RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RHOB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054364

Ensembl transcript IDs: ENSMUST00000067384.6

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGGTGGTGTCCTTGGGGGCATGGGTCTCCCTTTCTCCCGGTTCGTaGGCGACCGGGCCAAGGAGGGGGAGCCACGCTGGCAAGGGCGTG +
Preference number: 1 (lower is better)
Translates to: LVVSLGAWVSLSPGS*ATGPRRGSHAGKGV
Trigger: CACGCCCTTGCCAGCGTGGCTCCCCCTCCTTGGCCCGGTCGCCCACGAACCGGGAGAAAGGGAGACCCATGCCCCCAAGGACACCACCAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 90 bp CCAGCCAGAGCCACCAGCAGATGTCAGGCAGTCTGGTGGTGTCCTTaGGGGCATGGGTCTCCCTTTCTCCCGGTTCGTGGGCGACCGGGC +
Preference number: 1 (lower is better)
Translates to: PARATSRCQAVWWCP*GHGSPFLPVRGRPG
Trigger: GCCCGGTCGCCCACGAACCGGGAGAAAGGGAGACCCATGCCCCCAAGGACACCACCAGACTGCCTGACATCTGCTGGTGGCTCTGGCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 90 bp AGCCACCAGCAGATGTCAGGCAGTCTGGTGGTGTCCTTGGGGGCATaGGTCTCCCTTTCTCCCGGTTCGTGGGCGACCGGGCCAAGGAGG +
Preference number: 1 (lower is better)
Translates to: SHQQMSGSLVVSLGA*VSLSPGSWATGPRR
Trigger: CCTCCTTGGCCCGGTCGCCCACGAACCGGGAGAAAGGGAGACCCATGCCCCCAAGGACACCACCAGACTGCCTGACATCTGCTGGTGGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR GCA 90 bp CAAATGTCTTCCCCAGGGTGTGGAAAGATGGCCAAGTCCAGTTCATaGTTGGATGGGTGGGCGCCTGACCCAGCCTGGGAAAGGAGCTGC +
Preference number: 1 (lower is better)
Translates to: QMSSPGCGKMAKSSS*LDGWAPDPAWERSC
Trigger: GCAGCTCCTTTCCCAGGCTGGGTCAGGCGCCCACCCATCCAAGCATGAACTGGACTTGGCCATCTTTCCACACCCTGGGGAAGACATTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 90 bp CCCAGCCCTCCCCTCCCGCCATTCCAGGGGTCTATGTTACAGACATaGAGCAACAGTAGTGGCTTGCTGGTTACAAGCAAACCTGCTGGG +
Preference number: 1 (lower is better)
Translates to: PSPPLPPFQGSMLQT*SNSSGLLVTSKPAG
Trigger: CCCAGCAGGTTTGCTTGTAACCAGCAAGCCACTACTGTTGCTCCATGTCTGTAACATAGACCCCTGGAATGGCGGGAGGGGAGGGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR GCA 90 bp ACACACACACAACCACACTTTGAGGCCTGGCTCTTTAGAAAAGGATaGTCAGGAACCCCTTGGCACTCAGCAGGGTGCCCAGGCCTGTGC +
Preference number: 1 (lower is better)
Translates to: THTQPHFEAWLFRKG*SGTPWHSAGCPGLC
Trigger: GCACAGGCCTGGGCACCCTGCTGAGTGCCAAGGGGTTCCTGAGCATCCTTTTCTAAAGAGCCAGGCCTCAAAGTGTGGTTGTGTGTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 90 bp CTTCCTCTCGACCCCAAGTCAGTTGCAAATGTCTTCCCCAGGGTGTaGAAAGATGGCCAAGTCCAGTTCATGCTTGGATGGGTGGGCGCC +
Preference number: 1 (lower is better)
Translates to: LPLDPKSVANVFPRV*KDGQVQFMLGWVGA
Trigger: GGCGCCCACCCATCCAAGCATGAACTGGACTTGGCCATCTTTCCACACCCTGGGGAAGACATTTGCAACTGACTTGGGGTCGAGAGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR TCA 90 bp GAGGTTACAGCATACAAGTGTGGTCAGAATGCTGTCTTATGCAAATaGCAAGTACACTGGGTGTCAAACAATGGGACAATTGTGCAAAGA +
