCTGCCTGTTGTGATGCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| 3UTR-3UTR CCA 90 bp | TTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGAGTCCTTAAGGCACAGCTaGGGGCAGACAAGGCGCCAA | + |
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Preference number: 2 (lower is better) Translates to: FGGGREHLGEPSPRAKAESLRHS*GQTRRQ Trigger: TTGGCGCCTTGTCTGCCCCCAGCTGTGCCTTAAGGA...CTCTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| 3UTR-3UTR CCA 90 bp | GTTGAACTCATGGAATACTTGGTATTCCCAAGCAGAGTGGGGTGGGGCCCAAAGTCCTTAAGGCACAGCTaGGGGCAGACAAGGCGCCAA | + |
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Preference number: 2 (lower is better) Translates to: VELMEYLVFPSRVGWGPKSLRHS*GQTRRQ Trigger: TTGGCGCCTTGTCTGCCCCCAGCTGTGCCTTAAGGA...CTTTGGGCCCCACCCCACTCTGCTTGGGAATACCAAGTATTCCATGAGTTCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| 3UTR-3UTR CCA 90 bp | TTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGAGGAAAGCTGGATGAACTaGTCAGTAGCAGGGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: FGGGREHLGEPSPRAKAEESWMN*SVAGNG Trigger: TCCATTCCCTGCTACTGACCAGTTCATCCAGCTTTC...CTCTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| 3UTR-3UTR CCA 90 bp | TTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGAGAACTCATGGAATACTTaGTATTCCCAAGCAGAGTGG | + |
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Preference number: 2 (lower is better) Translates to: FGGGREHLGEPSPRAKAENSWNT*YSQAEW Trigger: CCACTCTGCTTGGGAATACCAAGTATTCCATGAGTT...CTCTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGCAACAACTTTGGAAAGCTGGATGAACTGGTCAGTAGCAGGGAATGGAGGCAACTCATGGAATACTTaGTATTCCCAAGCAGAGTGG | + |
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Preference number: 2 (lower is better) Translates to: AATTLESWMNWSVAGNGGNSWNT*YSQAEW Trigger: CCACTCTGCTTGGGAATACCAAGTATTCCATGAGTT...GCCTCCATTCCCTGCTACTGACCAGTTCATCCAGCTTTCCAAAGTTGTTGCTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| 3UTR CCA 72 bp | CAACAGGCAGCAACAACTTTGGAAAGCTGGATGAACTaGTCAGTAGCAGGGAATGGAGGCGAGCACCGGGTT | + |
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Preference number: 3 (lower is better) Translates to: QQAATTLESWMN*SVAGNGGEHRV Trigger: AACCCGGTGCTCGCCTCCATTCCCTGCTACTGACCAGTTCATCCAGCTTTCCAAAGTTGTTGCTGCCTGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR TCA 90 bp | TGGATGAACTGGTCAGTAGCAGGGAATGGAGGCGAGCACCGGGTTGGCCTCTTAGGAGTGATGGGCGCTTaGCCCTGCTCCTTGAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: WMNWSVAGNGGEHRVGLLGVMGA*PCSLRR Trigger: GCGCCTCAAGGAGCAGGGTCAAGCGCCCATCACTCC...TAAGAGGCCAACCCGGTGCTCGCCTCCATTCCCTGCTACTGACCAGTTCATCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR GCA 90 bp | ACGGGGCCTGAGTCAGTCAGCAGGCGCGTAAGTCCTGGGCACATGGGGCAGGTTGAGGGTAGGAAAGGGTaGGGAGGCGGTCATATTCCT | + |
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Preference number: 4 (lower is better) Translates to: TGPESVSRRVSPGHMGQVEGRKG*GGGHIP Trigger: AGGAATATGACCGCCTCCGCACCCTTTCCTACCCTC...AACCTGCCCCATGTGCCCAGGACTTACGCGCCTGCTGACTGACTCAGGCCCCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR GCA 90 bp | CCTTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGGCCAGTGCCTGGCCCTaGTGTGGAGTGATGGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: PLGEGENILESLVQELRQASAWP*CGVMGA Trigger: AGCGCCCATCACTCCACAGCAGGGCCAGGCACTGGC...CTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR TCA 90 bp | GCAGCAACAACTTTGGAAAGCTGGATGAACTGGTCAGTAGCAGGGAATGGAGGCGGAGTGATGGGCGCTTaGCCCTGCTCCTTGAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: