Pregenerated sensors for RHO (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030324Ensembl transcript IDs: ENSMUST00000032471.9, ENSMUST00000203877.2, ENSMUST00000204493.2, ENSMUST00000204711.3
Found 143 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGCTTAGGCTGGAGCCACCTGGCTGGTCTCCGTCTTGGAAGCGGTaGCAGAGGCGTCGTCATCTCCCAGTGGATTCTTGCCGCAGCACA | + |
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Preference number: 1 (lower is better) Translates to: RLRLEPPGWSPSWKR*QRRRHLPVDSCRST Trigger: TGTGCTGCGGCAAGAATCCACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAGCCTAAGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR CCA 90 bp | TCTCTGGCCAGGCTTAGGCTGGAGCCACCTGGCTGGTCTCCGTCTTaGAAGCGGTGGCAGAGGCGTCGTCATCTCCCAGTGGATTCTTGC | + |
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Preference number: 1 (lower is better) Translates to: SLARLRLEPPGWSPS*KRWQRRRHLPVDSC Trigger: GCAAGAATCCACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAGCCTAAGCCTGGCCAGAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR CCA 90 bp | TTTCAGCCACAGTCTCTGGCCAGGCTTAGGCTGGAGCCACCTGGCTaGTCTCCGTCTTGGAAGCGGTGGCAGAGGCGTCGTCATCTCCCA | + |
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Preference number: 1 (lower is better) Translates to: FQPQSLARLRLEPPG*SPSWKRWQRRRHLP Trigger: TGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAGCCTAAGCCTGGCCAGAGACTGTGGCTGAAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR CCA 90 bp | CAGGAGACTCCTACTTTCAGCCACAGTCTCTGGCCAGGCTTAGGCTaGAGCCACCTGGCTGGTCTCCGTCTTGGAAGCGGTGGCAGAGGC | + |
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Preference number: 1 (lower is better) Translates to: QETPTFSHSLWPGLG*SHLAGLRLGSGGRG Trigger: GCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAGCCTAAGCCTGGCCAGAGACTGTGGCTGAAAGTAGGAGTCTCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR CCA 90 bp | GGTCTCCGTCTTGGAAGCGGTGGCAGAGGCGTCGTCATCTCCCAGTaGATTCTTGCCGCAGCACAGCGTGGTGAGCATACAGTTCCGGAA | + |
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Preference number: 1 (lower is better) Translates to: GLRLGSGGRGVVISQ*ILAAAQRGEHTVPE Trigger: TTCCGGAACTGTATGCTCACCACGCTGTGCTGCGGCAAGAATCCACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR CCA 90 bp | ATGTTCCACAAAGGCTGCTTGCTTGGAGCCTGGCAGGTGACCCTGTaGGGACTCCAGGTCCCAGCTCATGGCAGGAGCTCTTCTGTCTAC | + |
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Preference number: 1 (lower is better) Translates to: MFHKGCLLGAWQVTL*GLQVPAHGRSSSVY Trigger: GTAGACAGAAGAGCTCCTGCCATGAGCTGGGACCTGGAGTCCCCACAGGGTCACCTGCCAGGCTCCAAGCAAGCAGCCTTTGTGGAACAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR CCA 90 bp | TGTGATTGGCTGAGTGTGTTGTATGTTCCACAAAGGCTGCTTGCTTaGAGCCTGGCAGGTGACCCTGTGGGGACTCCAGGTCCCAGCTCA | + |