Preference number: 1 (lower is better)
Translates to: EVTAYKCGQNAVLCK*QVHWVSNNGTIVQR
Trigger: TCTTTGCACAATTGTCCCATTGTTTGACACCCAGTGTACTTGTCATTTGCATAAGACAGCATTCTGACCACACTTGTATGCTGTAACCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR TCA 90 bp AAGCTTCAGCGTTTAAATAAATTCAGTAACAATAGTCTCTTGAGCTaGACAATGTTCATTTGTAGGACAGGCACAAAGTTCGCTTATGGC +
Preference number: 1 (lower is better)
Translates to: KLQRLNKFSNNSLLS*TMFICRTGTKFAYG
Trigger: GCCATAAGCGAACTTTGTGCCTGTCCTACAAATGAACATTGTTCAGCTCAAGAGACTATTGTTACTGAATTTATTTAAACGCTGAAGCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 90 bp GAATGCTGTCTTATGCAAATGACAAGTACACTGGGTGTCAAACAATaGGACAATTGTGCAAAGAACTCTTTCATCAACAACAAAAAGCTT +
Preference number: 1 (lower is better)
Translates to: ECCLMQMTSTLGVKQ*DNCAKNSFINNKKL
Trigger: AAGCTTTTTGTTGTTGATGAAAGAGTTCTTTGCACAATTGTCCCATTGTTTGACACCCAGTGTACTTGTCATTTGCATAAGACAGCATTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp ACCCCACTGCACACCCTGGATCCTCTGCCGGAGGTTCGCTGGGGGTTGGCCCAGGGGGCAGGAGTCGGGTaGGGTGTAGGGAGTCGTACA +
Preference number: 2 (lower is better)
Translates to: TPLHTLDPLPEVRWGLAQGAGVG*GVGSRT
Trigger: TGTACGACTCCCTACACCCCACCCGACTCCTGCCCC...CTGGGCCAACCCCCAGCGAACCTCCGGCAGAGGATCCAGGGTGTGCAGTGGGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CAA 90 bp ACCAGCCAGAGCCACCAGCAGATGTCAGGCAGTCTGGTGGTGTCCTaGGGGGCATGGGTCTCCCTTTCTCCCGGTTCGTGGGCGACCGGG +
Preference number: 2 (lower is better)
Translates to: TSQSHQQMSGSLVVS*GAWVSLSPGSWATG
Trigger: CCCGGTCGCCCACGAACCGGGAGAAAGGGAGACCCATGCCCCCAAGGACACCACCAGACTGCCTGACATCTGCTGGTGGCTCTGGCTGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp AAGATGGCCAAGTCCAGTTCATGCTTGGATGGGTGGGCGCCTGACCCAGCCTGGAACCAGAGGCGGGGGTaGGGCAGGAGTCGGGTGGGG +
Preference number: 2 (lower is better)
Translates to: KMAKSSSCLDGWAPDPAWNQRRG*GRSRVG
Trigger: CCCCACCCGACTCCTGCCCCACCCCCGCCTCTGGTT...CCAGGCTGGGTCAGGCGCCCACCCATCCAAGCATGAACTGGACTTGGCCATCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp ACCCCACTGCACACCCTGGATCCTCTGCCGGAGGTTCGCTGGGGGTTGGCCCAGGTCTGGTGGTGTCCTTaGGGGCATGGGTCTCCCTTT +
Preference number: 2 (lower is better)
Translates to: TPLHTLDPLPEVRWGLAQVWWCP*GHGSPF
Trigger: AAAGGGAGACCCATGCCCCCAAGGACACCACCAGAC...CTGGGCCAACCCCCAGCGAACCTCCGGCAGAGGATCCAGGGTGTGCAGTGGGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp AGGGGGAGCTCGGTGCCCACGCTAATTCTCAGCGTGACCAGCCAGAGCCACCAGTGTCAGGCAGTCTGGTaGTGTCCTTGGGGGCATGGG +
Preference number: 2 (lower is better)
Translates to: RGSSVPTLILSVTSQSHQCQAVW*CPWGHG