AATTLESWMNWSVAGNGGGVMGA*PCSLRR Trigger: GCGCCTCAAGGAGCAGGGTCAAGCGCCCATCACTCC...GCCTCCATTCCCTGCTACTGACCAGTTCATCCAGCTTTCCAAAGTTGTTGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CCA 90 bp | GGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGAGAGAGCAGCATGGATCTGCTTaGCCAGTGCCTGGCCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GEGENILESLVQELRQREQHGSA*PVPGPA Trigger: AGCAGGGCCAGGCACTGGCCAAGCAGATCCATGCTG...CTCTCTCTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CCA 90 bp | CCTTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGCAGCATGGATCTGCTTaGCCAGTGCCTGGCCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: PLGEGENILESLVQELRQQHGSA*PVPGPA Trigger: AGCAGGGCCAGGCACTGGCCAAGCAGATCCATGCTG...CTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR TCA 90 bp | CCTTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGACGTCAGGGCAGTGGTaGCAAACCTCTGGGTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: PLGEGENILESLVQELRQTSGQW*QTSGCH Trigger: ATGGCACCCAGAGGTTTGTCACCACTGCCCTGACGT...CTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR TCA 90 bp | GGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGAGAGAGGTCTTGTTGCAGTGCTaGGCACTCGAGGTAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: GEGENILESLVQELRQREVLLQC*ALEVAH Trigger: GTGCGCTACCTCGAGTGCTCAGCACTGCAACAAGAC...CTCTCTCTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CCA 90 bp | TTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGAGTGCTTGGCCAGTGCCTaGCCCTGCTGTGGAGTGATG | + |
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Preference number: 4 (lower is better) Translates to: FGGGREHLGEPSPRAKAECLASA*PCCGVM Trigger: CATCACTCCACAGCAGGGCCAGGCACTGGCCAAGCA...CTCTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR TCA 90 bp | GAGGTTAGAGCCCCTGTCTTAGGAGGCATCACAACAGGCAGCAACAACTTTGGACTTGACCCTGCTCCTTaGGGCGCCGTAGGGTATCAG | + |
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Preference number: 4 (lower is better) Translates to: EVRAPVLGGITTGSNNFGLDPAP*GAVGYQ Trigger: CTGATACCCTACGGCGCCTCAAGGAGCAGGGTCAAG...TCCAAAGTTGTTGCTGCCTGTTGTGATGCCTCCTAAGACAGGGGCTCTAACCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR GCA 90 bp | TTAGGAGGCATCACAACAGGCAGCAACAACTTTGGAAAGCTGGATGAACTGGTCGCCAGTGCCTGGCCCTaGTGTGGAGTGATGGGCGCT | + |
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Preference number: 4 (lower is better) Translates to: LGGITTGSNNFGKLDELVASAWP*CGVMGA Trigger: AGCGCCCATCACTCCACAGCAGGGCCAGGCACTGGC...GACCAGTTCATCCAGCTTTCCAAAGTTGTTGCTGCCTGTTGTGATGCCTCCTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CCA 90 bp | CCTTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGCGTAGGGTATCAGGCTaGGCTCTCAGGTCCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: PLGEGENILESLVQELRQRRVSG*ALRSFL Trigger: CAAGAAGGACCTGAGAGCCCAGCCTGATACCCTACG...CTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CCA 90 bp | TTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGAGCGTAGGGTATCAGGCTaGGCTCTCAGGTCCTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: FGGGREHLGEPSPRAKAERRVSG*ALRSFL Trigger: CAAGAAGGACCTGAGAGCCCAGCCTGATACCCTACG...CTCTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR GCA 90 bp | CCTGTCTTAGGAGGCATCACAACAGGCAGCAACAACTTTGGAAAGCTGGATGAAGATCTGCTTGGCCAGTaGCTGGCCCTGCTGTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: PVLGGITTGSNNFGKLDEDLLGQ*LALLWS Trigger: ACTCCACAGCAGGGCCAGGCACTGGCCAAGCAGATC...TTCATCCAGCTTTCCAAAGTTGTTGCTGCCTGTTGTGATGCCTCCTAAGACAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR TCA 90 bp | GTCTTAGGAGGCATCACAACAGGCAGCAACAACTTTGGAAAGCTGGATGAACTGACGTCAGGGCAGTGGTaGCAAACCTCTGGGTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: VLGGITTGSNNFGKLDELTSGQW*QTSGCH Trigger: ATGGCACCCAGAGGTTTGTCACCACTGCCCTGACGT...CAGTTCATCCAGCTTTCCAAAGTTGTTGCTGCCTGTTGTGATGCCTCCTAAGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR TCA 90 bp | GTCTTAGGAGGCATCACAACAGGCAGCAACAACTTTGGAAAGCTGGATGAACTGGTCTTGTTGCAGTGCTaGGCACTCGAGGTAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: VLGGITTGSNNFGKLDELVLLQC*ALEVAH Trigger: GTGCGCTACCTCGAGTGCTCAGCACTGCAACAAGAC...CAGTTCATCCAGCTTTCCAAAGTTGTTGCTGCCTGTTGTGATGCCTCCTAAGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CCA 90 bp | CCTTTGGGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGGTTCTCATAGGAGGGTaGACTGGCAATGGAGAAACA | + |
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Preference number: 4 (lower is better) Translates to: PLGEGENILESLVQELRQVLIGG*TGNGET Trigger: TGTTTCTCCATTGCCAGTCCACCCTCCTATGAGAAC...CTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCCCAAAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR GCA 90 bp | CCTGTCTTAGGAGGCATCACAACAGGCAGCAACAACTTTGGAAAGCTGGATGAAGAGGGTAGGAAAGGGTaGGGAGGCGGTCATATTCCT | + |
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Preference number: 4 (lower is better) Translates to: PVLGGITTGSNNFGKLDEEGRKG*GGGHIP Trigger: AGGAATATGACCGCCTCCGCACCCTTTCCTACCCTC...TTCATCCAGCTTTCCAAAGTTGTTGCTGCCTGTTGTGATGCCTCCTAAGACAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CCA 90 bp | AACTTTGGAAAGCTGGATGAACTGGTCAGTAGCAGGGAATGGAGGCGAGCACCGGTTCTCATAGGAGGGTaGACTGGCAATGGAGAAACA | + |
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Preference number: 4 (lower is better) Translates to: NFGKLDELVSSREWRRAPVLIGG*TGNGET Trigger: TGTTTCTCCATTGCCAGTCCACCCTCCTATGAGAAC...CGGTGCTCGCCTCCATTCCCTGCTACTGACCAGTTCATCCAGCTTTCCAAAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR TCA 90 bp | GAGGTTAGAGCCCCTGTCTTAGGAGGCATCACAACAGGCAGCAACAACTTTGGACAATGGAGAAACAGATaGCGAAGACGTTGGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: EVRAPVLGGITTGSNNFGQWRNR*RRRWSE Trigger: CTCAGACCAACGTCTTCGTCATCTGTTTCTCCATTG...TCCAAAGTTGTTGCTGCCTGTTGTGATGCCTCCTAAGACAGGGGCTCTAACCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| 3UTR CAA 72 bp | TTAGGTAAACCTGGCTTAGTTGAACTCATGGAATACTaGGTATTCCCAAGCAGAGTGGGGTGGGGCCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: LGKPGLVELMEY*VFPSRVGWGPK Trigger: CTTTGGGCCCCACCCCACTCTGCTTGGGAATACCAAGTATTCCATGAGTTCAACTAAGCCAGGTTTACCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR TCA 90 bp | TTAGGAGGCATCACAACAGGCAGCAACAACTTTGGAAAGCTGGATGAACTGGTCCAATGGAGAAACAGATaGCGAAGACGTTGGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LGGITTGSNNFGKLDELVQWRNR*RRRWSE Trigger: CTCAGACCAACGTCTTCGTCATCTGTTTCTCCATTG...GACCAGTTCATCCAGCTTTCCAAAGTTGTTGCTGCCTGTTGTGATGCCTCCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS TCA 90 bp | GACAGCCTCCGCAAACACCTCCTTGACGCCGTCTTGTTGCAGTGCTaGGCACTCGAGGTAGCGCACAGCATGGATCTGCTTGGCCAGTGC | + |