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Preference number: 1 (lower is better) Translates to: CDWLSVLYVPQRLLA*SLAGDPVGTPGPSS Trigger: TGAGCTGGGACCTGGAGTCCCCACAGGGTCACCTGCCAGGCTCCAAGCAAGCAGCCTTTGTGGAACATACAACACACTCAGCCAATCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR TCA 90 bp | TGTCTGGCCCTGGGACTGCTACAGACACCTCTGAGGTTAGGCCTGTaGGTGAAGTCAACACAGAAGAGAGACACAAGGGGTCACAGGTCT | + |
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Preference number: 1 (lower is better) Translates to: CLALGLLQTPLRLGL*VKSTQKRDTRGHRS Trigger: AGACCTGTGACCCCTTGTGTCTCTCTTCTGTGTTGACTTCACTCACAGGCCTAACCTCAGAGGTGTCTGTAGCAGTCCCAGGGCCAGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR TCA 90 bp | CCAGGTCCCAGCTCATGGCAGGAGCTCTTCTGTCTACACTCACAGTaGCTGTCGAGGGAGGCTGACAAGAGCATTCTGGTTCTAAAGGGT | + |
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Preference number: 1 (lower is better) Translates to: PGPSSWQELFCLHSQ*LSREADKSILVLKG Trigger: ACCCTTTAGAACCAGAATGCTCTTGTCAGCCTCCCTCGACAGTCACTGTGAGTGTAGACAGAAGAGCTCCTGCCATGAGCTGGGACCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR CCA 90 bp | TCGCCCTTGCCCAACATAGCACCAAAGGGCTTTCATCCCAGACCCTaGCACCCTTTCCTTCTTGGAAGATGGTGTCACTCCACATCTGAG | + |
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Preference number: 1 (lower is better) Translates to: SPLPNIAPKGFHPRP*HPFLLGRWCHSTSE Trigger: CTCAGATGTGGAGTGACACCATCTTCCAAGAAGGAAAGGGTGCCAGGGTCTGGGATGAAAGCCCTTTGGTGCTATGTTGGGCAAGGGCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR CCA 90 bp | TGGAACCTCATCACTGATGGAGAGAGCAAGCAAATAACCCCTTGCTaGCACTCGCCCTTGCCCAACATAGCACCAAAGGGCTTTCATCCC | + |
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Preference number: 1 (lower is better) Translates to: WNLITDGESKQITPC*HSPLPNIAPKGFHP Trigger: GGGATGAAAGCCCTTTGGTGCTATGTTGGGCAAGGGCGAGTGCCAGCAAGGGGTTATTTGCTTGCTCTCTCCATCAGTGATGAGGTTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR TCA 90 bp | GGGCACCTCAGGTTACCTGGTAACCCAGGTGTCTCTTTATTGGGGTaGCAGCCCTGTCTGACCTGTGATTGGCTGAGTGTGTTGTATGTT | + |
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Preference number: 1 (lower is better) Translates to: GHLRLPGNPGVSLLG*QPCLTCDWLSVLYV Trigger: AACATACAACACACTCAGCCAATCACAGGTCAGACAGGGCTGTCACCCCAATAAAGAGACACCTGGGTTACCAGGTAACCTGAGGTGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR CCA 90 bp | TGGCATCAAGGACTCAGCTGCTCCCTGAAGGTGGGCATATTGGCATaGCTTCTAAAACTCCATACTGGCCTGGAACTGTTGCCACTTGGT | + |
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Preference number: 1 (lower is better) Translates to: WHQGLSCSLKVGILA*LLKLHTGLELLPLG Trigger: ACCAAGTGGCAACAGTTCCAGGCCAGTATGGAGTTTTAGAAGCCATGCCAATATGCCCACCTTCAGGGAGCAGCTGAGTCCTTGATGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR CCA 90 bp | GTAGATGACCGGGTTATAGATGGAAGAGCTCTTAGCAAAGAAAGCTaGCAGAGTCATGAAGATGGGGCCGAAGTTGGAGCCCTGGTGGGT | + |