Trigger: CCCATGCCCCCAAGGACACCACCAGACTGCCTGACA...CTGGTGGCTCTGGCTGGTCACGCTGAGAATTAGCGTGGGCACCGAGCTCCCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp ACCCCACTGCACACCCTGGATCCTCTGCCGGAGGTTCGCTGGGGGTTGGCCCAGCCACACTTTGAGGCCTaGCTCTTTAGAAAAGGATGC +
Preference number: 2 (lower is better)
Translates to: TPLHTLDPLPEVRWGLAQPHFEA*LFRKGC
Trigger: GCATCCTTTTCTAAAGAGCCAGGCCTCAAAGTGTGG...CTGGGCCAACCCCCAGCGAACCTCCGGCAGAGGATCCAGGGTGTGCAGTGGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp ACCCCACTGCACACCCTGGATCCTCTGCCGGAGGTTCGCTGGGGGTTGGCCCAGACAGTAGTGGCTTGCTaGTTACAAGCAAACCTGCTG +
Preference number: 2 (lower is better)
Translates to: TPLHTLDPLPEVRWGLAQTVVAC*LQANLL
Trigger: CAGCAGGTTTGCTTGTAACCAGCAAGCCACTACTGT...CTGGGCCAACCCCCAGCGAACCTCCGGCAGAGGATCCAGGGTGTGCAGTGGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp ATGGCCAAGTCCAGTTCATGCTTGGATGGGTGGGCGCCTGACCCAGCCTGGGAAAGATGTCAGGCAGTCTaGTGGTGTCCTTGGGGGCAT +
Preference number: 2 (lower is better)
Translates to: MAKSSSCLDGWAPDPAWERCQAV*WCPWGH
Trigger: ATGCCCCCAAGGACACCACCAGACTGCCTGACATCT...TTCCCAGGCTGGGTCAGGCGCCCACCCATCCAAGCATGAACTGGACTTGGCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CAA 90 bp CCCAGGAGACACTGTCTGAGCTGCTTCCTCTCGACCCCAAGTCAGTaGCAAATGTCTTCCCCAGGGTGTGGAAAGATGGCCAAGTCCAGT +
Preference number: 2 (lower is better)
Translates to: PRRHCLSCFLSTPSQ*QMSSPGCGKMAKSS
Trigger: ACTGGACTTGGCCATCTTTCCACACCCTGGGGAAGACATTTGCAACTGACTTGGGGTCGAGAGGAAGCAGCTCAGACAGTGTCTCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR TCA 90 bp TTCATTTGTAGGACAGGCACAAAGTTCGCTTATGGCAAAAGTGACCCCACTGCAGGATGGGTGGGCGCCTaGCCCAGCCTGGGAAAGGAG +
Preference number: 2 (lower is better)
Translates to: FICRTGTKFAYGKSDPTAGWVGA*PSLGKE
Trigger: CTCCTTTCCCAGGCTGGGTCAGGCGCCCACCCATCC...TGCAGTGGGGTCACTTTTGCCATAAGCGAACTTTGTGCCTGTCCTACAAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR GCA 90 bp TTCATTTGTAGGACAGGCACAAAGTTCGCTTATGGCAAAAGTGACCCCACTGCAGCCTGGGAAAGGAGCTaGTCTGGGCCCTGGTCGCCC +
Preference number: 2 (lower is better)
Translates to: FICRTGTKFAYGKSDPTAAWERS*SGPWSP
Trigger: GGGCGACCAGGGCCCAGAGCAGCTCCTTTCCCAGGC...TGCAGTGGGGTCACTTTTGCCATAAGCGAACTTTGTGCCTGTCCTACAAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp CTCTGCACATGGAACGTACAGAAAATTTCACACAGAAGAGACTTGTCTTGTGGGGGAAAGGAGCTGCTCTaGGCCCTGGTCGCCCCACAC +
Preference number: 2 (lower is better)
Translates to: LCTWNVQKISHRRDLSCGGKELL*ALVAPH
Trigger: GTGTGGGGCGACCAGGGCCCAGAGCAGCTCCTTTCC...CCCACAAGACAAGTCTCTTCTGTGTGAAATTTTCTGTACGTTCCATGTGCAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR TCA 90 bp TTCATTTGTAGGACAGGCACAAAGTTCGCTTATGGCAAAAGTGACCCCACTGCACCAGGAGACACTGTCTaGGCTGCTTCCTCTCGACCC +