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Preference number: 5 (lower is better) Translates to: DSLRKHLLDAVLLQC*ALEVAHSMDLLGQC Trigger: GCACTGGCCAAGCAGATCCATGCTGTGCGCTACCTCGAGTGCTCAGCACTGCAACAAGACGGCGTCAAGGAGGTGTTTGCGGAGGCTGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CAA 90 bp | TGGATGAACTGGTCAGTAGCAGGGAATGGAGGCGAGCACCGGGTTGGCCTCTTATGGAGTGATGGGCGCTaGACCCTGCTCCTTGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: WMNWSVAGNGGEHRVGLLWSDGR*TLLLEA Trigger: CGCCTCAAGGAGCAGGGTCAAGCGCCCATCACTCCA...TAAGAGGCCAACCCGGTGCTCGCCTCCATTCCCTGCTACTGACCAGTTCATCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CAA 90 bp | GGGGAGGGAGAGAACATCTTGGAGAGCCTAGTCCAAGAGCTAAGGCAGAGAGAGACAGCATGGATCTGCTaGGCCAGTGCCTGGCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: GEGENILESLVQELRQRETAWIC*ASAWPC Trigger: GCAGGGCCAGGCACTGGCCAAGCAGATCCATGCTGT...CTCTCTCTGCCTTAGCTCTTGGACTAGGCTCTCCAAGATGTTCTCTCCCTCCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CAA 90 bp | AACTTTGGAAAGCTGGATGAACTGGTCAGTAGCAGGGAATGGAGGCGAGCACCGATGAGAAGGCACGTCTaGCCTACGGCCCCATCGCCC | + |
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Preference number: 5 (lower is better) Translates to: NFGKLDELVSSREWRRAPMRRHV*PTAPSP Trigger: GGGCGATGGGGCCGTAGGCAAGACGTGCCTTCTCAT...CGGTGCTCGCCTCCATTCCCTGCTACTGACCAGTTCATCCAGCTTTCCAAAGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CAA 90 bp | GGCAGCAACAACTTTGGAAAGCTGGATGAACTGGTCAGTAGCAGGGAATGGAGGATGAGAAGGCACGTCTaGCCTACGGCCCCATCGCCC | + |
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Preference number: 5 (lower is better) Translates to: GSNNFGKLDELVSSREWRMRRHV*PTAPSP Trigger: GGGCGATGGGGCCGTAGGCAAGACGTGCCTTCTCAT...CCTCCATTCCCTGCTACTGACCAGTTCATCCAGCTTTCCAAAGTTGTTGCTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS-3UTR CAA 90 bp | GCAGCAACAACTTTGGAAAGCTGGATGAACTGGTCAGTAGCAGGGAATGGAGGCTGGAGTGATGGGCGCTaGACCCTGCTCCTTGAGGCG | + |
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Preference number: 5 (lower is better) Translates to: AATTLESWMNWSVAGNGGWSDGR*TLLLEA Trigger: CGCCTCAAGGAGCAGGGTCAAGCGCCCATCACTCCA...GCCTCCATTCCCTGCTACTGACCAGTTCATCCAGCTTTCCAAAGTTGTTGCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS GCA 72 bp | CTCGAGGTAGCGCACAGCATGGATCTGCTTGGCCAGTaGCTGGCCCTGCTGTGGAGTGATGGGCGCTTGACC | + |
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Preference number: 6 (lower is better) Translates to: LEVAHSMDLLGQ*LALLWSDGRLT Trigger: GGTCAAGCGCCCATCACTCCACAGCAGGGCCAGGCACTGGCCAAGCAGATCCATGCTGTGCGCTACCTCGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS CCA 72 bp | CAAGAGGATGCAGGACCGCCCACGCTTTATCGGTGTTaGGTTAAGCACCGCCCGGACAGCCTCCGCAAACAC | + |
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Preference number: 6 (lower is better) Translates to: QEDAGPPTLYRC*VKHRPDSLRKH Trigger: GTGTTTGCGGAGGCTGTCCGGGCGGTGCTTAACCCAACACCGATAAAGCGTGGGCGGTCCTGCATCCTCTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS TCA 72 bp | CGCAAACACCTCCTTGACGCCGTCTTGTTGCAGTGCTaGGCACTCGAGGTAGCGCACAGCATGGATCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: RKHLLDAVLLQC*ALEVAHSMDLL Trigger: AAGCAGATCCATGCTGTGCGCTACCTCGAGTGCTCAGCACTGCAACAAGACGGCGTCAAGGAGGTGTTTGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS CCA 72 bp | GAGGATAGGCACGTCAGGGCAGTGGTGACAAACCTCTaGGTGCCATTTGTGCCTCACGTTCTCATAGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: EDRHVRAVVTNL*VPFVPHVLIGG Trigger: CCCTCCTATGAGAACGTGAGGCACAAATGGCACCCAGAGGTTTGTCACCACTGCCCTGACGTGCCTATCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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| CDS TCA 72 bp | TCTCATAGGAGGGTGGACTGGCAATGGAGAAACAGATaGCGAAGACGTTGGTCTGAGGGTAGGAAAGGGTGC | + |
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Preference number: 6 (lower is better) Translates to: SHRRVDWQWRNR*RRRWSEGRKGC Trigger: GCACCCTTTCCTACCCTCAGACCAACGTCTTCGTCATCTGTTTCTCCATTGCCAGTCCACCCTCCTATGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098230.11 ENSMUST00000106923.2 |
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