Pregenerated sensors for RHOA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000007815Ensembl transcript IDs: ENSMUST00000007959.14
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTGCAGTCCAGGTGAGAAAGGCTATGCCACCTCCAAAGTATAACTaGCTCAGGCGGGAAACCAAATTCCTACTTAGTCCAGTCTGGAAA | + |
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Preference number: 1 (lower is better) Translates to: PAVQVRKAMPPPKYN*LRRETKFLLSPVWK Trigger: TTTCCAGACTGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACTTTGGAGGTGGCATAGCCTTTCTCACCTGGACTGCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR CCA 90 bp | GGAGTGCAGAGAGGGCTGTTAGAGCAGTGTCAGAAGGACCCTGGCTaGTCAGACAGGTTGGACATTATTAATAATCGTGGTTGGCTTCTA | + |
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Preference number: 1 (lower is better) Translates to: GVQRGLLEQCQKDPG*SDRLDIINNRGWLL Trigger: TAGAAGCCAACCACGATTATTAATAATGTCCAACCTGTCTGACCAGCCAGGGTCCTTCTGACACTGCTCTAACAGCCCTCTCTGCACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR TCA 90 bp | GAAACCAAATTCCTACTTAGTCCAGTCTGGAAAGGGGTACTAGAATaGTATATAGGGCTGAATAAGGGATATGGCCATATTTTATCAGAG | + |
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Preference number: 1 (lower is better) Translates to: ETKFLLSPVWKGVLE*YIGLNKGYGHILSE Trigger: CTCTGATAAAATATGGCCATATCCCTTATTCAGCCCTATATATCATTCTAGTACCCCTTTCCAGACTGGACTAAGTAGGAATTTGGTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR-3UTR CCA 90 bp | GTCCAGGTGAGAAAGGCTATGCCACCTCCAAAGTATAACTGCCTCAGGCGGGAATCTGCAACAGCTGCGTaGACTTGGGCCTTTCTGGCT | + |
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Preference number: 2 (lower is better) Translates to: VQVRKAMPPPKYNCLRRESATAA*TWAFLA Trigger: AGCCAGAAAGGCCCAAGTCCACGCAGCTGTTGCAGA...TTCCCGCCTGAGGCAGTTATACTTTGGAGGTGGCATAGCCTTTCTCACCTGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR-3UTR CCA 90 bp | AGTATAACTGCCTCAGGCGGGAAACCAAATTCCTACTTAGTCCAGTCTGGAAAGGCGCCTGGTGTCAGGTaGAGTGCAGAGAGGGCTGTT | + |
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Preference number: 2 (lower is better) Translates to: SITASGGKPNSYLVQSGKAPGVR*SAERAV Trigger: AACAGCCCTCTCTGCACTCCACCTGACACCAGGCGC...CTTTCCAGACTGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR-3UTR CCA 90 bp | CTGAATACCCACCCCAGAGCTCTGGCAATGGAGTCTGTTAACAAGGAAAGCTCTCAGAAGGACCCTGGCTaGTCAGACAGGTTGGACATT | + |
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Preference number: 2 (lower is better) Translates to: LNTHPRALAMESVNKESSQKDPG*SDRLDI Trigger: AATGTCCAACCTGTCTGACCAGCCAGGGTCCTTCTG...AGAGCTTTCCTTGTTAACAGACTCCATTGCCAGAGCTCTGGGGTGGGTATTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR-3UTR CCA 90 bp | AGTATAACTGCCTCAGGCGGGAAACCAAATTCCTACTTAGTCCAGTCTGGAAAGACAGCTGCGTGGACTTaGGCCTTTCTGGCTGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: SITASGGKPNSYLVQSGKTAAWT*AFLAEQ Trigger: TTGCTCAGCCAGAAAGGCCCAAGTCCACGCAGCTGT...CTTTCCAGACTGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR-3UTR CCA 90 bp | AGTATAACTGCCTCAGGCGGGAAACCAAATTCCTACTTAGTCCAGTCTGGAAAGCCAGAGCTCTGGCAATaGAGTCTGTTAACAAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: SITASGGKPNSYLVQSGKPELWQ*SLLTRK Trigger: TTTCCTTGTTAACAGACTCCATTGCCAGAGCTCTGG...CTTTCCAGACTGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR-3UTR CAA 90 bp | GTCCAGGTGAGAAAGGCTATGCCACCTCCAAAGTATAACTGCCTCAGGCGGGAAGACTCACCAGAGTTCTaGCAGTTGACAGAAAGTAGG | + |
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Preference number: 3 (lower is better) Translates to: VQVRKAMPPPKYNCLRREDSPEF*QLTESR Trigger: CCTACTTTCTGTCAACTGCAAGAACTCTGGTGAGTC...TTCCCGCCTGAGGCAGTTATACTTTGGAGGTGGCATAGCCTTTCTCACCTGGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR-3UTR CAA 90 bp | GTCCAGGTGAGAAAGGCTATGCCACCTCCAAAGTATAACTGCCTCAGGCGGGAAGGCTGGTCAGACAGGTaGGACATTATTAATAATCGT | + |