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Preference number: 1 (lower is better) Translates to: VDDRVIDGRALSKES*QSHEDGAEVGALVG Trigger: ACCCACCAGGGCTCCAACTTCGGCCCCATCTTCATGACTCTGCCAGCTTTCTTTGCTAAGAGCTCTTCCATCTATAACCCGGTCATCTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR CCA 90 bp | CTTCTAAAACTCCATACTGGCCTGGAACTGTTGCCACTTGGTTGCTaGTGTAGAAGAGCAAATGTATCCAGAAGCCAAGAGGAAGGGCTG | + |
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Preference number: 1 (lower is better) Translates to: LLKLHTGLELLPLGC*CRRANVSRSQEEGL Trigger: CAGCCCTTCCTCTTGGCTTCTGGATACATTTGCTCTTCTACACCAGCAACCAAGTGGCAACAGTTCCAGGCCAGTATGGAGTTTTAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR TCA 90 bp | TATAGATTCCAGCCAGACATGACTGGATCTGCCAGGTTGGGCACCTaGGGACATCCATGTTCCCTTCCATTAATCCCTTCACTCATATAT | + |
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Preference number: 1 (lower is better) Translates to: YRFQPDMTGSARLGT*GHPCSLPLIPSLIY Trigger: ATATATGAGTGAAGGGATTAATGGAAGGGAACATGGATGTCCTCAGGTGCCCAACCTGGCAGATCCAGTCATGTCTGGCTGGAATCTATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR GCA 90 bp | CTGAGCCAAGGTCTAGAATACCAGAGTGTGCCAATGTCTTCAGCATaGCAGGAAGTAGGCTGGCCACATAAGTCCCTTAAATCTCATATA | + |
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Preference number: 1 (lower is better) Translates to: LSQGLEYQSVPMSSA*QEVGWPHKSLKSHI Trigger: TATATGAGATTTAAGGGACTTATGTGGCCAGCCTACTTCCTGGCATGCTGAAGACATTGGCACACTCTGGTATTCTAGACCTTGGCTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR CCA 90 bp | GTCAGCCTCTGTTTCAGCAATTGGGGTGAATTTCTTGTGACCAAATaGAACCTCATCACTGATGGAGAGAGCAAGCAAATAACCCCTTGC | + |
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Preference number: 1 (lower is better) Translates to: VSLCFSNWGEFLVTK*NLITDGESKQITPC Trigger: GCAAGGGGTTATTTGCTTGCTCTCTCCATCAGTGATGAGGTTCCATTTGGTCACAAGAAATTCACCCCAATTGCTGAAACAGAGGCTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR CCA 90 bp | GGGTTTCATGCCTATAAGCCAATAGTCAGCCTCTGTTTCAGCAATTaGGGTGAATTTCTTGTGACCAAATGGAACCTCATCACTGATGGA | + |
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Preference number: 1 (lower is better) Translates to: GFHAYKPIVSLCFSN*GEFLVTKWNLITDG Trigger: TCCATCAGTGATGAGGTTCCATTTGGTCACAAGAAATTCACCCCAATTGCTGAAACAGAGGCTGACTATTGGCTTATAGGCATGAAACCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR GCA 90 bp | GCCTGGCAGGTGACCCTGTGGGGACTCCAGGTCCCAGCTCATGGCAGGAGCTCTCCTCATCCCAACGGGTaGTGCTCCTGGTGGGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: AWQVTLWGLQVPAHGRSSPHPNG*CSWWGL Trigger: CAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGG...AGAGCTCCTGCCATGAGCTGGGACCTGGAGTCCCCACAGGGTCACCTGCCAGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR GCA 90 bp | CTGGCTGGTCTCCGTCTTGGAAGCGGTGGCAGAGGCGTCGTCATCTCCCAGTGGCCTCATCCCAACGGGTaGTGCTCCTGGTGGGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: LAGLRLGSGGRGVVISQWPHPNG*CSWWGL Trigger: CAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGG...CCACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR-3UTR TCA 90 bp | GCCTGGCAGGTGACCCTGTGGGGACTCCAGGTCCCAGCTCATGGCAGGAGCTCTGCCAGGTTGGGCACCTaGGGACATCCATGTTCCCTT | + |