Preference number: 2 (lower is better)
Translates to: FICRTGTKFAYGKSDPTAPGDTV*AASSRP
Trigger: GGGTCGAGAGGAAGCAGCTCAGACAGTGTCTCCTGG...TGCAGTGGGGTCACTTTTGCCATAAGCGAACTTTGTGCCTGTCCTACAAATGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR GCA 90 bp TTCATTTGTAGGACAGGCACAAAGTTCGCTTATGGCAAAAGTGACCCCACTGCAGCCAAGTCCAGTTCATaGTTGGATGGGTGGGCGCCT +
Preference number: 2 (lower is better)
Translates to: FICRTGTKFAYGKSDPTAAKSSS*LDGWAP
Trigger: AGGCGCCCACCCATCCAAGCATGAACTGGACTTGGC...TGCAGTGGGGTCACTTTTGCCATAAGCGAACTTTGTGCCTGTCCTACAAATGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR TCA 90 bp TGCACATGGAACGTACAGAAAATTTCACACAGAAGAGACTTGTCTTGTGGGAGGCGCTTATGGCAAAAGTaGCCCCACTGCACACCCTGG +
Preference number: 2 (lower is better)
Translates to: CTWNVQKISHRRDLSCGRRLWQK*PHCTPW
Trigger: CCAGGGTGTGCAGTGGGGTCACTTTTGCCATAAGCG...CCTCCCACAAGACAAGTCTCTTCTGTGTGAAATTTTCTGTACGTTCCATGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp GTCAGAATGCTGTCTTATGCAAATGACAAGTACACTGGGTGTCAAACAATGGGATGCTCAGGAACCCCTTaGCACTCAGCAGGGTGCCCA +
Preference number: 2 (lower is better)
Translates to: VRMLSYANDKYTGCQTMGCSGTP*HSAGCP
Trigger: TGGGCACCCTGCTGAGTGCCAAGGGGTTCCTGAGCA...TCCCATTGTTTGACACCCAGTGTACTTGTCATTTGCATAAGACAGCATTCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR GCA 90 bp GTCAGAATGCTGTCTTATGCAAATGACAAGTACACTGGGTGTCAAACAATGGGAAGACACTGTCTGAGCTaGTTCCTCTCGACCCCAAGT +
Preference number: 2 (lower is better)
Translates to: VRMLSYANDKYTGCQTMGRHCLS*FLSTPS
Trigger: ACTTGGGGTCGAGAGGAAGCAGCTCAGACAGTGTCT...TCCCATTGTTTGACACCCAGTGTACTTGTCATTTGCATAAGACAGCATTCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CCA 90 bp TGCACATGGAACGTACAGAAAATTTCACACAGAAGAGACTTGTCTTGTGGGAGGTACAGCATACAAGTGTaGTCAGAATGCTGTCTTATG +
Preference number: 2 (lower is better)
Translates to: CTWNVQKISHRRDLSCGRYSIQV*SECCLM
Trigger: CATAAGACAGCATTCTGACCACACTTGTATGCTGTA...CCTCCCACAAGACAAGTCTCTTCTGTGTGAAATTTTCTGTACGTTCCATGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR GCA 72 bp GATGGGTGGGCGCCTGACCCAGCCTGGGAAAGGAGCTaGTCTGGGCCCTGGTCGCCCCACACACCACTAAAC +
Preference number: 3 (lower is better)
Translates to: DGWAPDPAWERS*SGPWSPHTPLN
Trigger: GTTTAGTGGTGTGTGGGGCGACCAGGGCCCAGAGCAGCTCCTTTCCCAGGCTGGGTCAGGCGCCCACCCATC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 72 bp CAGATGTCAGGCAGTCTGGTGGTGTCCTTGGGGGCATaGGTCTCCCTTTCTCCCGGTTCGTGGGCGACCGGG +
Preference number: 3 (lower is better)
Translates to: QMSGSLVVSLGA*VSLSPGSWATG
Trigger: CCCGGTCGCCCACGAACCGGGAGAAAGGGAGACCCATGCCCCCAAGGACACCACCAGACTGCCTGACATCTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 72 bp CCAGCCAGAGCCACCAGCAGATGTCAGGCAGTCTGGTaGTGTCCTTGGGGGCATGGGTCTCCCTTTCTCCCG +