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Preference number: 3 (lower is better) Translates to: VQVRKAMPPPKYNCLRREGWSDR*DIINNR Trigger: ACGATTATTAATAATGTCCAACCTGTCTGACCAGCC...TTCCCGCCTGAGGCAGTTATACTTTGGAGGTGGCATAGCCTTTCTCACCTGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR GCA 72 bp | CAGGTGAGAAAGGCTATGCCACCTCCAAAGTATAACTaGCTCAGGCGGGAAACCAAATTCCTACTTAGTCCA | + |
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Preference number: 3 (lower is better) Translates to: QVRKAMPPPKYN*LRRETKFLLSP Trigger: TGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACTTTGGAGGTGGCATAGCCTTTCTCACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| 3UTR CCA 72 bp | AGAGGGCTGTTAGAGCAGTGTCAGAAGGACCCTGGCTaGTCAGACAGGTTGGACATTATTAATAATCGTGGT | + |
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Preference number: 3 (lower is better) Translates to: RGLLEQCQKDPG*SDRLDIINNRG Trigger: ACCACGATTATTAATAATGTCCAACCTGTCTGACCAGCCAGGGTCCTTCTGACACTGCTCTAACAGCCCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| CDS-3UTR GCA 90 bp | AGTATAACTGCCTCAGGCGGGAAACCAAATTCCTACTTAGTCCAGTCTGGAAAGAACTCCCGTCTCGTGTaGTCGTCATTCCGAAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: SITASGGKPNSYLVQSGKNSRLV*SSFRRS Trigger: GGACCTTCGGAATGACGAGCACACGAGACGGGAGTT...CTTTCCAGACTGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| CDS-3UTR GCA 90 bp | CCTGGCTGGTCAGACAGGTTGGACATTATTAATAATCGTGGTTGGCTTCTAAATTTCCCACGTCTAGCTTaGAGAGCAGCTCTCGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: PGWSDRLDIINNRGWLLNFPRLA*RAALVA Trigger: GGCCACGAGAGCTGCTCTGCAAGCTAGACGTGGGAA...ATTTAGAAGCCAACCACGATTATTAATAATGTCCAACCTGTCTGACCAGCCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| CDS-3UTR CCA 90 bp | AGTATAACTGCCTCAGGCGGGAAACCAAATTCCTACTTAGTCCAGTCTGGAAAGGCTCCTGCTTCATTTTaGCCAACTCCCGTCTCGTGT | + |
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Preference number: 4 (lower is better) Translates to: SITASGGKPNSYLVQSGKAPASF*PTPVSC Trigger: ACACGAGACGGGAGTTGGCCAAAATGAAGCAGGAGC...CTTTCCAGACTGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| CDS-3UTR GCA 90 bp | AGTATAACTGCCTCAGGCGGGAAACCAAATTCCTACTTAGTCCAGTCTGGAAAGGGTTTTACCGGCTCCTaGTTCATTTTGGCCAACTCC | + |
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Preference number: 4 (lower is better) Translates to: SITASGGKPNSYLVQSGKGFTGS*FILANS Trigger: GGAGTTGGCCAAAATGAAGCAGGAGCCGGTAAAACC...CTTTCCAGACTGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| CDS-3UTR GCA 90 bp | AGTATAACTGCCTCAGGCGGGAAACCAAATTCCTACTTAGTCCAGTCTGGAAAGAGCGCCAATCCTGTTTaGCATATCTCTGCCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SITASGGKPNSYLVQSGKSANPV*HISAFF Trigger: GAAGAAGGCAGAGATATGGCAAACAGGATTGGCGCT...CTTTCCAGACTGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| CDS-3UTR GCA 90 bp | AGTATAACTGCCTCAGGCGGGAAACCAAATTCCTACTTAGTCCAGTCTGGAAAGTGTTTGCCATATCTCTaGCTTCTTCAGGTTTTACCG | + |
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Preference number: 4 (lower is better) Translates to: SITASGGKPNSYLVQSGKCLPYL*LLQVLP Trigger: CGGTAAAACCTGAAGAAGGCAGAGATATGGCAAACA...CTTTCCAGACTGGACTAAGTAGGAATTTGGTTTCCCGCCTGAGGCAGTTATACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| CDS-3UTR CAA 90 bp | CCTGGCTGGTCAGACAGGTTGGACATTATTAATAATCGTGGTTGGCTTCTAAATCTTCCCACGTCTAGCTaGCAGAGCAGCTCTCGTGGC | + |
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Preference number: 5 (lower is better) Translates to: PGWSDRLDIINNRGWLLNLPTSS*QSSSRG Trigger: GCCACGAGAGCTGCTCTGCAAGCTAGACGTGGGAAG...ATTTAGAAGCCAACCACGATTATTAATAATGTCCAACCTGTCTGACCAGCCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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| CDS-3UTR CAA 90 bp | CCTGGCTGGTCAGACAGGTTGGACATTATTAATAATCGTGGTTGGCTTCTAAATAAGCGCCAATCCTGTTaGCCATATCTCTGCCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: PGWSDRLDIINNRGWLLNKRQSC*PYLCLL Trigger: AAGAAGGCAGAGATATGGCAAACAGGATTGGCGCTT...ATTTAGAAGCCAACCACGATTATTAATAATGTCCAACCTGTCTGACCAGCCAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000007959.14 |
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