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Preference number: 2 (lower is better) Translates to: AWQVTLWGLQVPAHGRSSARLGT*GHPCSL Trigger: AAGGGAACATGGATGTCCTCAGGTGCCCAACCTGGC...AGAGCTCCTGCCATGAGCTGGGACCTGGAGTCCCCACAGGGTCACCTGCCAGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR TCA 90 bp | CTGGAGCCACCTGGCTGGTCTCCGTCTTGGAAGCGGTGGCAGAGGCGTCGTCATTGGAGCCCTGGTGGGTaGAGATGTAGAAGGCCACAC | + |
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Preference number: 2 (lower is better) Translates to: LEPPGWSPSWKRWQRRRHWSPGG*RCRRPH Trigger: GTGTGGCCTTCTACATCTTCACCCACCAGGGCTCCA...ATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGCTGGTCTCCGTCTTGGAAGCGGTGGCAGAGGCGTCGTCATCTCCCAGTGGTGTGGCTGGGGTGTGTaGGGACAGGAGACTCCTACT | + |
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Preference number: 2 (lower is better) Translates to: LAGLRLGSGGRGVVISQWCGWGV*GQETPT Trigger: AGTAGGAGTCTCCTGTCCCCACACACCCCAGCCACA...CCACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR-3UTR CCA 90 bp | GCCTGGCAGGTGACCCTGTGGGGACTCCAGGTCCCAGCTCATGGCAGGAGCTCTCTGAGGGCCCAGCTGTaGTTCTATAGAGGAGGGATG | + |
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Preference number: 2 (lower is better) Translates to: AWQVTLWGLQVPAHGRSSLRAQL*FYRGGM Trigger: CATCCCTCCTCTATAGAACCACAGCTGGGCCCTCAG...AGAGCTCCTGCCATGAGCTGGGACCTGGAGTCCCCACAGGGTCACCTGCCAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR TCA 90 bp | CTGGAGCCACCTGGCTGGTCTCCGTCTTGGAAGCGGTGGCAGAGGCGTCGTCATAAGCTGGCAGAGTCATaGAGATGGGGCCGAAGTTGG | + |
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Preference number: 2 (lower is better) Translates to: LEPPGWSPSWKRWQRRRHKLAES*RWGRSW Trigger: CCAACTTCGGCCCCATCTTCATGACTCTGCCAGCTT...ATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR CAA 90 bp | GTCTTGGAAGCGGTGGCAGAGGCGTCGTCATCTCCCAGTGGATTCTaGCCGCAGCACAGCGTGGTGAGCATACAGTTCCGGAACTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: VLEAVAEASSSPSGF*PQHSVVSIQFRNCL Trigger: CAAGCAGTTCCGGAACTGTATGCTCACCACGCTGTGCTGCGGCAAGAATCCACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
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| 3UTR-3UTR TCA 90 bp | GATGGTCTTGGTGGATGGATGCCCTTTGTCAAGCTGTCCCCATTGAGTGGGGAGCTGAGGGAGCCTGCATaGCCTCATCCCAACGGGTGC | + |
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Preference number: 2 (lower is better) Translates to: DGLGGWMPFVKLSPLSGELREPA*PHPNGC Trigger: GCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAG...CTCCCCACTCAATGGGGACAGCTTGACAAAGGGCATCCATCCACCAAGACCATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 ENSMUST00000204493.2 |
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| 3UTR-3UTR TCA 90 bp | AGGGCCCAGCTGTGGTTCTATAGAGGAGGGATGCAGACTGAGGCTGCTCAATTCAGCCCTGCACAGGCCTaGAGGCCTGGGTCATTTGCA | + |
