Pregenerated sensors for RHOC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002233Ensembl transcript IDs: ENSMUST00000002303.12, ENSMUST00000106787.8, ENSMUST00000176347.6, ENSMUST00000196817.5
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGTGCAACCTTTGACCTTTATTCATGTCCCCACCAAGTTAAGTCAAATAACAAGGGGCTGGGAAACTCATaGAGTCCTGGGCAGAAAGGA | + |
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Preference number: 2 (lower is better) Translates to: GATFDLYSCPHQVKSNNKGLGNS*SPGQKG Trigger: TCCTTTCTGCCCAGGACTGCATGAGTTTCCCAGCCC...CTTGTTATTTGACTTAACTTGGTGGGGACATGAATAAAGGTCAAAGGTTGCACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002303.12 |
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| 3UTR CCA 72 bp | AAGAAACTGGCAGCATGGAGTCCTACAAGGATGGCGTaGGGGAGGGTAACTGTACCCCTGGGAAGGGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: KKLAAWSPTRMA*GRVTVPLGREG Trigger: CCCTTCCCTTCCCAGGGGTACAGTTACCCTCCCCCACGCCATCCTTGTAGGACTCCATGCTGCCAGTTTCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | GCAGGGAGGAAGGGCCTAGCAGCCCCCACTTGGGGCTGGGAAACTCATGCAGTCCCAGCTCCACCTGCTTaGCATCCACTTCGATGTCGG | + |
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Preference number: 4 (lower is better) Translates to: AGRKGLAAPTWGWETHAVPAPPA*HPLRCR Trigger: CCGACATCGAAGTGGATGGCAAGCAGGTGGAGCTGG...GACTGCATGAGTTTCCCAGCCCCAAGTGGGGGCTGCTAGGCCCTTCCTCCCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | CCCCTCCGGCGCTTATTCTTCCGGACCTGTAGGCCCGCCCGAGTGGCCATCTCAAGCTCTCTCCTGGTATaGTCATCTTGCCTCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: PLRRLFFRTCRPARVAISSSLLV*SSCLRS Trigger: GGACCTGAGGCAAGATGAGCATACCAGGAGAGAGCT...TGAGATGGCCACTCGGGCGGGCCTACAGGTCCGGAAGAATAAGCGCCGGAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176347.6 |
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| CDS-3UTR GCA 90 bp | CTGGCAGCATGGAGTCCTACAAGGATGGCGTGGGGGAGGGTAACTGTACCCCTGGGCACTGATCCTGTTTaGCATGTCCCGGCCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: LAAWSPTRMAWGRVTVPLGTDPV*HVPAFL Trigger: GAGGAAGGCCGGGACATGGCAAACAGGATCAGTGCC...CAGGGGTACAGTTACCCTCCCCCACGCCATCCTTGTAGGACTCCATGCTGCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | GAAGTCAGAGAATGGGACAGCCCCTCCGGCGCTTATTCTTCCGGACCTGTAGGCCCAGCTCCACCTGCTTaGCATCCACTTCGATGTCGG | + |
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Preference number: 4 (lower is better) Translates to: EVREWDSPSGAYSSGPVGPAPPA*HPLRCR Trigger: CCGACATCGAAGTGGATGGCAAGCAGGTGGAGCTGG...GCCTACAGGTCCGGAAGAATAAGCGCCGGAGGGGCTGTCCCATTCTCTGACTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176347.6 |