Preference number: 3 (lower is better)
Translates to: PARATSRCQAVW*CPWGHGSPFLP
Trigger: CGGGAGAAAGGGAGACCCATGCCCCCAAGGACACCACCAGACTGCCTGACATCTGCTGGTGGCTCTGGCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 72 bp CCTGACCCAGCCTGGGAAAGGAGCTGCTCTGGGCCCTaGTCGCCCCACACACCACTAAACAATACCATTCTG +
Preference number: 3 (lower is better)
Translates to: PDPAWERSCSGP*SPHTPLNNTIL
Trigger: CAGAATGGTATTGTTTAGTGGTGTGTGGGGCGACCAGGGCCCAGAGCAGCTCCTTTCCCAGGCTGGGTCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR GCA 72 bp CAACCACACTTTGAGGCCTGGCTCTTTAGAAAAGGATaGTCAGGAACCCCTTGGCACTCAGCAGGGTGCCCA +
Preference number: 3 (lower is better)
Translates to: QPHFEAWLFRKG*SGTPWHSAGCP
Trigger: TGGGCACCCTGCTGAGTGCCAAGGGGTTCCTGAGCATCCTTTTCTAAAGAGCCAGGCCTCAAAGTGTGGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR GCA 72 bp GGTCTATGTTACAGACATGGAGCAACAGTAGTGGCTTaGTGGTTACAAGCAAACCTGCTGGGGGCGCAACCA +
Preference number: 3 (lower is better)
Translates to: GLCYRHGATVVA*WLQANLLGAQP
Trigger: TGGTTGCGCCCCCAGCAGGTTTGCTTGTAACCAGCAAGCCACTACTGTTGCTCCATGTCTGTAACATAGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 72 bp CCCCTCCCGCCATTCCAGGGGTCTATGTTACAGACATaGAGCAACAGTAGTGGCTTGCTGGTTACAAGCAAA +
Preference number: 3 (lower is better)
Translates to: PLPPFQGSMLQT*SNSSGLLVTSK
Trigger: TTTGCTTGTAACCAGCAAGCCACTACTGTTGCTCCATGTCTGTAACATAGACCCCTGGAATGGCGGGAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 72 bp GACCCCAAGTCAGTTGCAAATGTCTTCCCCAGGGTGTaGAAAGATGGCCAAGTCCAGTTCATGCTTGGATGG +
Preference number: 3 (lower is better)
Translates to: DPKSVANVFPRV*KDGQVQFMLGW
Trigger: CCATCCAAGCATGAACTGGACTTGGCCATCTTTCCACACCCTGGGGAAGACATTTGCAACTGACTTGGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR-3UTR CAA 90 bp CTCTGCACATGGAACGTACAGAAAATTTCACACAGAAGAGACTTGTCTTGTGGGGAGGTTCGCTGGGGGTaGGCCCAGGAGACACTGTCT +
Preference number: 3 (lower is better)
Translates to: LCTWNVQKISHRRDLSCGEVRWG*AQETLS
Trigger: AGACAGTGTCTCCTGGGCCAACCCCCAGCGAACCTC...CCCACAAGACAAGTCTCTTCTGTGTGAAATTTTCTGTACGTTCCATGTGCAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CCA 72 bp CTTATGCAAATGACAAGTACACTGGGTGTCAAACAATaGGACAATTGTGCAAAGAACTCTTTCATCAACAAC +
Preference number: 3 (lower is better)
Translates to: LMQMTSTLGVKQ*DNCAKNSFINN
Trigger: GTTGTTGATGAAAGAGTTCTTTGCACAATTGTCCCATTGTTTGACACCCAGTGTACTTGTCATTTGCATAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR TCA 72 bp CGTTTAAATAAATTCAGTAACAATAGTCTCTTGAGCTaGACAATGTTCATTTGTAGGACAGGCACAAAGTTC +
Preference number: 3 (lower is better)
Translates to: RLNKFSNNSLLS*TMFICRTGTKF