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Preference number: 2 (lower is better) Translates to: RAQLWFYRGGMQTEAAQFSPAQA*RPGSFA Trigger: TGCAAATGACCCAGGCCTTCAGGCCTGTGCAGGGCT...GAATTGAGCAGCCTCAGTCTGCATCCCTCCTCTATAGAACCACAGCTGGGCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR TCA 90 bp | CAGAAGCCAAGAGGAAGGGCTGGATCTCCACAGGCCAAGGAGGCTGAGAGACATGATTCCAGCCAGACATaGCTGGATCTGCCAGGTTGG | + |
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Preference number: 2 (lower is better) Translates to: QKPRGRAGSPQAKEAERHDSSQT*LDLPGW Trigger: CCAACCTGGCAGATCCAGTCATGTCTGGCTGGAATC...ATGTCTCTCAGCCTCCTTGGCCTGTGGAGATCCAGCCCTTCCTCTTGGCTTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR CCA 90 bp | GATGGTCTTGGTGGATGGATGCCCTTTGTCAAGCTGTCCCCATTGAGTGGGGAGTGTGGCTGGGGTGTGTaGGGACAGGAGACTCCTACT | + |
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Preference number: 2 (lower is better) Translates to: DGLGGWMPFVKLSPLSGECGWGV*GQETPT Trigger: AGTAGGAGTCTCCTGTCCCCACACACCCCAGCCACA...CTCCCCACTCAATGGGGACAGCTTGACAAAGGGCATCCATCCACCAAGACCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 ENSMUST00000204493.2 |
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| 3UTR-3UTR TCA 90 bp | GCTAAGAACTGGATCCATGAGCATCCTAAGGATGAGGCCTGGTCATGTCTTGCACTGAGGGAGCCTGCATaGCCTCATCCCAACGGGTGC | + |
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Preference number: 2 (lower is better) Translates to: AKNWIHEHPKDEAWSCLALREPA*PHPNGC Trigger: GCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAG...TGCAAGACATGACCAGGCCTCATCCTTAGGATGCTCATGGATCCAGTTCTTAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR CCA 90 bp | AAAGAAAAGAACACTGAGGGAGCCTGCATGACCTCATCCCAACGGGTGCTGCTCTGTGGCTGGGGTGTGTaGGGACAGGAGACTCCTACT | + |
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Preference number: 2 (lower is better) Translates to: KEKNTEGACMTSSQRVLLCGWGV*GQETPT Trigger: AGTAGGAGTCTCCTGTCCCCACACACCCCAGCCACA...GAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGTGTTCTTTTCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 ENSMUST00000204493.2 |
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| 3UTR-3UTR TCA 90 bp | AGGGCCCAGCTGTGGTTCTATAGAGGAGGGATGCAGACTGAGGCTGCTCAATTCGGGAAATACCTTATCTaGGTGCTTGGGCCCTGCCTA | + |
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Preference number: 2 (lower is better) Translates to: RAQLWFYRGGMQTEAAQFGKYLI*VLGPCL Trigger: TAGGCAGGGCCCAAGCACTCAGATAAGGTATTTCCC...GAATTGAGCAGCCTCAGTCTGCATCCCTCCTCTATAGAACCACAGCTGGGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR GCA 90 bp | AAAACAGCATATCCAACAAGGGAGCTAAGAACTGGATCCATGAGCATCCTAAGGGGAGGACCTAGGCCTTaGCGGAGACCCCTGGTCTCG | + |