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| CDS-3UTR GCA 90 bp | CAGCCCCCACTTGGGGCTGGGAAACTCATGCAGTCCTGGGCAGAAAGGAACCAAGGCACTGATCCTGTTTaGCATGTCCCGGCCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QPPLGAGKLMQSWAERNQGTDPV*HVPAFL Trigger: GAGGAAGGCCGGGACATGGCAAACAGGATCAGTGCC...TTGGTTCCTTTCTGCCCAGGACTGCATGAGTTTCCCAGCCCCAAGTGGGGGCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | GCAGCCCCCACTTGGGGCTGGGAAACTCATGCAGTCCTGGGCAGAAAGGAACCAAGCTCTCTCCTGGTATaGTCATCTTGCCTCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: AAPTWGWETHAVLGRKEPSSLLV*SSCLRS Trigger: GGACCTGAGGCAAGATGAGCATACCAGGAGAGAGCT...TGGTTCCTTTCTGCCCAGGACTGCATGAGTTTCCCAGCCCCAAGTGGGGGCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | CTGGCAGCATGGAGTCCTACAAGGATGGCGTGGGGGAGGGTAACTGTACCCCTGAGCTCTCTCCTGGTATaGTCATCTTGCCTCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: LAAWSPTRMAWGRVTVPLSSLLV*SSCLRS Trigger: GGACCTGAGGCAAGATGAGCATACCAGGAGAGAGCT...CAGGGGTACAGTTACCCTCCCCCACGCCATCCTTGTAGGACTCCATGCTGCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR CCA 90 bp | GCAGCATGGAGTCCTACAAGGATGGCGTGGGGGAGGGTAACTGTACCCCTGGGATGGCCAGCTCTCTCCTaGTATGCTCATCTTGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: AAWSPTRMAWGRVTVPLGWPALS*YAHLAS Trigger: TGAGGCAAGATGAGCATACCAGGAGAGAGCTGGCCA...TCCCAGGGGTACAGTTACCCTCCCCCACGCCATCCTTGTAGGACTCCATGCTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR TCA 90 bp | AAAGTGCTGGTGTGTAATATGGGGAAGGCCAGAGGGACTAAGAGCCCCACCCCCGGTAGCCAAAGGCACTaGTCCTGTTTGCCATGTCCC | + |
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Preference number: 4 (lower is better) Translates to: KVLVCNMGKARGTKSPTPGSQRH*SCLPCP Trigger: GGGACATGGCAAACAGGATCAGTGCCTTTGGCTACC...GGGGGTGGGGCTCTTAGTCCCTCTGGCCTTCCCCATATTACACACCAGCACTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 |
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| CDS-3UTR TCA 90 bp | AAACTGGCAGCATGGAGTCCTACAAGGATGGCGTGGGGGAGGGTAACTGTACCCGGTAGCCAAAGGCACTaGTCCTGTTTGCCATGTCCC | + |
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Preference number: 4 (lower is better) Translates to: KLAAWSPTRMAWGRVTVPGSQRH*SCLPCP Trigger: GGGACATGGCAAACAGGATCAGTGCCTTTGGCTACC...GGGTACAGTTACCCTCCCCCACGCCATCCTTGTAGGACTCCATGCTGCCAGTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | CTAGCAGCCCCCACTTGGGGCTGGGAAACTCATGCAGTCCTGGGCAGAAAGGAAAGCTCTCTCCTGGTATaGTCATCTTGCCTCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: LAAPTWGWETHAVLGRKESSLLV*SSCLRS Trigger: GGACCTGAGGCAAGATGAGCATACCAGGAGAGAGCT...TTCCTTTCTGCCCAGGACTGCATGAGTTTCCCAGCCCCAAGTGGGGGCTGCTAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | GCAGGGAGGAAGGGCCTAGCAGCCCCCACTTGGGGCTGGGAAACTCATGCAGTCCTGGTATGCTCATCTTaGCTCAGGTCCTTTTTATTC | + |
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Preference number: 4 (lower is better) Translates to: AGRKGLAAPTWGWETHAVLVCSS*LRSFLF Trigger: GAATAAAAAGGACCTGAGGCAAGATGAGCATACCAG...GACTGCATGAGTTTCCCAGCCCCAAGTGGGGGCTGCTAGGCCCTTCCTCCCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | AAAGAAACTGGCAGCATGGAGTCCTACAAGGATGGCGTGGGGGAGGGTAACTGTGGCACTGATCCTGTTTaGCATGTCCCGGCCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: KETGSMESYKDGVGEGNCGTDPV*HVPAFL Trigger: GAGGAAGGCCGGGACATGGCAAACAGGATCAGTGCC...ACAGTTACCCTCCCCCACGCCATCCTTGTAGGACTCCATGCTGCCAGTTTCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | AAAAAGAAACTGGCAGCATGGAGTCCTACAAGGATGGCGTGGGGGAGGGTAACTCCAGCTCCACCTGCTTaGCATCCACTTCGATGTCGG | + |