Trigger: GAACTTTGTGCCTGTCCTACAAATGAACATTGTTCAGCTCAAGAGACTATTGTTACTGAATTTATTTAAACG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR CCA 90 bp ACCCCACTGCACACCCTGGATCCTCTGCCGGAGGTTCGCTGGGGGTTGGCCCAGGGATGCGCACCGCCATaGCGCGGCCGTCATCCGTGC +
Preference number: 4 (lower is better)
Translates to: TPLHTLDPLPEVRWGLAQGCAPP*RGRHPC
Trigger: GCACGGATGACGGCCGCGCCATGGCGGTGCGCATCC...CTGGGCCAACCCCCAGCGAACCTCCGGCAGAGGATCCAGGGTGTGCAGTGGGGT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR CCA 90 bp TTTCTCCCGGTTCGTGGGCGACCGGGCCAAGGAGGGGGAGCCACGCTGGCAAGGGTCATCCGTGCGCACTaGCTCCTGCTTCATGCGGGC +
Preference number: 4 (lower is better)
Translates to: FLPVRGRPGQGGGATLARVIRAH*LLLHAG
Trigger: GCCCGCATGAAGCAGGAGCCAGTGCGCACGGATGAC...CCTTGCCAGCGTGGCTCCCCCTCCTTGGCCCGGTCGCCCACGAACCGGGAGAAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CAA 72 bp CACACCCTGGATCCTCTGCCGGAGGTTCGCTGGGGGTaGGCCCAGGAGACACTGTCTGAGCTGCTTCCTCTC +
Preference number: 4 (lower is better)
Translates to: HTLDPLPEVRWG*AQETLSELLPL
Trigger: GAGAGGAAGCAGCTCAGACAGTGTCTCCTGGGCCAACCCCCAGCGAACCTCCGGCAGAGGATCCAGGGTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR GCA 90 bp ATGGCCAAGTCCAGTTCATGCTTGGATGGGTGGGCGCCTGACCCAGCCTGGGAAGTGCGCACTGGCTCCTaGTTCATGCGGGCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: MAKSSSCLDGWAPDPAWEVRTGS*FMRASS
Trigger: GGAGCTGGCCCGCATGAAGCAGGAGCCAGTGCGCAC...TTCCCAGGCTGGGTCAGGCGCCCACCCATCCAAGCATGAACTGGACTTGGCCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR GCA 90 bp AGCGTGACCAGCCAGAGCCACCAGCAGATGTCAGGCAGTCTGGTGGTGTCCTTGCGCGGCCGTCATCCGTaGGCACTGGCTCCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: SVTSQSHQQMSGSLVVSLRGRHP*ALAPAS
Trigger: TGAAGCAGGAGCCAGTGCGCACGGATGACGGCCGCG...CAAGGACACCACCAGACTGCCTGACATCTGCTGGTGGCTCTGGCTGGTCACGCT
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR GCA 90 bp AGATGGCCAAGTCCAGTTCATGCTTGGATGGGTGGGCGCCTGACCCAGCCTGGGAGTCATAGGCTTGGATaGGCACCGCCATGGCGCGGC +
Preference number: 4 (lower is better)
Translates to: RWPSPVHAWMGGRLTQPGSHRLG*APPWRG
Trigger: GCCGCGCCATGGCGGTGCGCATCCAAGCCTATGACT...CCCAGGCTGGGTCAGGCGCCCACCCATCCAAGCATGAACTGGACTTGGCCATCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
3UTR CAA 72 bp CACTGTCTGAGCTGCTTCCTCTCGACCCCAAGTCAGTaGCAAATGTCTTCCCCAGGGTGTGGAAAGATGGCC +
Preference number: 4 (lower is better)
Translates to: HCLSCFLSTPSQ*QMSSPGCGKMA
Trigger: GGCCATCTTTCCACACCCTGGGGAAGACATTTGCAACTGACTTGGGGTCGAGAGGAAGCAGCTCAGACAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR GCA 90 bp TCTCTGCACATGGAACGTACAGAAAATTTCACACAGAAGAGACTTGTCTTGTGGTGCGGGCCAGCTCCGTaGGGACATGCTCGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: SLHMERTENFTQKRLVLWCGPAP*GHARRC