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Preference number: 2 (lower is better) Translates to: KTAYPTRELRTGSMSILRGGPRP*RRPLVS Trigger: CGAGACCAGGGGTCTCCGGCAAGGCCTAGGTCCTCC...CCTTAGGATGCTCATGGATCCAGTTCTTAGCTCCCTTGTTGGATATGCTGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR CCA 90 bp | AGGGCCCAGCTGTGGTTCTATAGAGGAGGGATGCAGACTGAGGCTGCTCAATTCGCTGTCCCCATTGAGTaGGGAGCCTCATTTTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: RAQLWFYRGGMQTEAAQFAVPIE*GASFCF Trigger: AAAGCAAAATGAGGCTCCCCACTCAATGGGGACAGC...GAATTGAGCAGCCTCAGTCTGCATCCCTCCTCTATAGAACCACAGCTGGGCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR CCA 90 bp | AGGGCCCAGCTGTGGTTCTATAGAGGAGGGATGCAGACTGAGGCTGCTCAATTCACAGGCCTGAAGGCCTaGGTCATTTGCAAAAGCCTA | + |
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Preference number: 2 (lower is better) Translates to: RAQLWFYRGGMQTEAAQFTGLKA*VICKSL Trigger: TAGGCTTTTGCAAATGACCCAGGCCTTCAGGCCTGT...GAATTGAGCAGCCTCAGTCTGCATCCCTCCTCTATAGAACCACAGCTGGGCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR TCA 90 bp | AGCCGGGACACTTGTCATGTTCCTGATAGACAAGCTGAGGGAGGGGTACAGATCCAAAGAAAAGAACACTaGGGGAGCCTGCATGACCTC | + |
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Preference number: 2 (lower is better) Translates to: SRDTCHVPDRQAEGGVQIQRKEH*GSLHDL Trigger: GAGGTCATGCAGGCTCCCTCAGTGTTCTTTTCTTTG...GATCTGTACCCCTCCCTCAGCTTGTCTATCAGGAACATGACAAGTGTCCCGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000204493.2 |
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| 3UTR-3UTR TCA 90 bp | AATACAGAAATAAAGCCTCCACCAGCTAAGGTGTCTCTCACTTTCAGCTCAGAGCCTCAGGGCTGGTCCTaGTCCTGTTCCCCTGTTTGC | + |
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Preference number: 2 (lower is better) Translates to: NTEIKPPPAKVSLTFSSEPQGWS*SCSPVC Trigger: GCAAACAGGGGAACAGGATCAGGACCAGCCCTGAGG...CTCTGAGCTGAAAGTGAGAGACACCTTAGCTGGTGGAGGCTTTATTTCTGTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR CCA 90 bp | CATTTAGCCCTAAGCCGGGACACTTGTCATGTTCCTGATAGACAAGCTGAGGGAGCTGTCCCCATTGAGTaGGGAGCCTCATTTTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: HLALSRDTCHVPDRQAEGAVPIE*GASFCF Trigger: AAAGCAAAATGAGGCTCCCCACTCAATGGGGACAGC...TCCCTCAGCTTGTCTATCAGGAACATGACAAGTGTCCCGGCTTAGGGCTAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000204493.2 |
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| 3UTR-3UTR CCA 90 bp | GCTAAGAACTGGATCCATGAGCATCCTAAGGATGAGGCCTGGTCATGTCTTGCAATTCTATCAGGGCCCTaGATTTGGGAGATCCAACTG | + |
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Preference number: 2 (lower is better) Translates to: AKNWIHEHPKDEAWSCLAILSGP*IWEIQL Trigger: CAGTTGGATCTCCCAAATCCAGGGCCCTGATAGAAT...TGCAAGACATGACCAGGCCTCATCCTTAGGATGCTCATGGATCCAGTTCTTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR CCA 90 bp | AATACAGAAATAAAGCCTCCACCAGCTAAGGTGTCTCTCACTTTCAGCTCAGAGCAAATAACCCCTTGCTaGCACTCGCCCTTGCCCAAC | + |
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Preference number: 2 (lower is better) Translates to: NTEIKPPPAKVSLTFSSEQITPC*HSPLPN Trigger: GTTGGGCAAGGGCGAGTGCCAGCAAGGGGTTATTTG...CTCTGAGCTGAAAGTGAGAGACACCTTAGCTGGTGGAGGCTTTATTTCTGTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR GCA 90 bp | CTTGTCATGTTCCTGATAGACAAGCTGAGGGAGGGGTACAGATCCCGCTGGCCCTGGGGAGCCTCATTTTaGTTTCATGAATTCATTAAA | + |