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Preference number: 4 (lower is better) Translates to: KKKLAAWSPTRMAWGRVTPAPPA*HPLRCR Trigger: CCGACATCGAAGTGGATGGCAAGCAGGTGGAGCTGG...AGTTACCCTCCCCCACGCCATCCTTGTAGGACTCCATGCTGCCAGTTTCTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR CCA 90 bp | GGGGAAGTCAGAGAATGGGACAGCCCCTCCGGCGCTTATTCTTCCGGACCTGTAAGGCACGTAGACCTCTaGAAACTGATCTTTGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: GEVREWDSPSGAYSSGPVRHVDL*KLIFAE Trigger: TTCAGCAAAGATCAGTTTCCAGAGGTCTACGTGCCT...TACAGGTCCGGAAGAATAAGCGCCGGAGGGGCTGTCCCATTCTCTGACTTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000176347.6 |
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| CDS-3UTR CCA 90 bp | AAAGTGCTGGTGTGTAATATGGGGAAGGCCAGAGGGACTAAGAGCCCCACCCCCAGGCACGTAGACCTCTaGAAACTGATCTTTGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: KVLVCNMGKARGTKSPTPRHVDL*KLIFAE Trigger: TTCAGCAAAGATCAGTTTCCAGAGGTCTACGTGCCT...GGGGGTGGGGCTCTTAGTCCCTCTGGCCTTCCCCATATTACACACCAGCACTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 |
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| CDS-3UTR CCA 90 bp | AAACTGGCAGCATGGAGTCCTACAAGGATGGCGTGGGGGAGGGTAACTGTACCCAGGCACGTAGACCTCTaGAAACTGATCTTTGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: KLAAWSPTRMAWGRVTVPRHVDL*KLIFAE Trigger: TTCAGCAAAGATCAGTTTCCAGAGGTCTACGTGCCT...GGGTACAGTTACCCTCCCCCACGCCATCCTTGTAGGACTCCATGCTGCCAGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR CCA 90 bp | CCCCCACTTGGGGCTGGGAAACTCATGCAGTCCTGGGCAGAAAGGAACCAAAAAAGGCACGTAGACCTCTaGAAACTGATCTTTGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: PPLGAGKLMQSWAERNQKRHVDL*KLIFAE Trigger: TTCAGCAAAGATCAGTTTCCAGAGGTCTACGTGCCT...TTTTTGGTTCCTTTCTGCCCAGGACTGCATGAGTTTCCCAGCCCCAAGTGGGGG 51% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR GCA 90 bp | CAAAAATATATAAAGTGCTGGTGTGTAATATGGGGAAGGCCAGAGGGACTAAGACCAGCTCCACCTGCTTaGCATCCACTTCGATGTCGG | + |
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Preference number: 4 (lower is better) Translates to: QKYIKCWCVIWGRPEGLRPAPPA*HPLRCR Trigger: CCGACATCGAAGTGGATGGCAAGCAGGTGGAGCTGG...TCTTAGTCCCTCTGGCCTTCCCCATATTACACACCAGCACTTTATATATTTTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002303.12 |
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| CDS-3UTR TCA 90 bp | TTTGACCTTTATTCATGTCCCCACCAAGTTAAGTCAAATAACAAGGCTACTACCGGTAGCCAAAGGCACTaGTCCTGTTTGCCATGTCCC | + |
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Preference number: 4 (lower is better) Translates to: FDLYSCPHQVKSNNKATTGSQRH*SCLPCP Trigger: GGGACATGGCAAACAGGATCAGTGCCTTTGGCTACC...GGTAGTAGCCTTGTTATTTGACTTAACTTGGTGGGGACATGAATAAAGGTCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002303.12 |