Trigger: GCAGCGACGAGCATGTCCGCACGGAGCTGGCCCGCA...CCACAAGACAAGTCTCTTCTGTGTGAAATTTTCTGTACGTTCCATGTGCAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR GCA 90 bp CTCTGCACATGGAACGTACAGAAAATTTCACACAGAAGAGACTTGTCTTGTGGGAGCTCCGTGCGGACATaGTCGTCGCTGCGCAGGTCT +
Preference number: 4 (lower is better)
Translates to: LCTWNVQKISHRRDLSCGSSVRT*SSLRRS
Trigger: AGACCTGCGCAGCGACGAGCATGTCCGCACGGAGCT...CCCACAAGACAAGTCTCTTCTGTGTGAAATTTTCTGTACGTTCCATGTGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR GCA 90 bp TCTCTGCACATGGAACGTACAGAAAATTTCACACAGAAGAGACTTGTCTTGTGGAGCGCCAGCTCCACCTaGTTGCCGTCCACCTCGATG +
Preference number: 4 (lower is better)
Translates to: SLHMERTENFTQKRLVLWSASST*LPSTSM
Trigger: CATCGAGGTGGACGGCAAGCAGGTGGAGCTGGCGCT...CCACAAGACAAGTCTCTTCTGTGTGAAATTTTCTGTACGTTCCATGTGCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR CCA 90 bp TGCACATGGAACGTACAGAAAATTTCACACAGAAGAGACTTGTCTTGTGGGAGGAGTTCTCGAACACGGTaGGCACGTACACCTCGGGGA +
Preference number: 4 (lower is better)
Translates to: CTWNVQKISHRRDLSCGRSSRTR*ARTPRG
Trigger: TCCCCGAGGTGTACGTGCCCACCGTGTTCGAGAACT...CCTCCCACAAGACAAGTCTCTTCTGTGTGAAATTTTCTGTACGTTCCATGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR TCA 90 bp CTCTGCACATGGAACGTACAGAAAATTTCACACAGAAGAGACTTGTCTTGTGGGGGAATTCGTCTTTACTaGACACGATCAGCAGGCACG +
Preference number: 4 (lower is better)
Translates to: LCTWNVQKISHRRDLSCGGIRLY*TRSAGT
Trigger: CGTGCCTGCTGATCGTGTTCAGTAAAGACGAATTCC...CCCACAAGACAAGTCTCTTCTGTGTGAAATTTTCTGTACGTTCCATGTGCAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS GCA 90 bp ATGCGCACCGCCATGGCGCGGCCGTCATCCGTGCGCACTGGCTCCTaGTTCATGCGGGCCAGCTCCGTGCGGACATGCTCGTCGCTGCGC +
Preference number: 5 (lower is better)
Translates to: MRTAMARPSSVRTGS*FMRASSVRTCSSLR
Trigger: GCGCAGCGACGAGCATGTCCGCACGGAGCTGGCCCGCATGAAGCAGGAGCCAGTGCGCACGGATGACGGCCGCGCCATGGCGGTGCGCAT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS GCA 90 bp CCGCCATGGCGCGGCCGTCATCCGTGCGCACTGGCTCCTGCTTCATaGGGGCCAGCTCCGTGCGGACATGCTCGTCGCTGCGCAGGTCTT +
Preference number: 5 (lower is better)
Translates to: PPWRGRHPCALAPAS*GPAPCGHARRCAGL
Trigger: AAGACCTGCGCAGCGACGAGCATGTCCGCACGGAGCTGGCCCGCATGAAGCAGGAGCCAGTGCGCACGGATGACGGCCGCGCCATGGCGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS CCA 90 bp GGCTTGGATGCGCACCGCCATGGCGCGGCCGTCATCCGTGCGCACTaGCTCCTGCTTCATGCGGGCCAGCTCCGTGCGGACATGCTCGTC +
Preference number: 5 (lower is better)
Translates to: GLDAHRHGAAVIRAH*LLLHAGQLRADMLV
Trigger: GACGAGCATGTCCGCACGGAGCTGGCCCGCATGAAGCAGGAGCCAGTGCGCACGGATGACGGCCGCGCCATGGCGGTGCGCATCCAAGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS GCA 90 bp AGTCATAGGCTTGGATGCGCACCGCCATGGCGCGGCCGTCATCCGTaGGCACTGGCTCCTGCTTCATGCGGGCCAGCTCCGTGCGGACAT +
Preference number: 5 (lower is better)
Translates to: SHRLGCAPPWRGRHP*ALAPASCGPAPCGH
Trigger: ATGTCCGCACGGAGCTGGCCCGCATGAAGCAGGAGCCAGTGCGCACGGATGACGGCCGCGCCATGGCGGTGCGCATCCAAGCCTATGACT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS CCA 90 bp TGGCCGAGCACTCGAGGTAGTCATAGGCTTGGATGCGCACCGCCATaGCGCGGCCGTCATCCGTGCGCACTGGCTCCTGCTTCATGCGGG +
Preference number: 5 (lower is better)
Translates to: WPSTRGSHRLGCAPP*RGRHPCALAPASCG
Trigger: CCCGCATGAAGCAGGAGCCAGTGCGCACGGATGACGGCCGCGCCATGGCGGTGCGCATCCAAGCCTATGACTACCTCGAGTGCTCGGCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR CAA 90 bp TTTCTCCCGGTTCGTGGGCGACCGGGCCAAGGAGGGGGAGCCACGCTGGCAAGGGAGGTAGTCATAGGCTaGGATGCGCACCGCCATGGC +
Preference number: 5 (lower is better)
Translates to: FLPVRGRPGQGGGATLAREVVIG*DAHRHG
Trigger: GCCATGGCGGTGCGCATCCAAGCCTATGACTACCTC...CCTTGCCAGCGTGGCTCCCCCTCCTTGGCCCGGTCGCCCACGAACCGGGAGAAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS-3UTR CAA 90 bp TGGGGGTTGGCCCAGGAGACACTGTCTGAGCTGCTTCCTCTCGACCCCAAGTCATCGCGCACGCCCTCCTaGGTCTTGGCCGAGCACTCG +
Preference number: 5 (lower is better)
Translates to: WGLAQETLSELLPLDPKSSRTPS*VLAEHS
Trigger: CGAGTGCTCGGCCAAGACCAAGGAGGGCGTGCGCGA...TGACTTGGGGTCGAGAGGAAGCAGCTCAGACAGTGTCTCCTGGGCCAACCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS GCA 72 bp GCCATGGCGCGGCCGTCATCCGTGCGCACTGGCTCCTaGTTCATGCGGGCCAGCTCCGTGCGGACATGCTCG +
Preference number: 6 (lower is better)
Translates to: AMARPSSVRTGS*FMRASSVRTCS
Trigger: CGAGCATGTCCGCACGGAGCTGGCCCGCATGAAGCAGGAGCCAGTGCGCACGGATGACGGCCGCGCCATGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS GCA 72 bp CTTGGATGCGCACCGCCATGGCGCGGCCGTCATCCGTaGGCACTGGCTCCTGCTTCATGCGGGCCAGCTCCG +
Preference number: 6 (lower is better)
Translates to: LGCAPPWRGRHP*ALAPASCGPAP
Trigger: CGGAGCTGGCCCGCATGAAGCAGGAGCCAGTGCGCACGGATGACGGCCGCGCCATGGCGGTGCGCATCCAAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS GCA 72 bp TCTTGGCCGAGCACTCGAGGTAGTCATAGGCTTGGATaGGCACCGCCATGGCGCGGCCGTCATCCGTGCGCA +
Preference number: 6 (lower is better)
Translates to: SWPSTRGSHRLG*APPWRGRHPCA
Trigger: TGCGCACGGATGACGGCCGCGCCATGGCGGTGCGCATCCAAGCCTATGACTACCTCGAGTGCTCGGCCAAGA
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6
CDS CCA 72 bp ACTCGAGGTAGTCATAGGCTTGGATGCGCACCGCCATaGCGCGGCCGTCATCCGTGCGCACTGGCTCCTGCT +
Preference number: 6 (lower is better)
Translates to: TRGSHRLGCAPP*RGRHPCALAPA
Trigger: AGCAGGAGCCAGTGCGCACGGATGACGGCCGCGCCATGGCGGTGCGCATCCAAGCCTATGACTACCTCGAGT
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067384.6