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| CDS-3UTR CAA 90 bp | GCAGGGAGGAAGGGCCTAGCAGCCCCCACTTGGGGCTGGGAAACTCATGCAGTCGCCAGCTCCACCTGCTaGCCATCCACTTCGATGTCG | + |
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Preference number: 5 (lower is better) Translates to: AGRKGLAAPTWGWETHAVASSTC*PSTSMS Trigger: CGACATCGAAGTGGATGGCAAGCAGGTGGAGCTGGC...GACTGCATGAGTTTCCCAGCCCCAAGTGGGGGCTGCTAGGCCCTTCCTCCCTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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| CDS-3UTR CAA 90 bp | GTCAGAGAATGGGACAGCCCCTCCGGCGCTTATTCTTCCGGACCTGTAGGCCCGGCCAGCTCCACCTGCTaGCCATCCACTTCGATGTCG | + |
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Preference number: 5 (lower is better) Translates to: VREWDSPSGAYSSGPVGPASSTC*PSTSMS Trigger: CGACATCGAAGTGGATGGCAAGCAGGTGGAGCTGGC...CGGGCCTACAGGTCCGGAAGAATAAGCGCCGGAGGGGCTGTCCCATTCTCTGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176347.6 |
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| CDS-3UTR CAA 90 bp | AAAGTGCTGGTGTGTAATATGGGGAAGGCCAGAGGGACTAAGAGCCCCACCCCCGCCAGCTCCACCTGCTaGCCATCCACTTCGATGTCG | + |
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Preference number: 5 (lower is better) Translates to: KVLVCNMGKARGTKSPTPASSTC*PSTSMS Trigger: CGACATCGAAGTGGATGGCAAGCAGGTGGAGCTGGC...GGGGGTGGGGCTCTTAGTCCCTCTGGCCTTCCCCATATTACACACCAGCACTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 |
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| CDS-3UTR CAA 90 bp | ATAAAGTGCTGGTGTGTAATATGGGGAAGGCCAGAGGGACTAAGAGCCCCACCCGCCAGCTCCACCTGCTaGCCATCCACTTCGATGTCG | + |
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Preference number: 5 (lower is better) Translates to: IKCWCVIWGRPEGLRAPPASSTC*PSTSMS Trigger: CGACATCGAAGTGGATGGCAAGCAGGTGGAGCTGGC...GGGTGGGGCTCTTAGTCCCTCTGGCCTTCCCCATATTACACACCAGCACTTTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 |
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| CDS-3UTR CAA 90 bp | ATAACAAGGCTACTACCCAAAGCAGAAACCCCAGTCCCTACCCTAGACTCCTCCGGCTCCTGTTTCATCTaGGCCAGCTCTCTCCTGGTA | + |
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Preference number: 5 (lower is better) Translates to: ITRLLPKAETPVPTLDSSGSCFI*ASSLLV Trigger: TACCAGGAGAGAGCTGGCCAAGATGAAACAGGAGCC...GGAGGAGTCTAGGGTAGGGACTGGGGTTTCTGCTTTGGGTAGTAGCCTTGTTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002303.12 |
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| CDS GCA 72 bp | CGAGCACTCGAGGTAGCCAAAGGCACTGATCCTGTTTaGCATGTCCCGGCCTTCCTCAGATCGAACCGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RALEVAKGTDPV*HVPAFLRSNRL Trigger: GAGCCGGTTCGATCTGAGGAAGGCCGGGACATGGCAAACAGGATCAGTGCCTTTGGCTACCTCGAGTGCTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002303.12 ENSMUST00000106787.8 ENSMUST00000196817.5 |
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