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Preference number: 2 (lower is better) Translates to: LVMFLIDKLREGYRSRWPWGASF*FHEFIK Trigger: TTTAATGAATTCATGAAAGCAAAATGAGGCTCCCCA...GGGCCAGCGGGATCTGTACCCCTCCCTCAGCTTGTCTATCAGGAACATGACAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000204493.2 |
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| 3UTR-3UTR GCA 90 bp | AATACAGAAATAAAGCCTCCACCAGCTAAGGTGTCTCTCACTTTCAGCTCAGAGGTCTTGGTGGATGGATaGCCTTTGTCAAGCTGTCCC | + |
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Preference number: 2 (lower is better) Translates to: NTEIKPPPAKVSLTFSSEVLVDG*PLSSCP Trigger: GGGACAGCTTGACAAAGGGCATCCATCCACCAAGAC...CTCTGAGCTGAAAGTGAGAGACACCTTAGCTGGTGGAGGCTTTATTTCTGTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR CCA 90 bp | GTTCCTGTTGGCCTTAAAGCCAAAACCCTCTGGGATAAAGAAAAGACCAAAGGCTCTTCAGAACAAGGGTaGCATCAAGGACTCAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: VPVGLKAKTLWDKEKTKGSSEQG*HQGLSC Trigger: GCAGCTGAGTCCTTGATGCCACCCTTGTTCTGAAGA...GCCTTTGGTCTTTTCTTTATCCCAGAGGGTTTTGGCTTTAAGGCCAACAGGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| 3UTR-3UTR CCA 90 bp | GTTCCTGTTGGCCTTAAAGCCAAAACCCTCTGGGATAAAGAAAAGACCAAAGGCAACTCCATACTGGCCTaGAACTGTTGCCACTTGGTT | + |
|
Preference number: 2 (lower is better) Translates to: VPVGLKAKTLWDKEKTKGNSILA*NCCHLV Trigger: AACCAAGTGGCAACAGTTCCAGGCCAGTATGGAGTT...GCCTTTGGTCTTTTCTTTATCCCAGAGGGTTTTGGCTTTAAGGCCAACAGGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR-3UTR TCA 90 bp | GCTAAGAACTGGATCCATGAGCATCCTAAGGATGAGGCCTGGTCATGTCTTGCATCATCTCTCTGTCTTTaGAGCAGCCATATTCTATCA | + |
|
Preference number: 2 (lower is better) Translates to: AKNWIHEHPKDEAWSCLASSLCL*SSHILS Trigger: TGATAGAATATGGCTGCTTCAAAGACAGAGAGATGA...TGCAAGACATGACCAGGCCTCATCCTTAGGATGCTCATGGATCCAGTTCTTAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | AGGCTTAGGCTGGAGCCACCTGGCTGGTCTCCGTCTTaGAAGCGGTGGCAGAGGCGTCGTCATCTCCCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: RLRLEPPGWSPS*KRWQRRRHLPV Trigger: CACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAGCCTAAGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
||
| 3UTR CCA 72 bp | CTGGAGCCACCTGGCTGGTCTCCGTCTTGGAAGCGGTaGCAGAGGCGTCGTCATCTCCCAGTGGATTCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: LEPPGWSPSWKR*QRRRHLPVDSC Trigger: GCAAGAATCCACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
||
| 3UTR CCA 72 bp | CCTACTTTCAGCCACAGTCTCTGGCCAGGCTTAGGCTaGAGCCACCTGGCTGGTCTCCGTCTTGGAAGCGGT | + |
|
Preference number: 3 (lower is better) Translates to: PTFSHSLWPGLG*SHLAGLRLGSG Trigger: ACCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAGCCTAAGCCTGGCCAGAGACTGTGGCTGAAAGTAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
||
| 3UTR CCA 72 bp | CTTGGAAGCGGTGGCAGAGGCGTCGTCATCTCCCAGTaGATTCTTGCCGCAGCACAGCGTGGTGAGCATACA | + |
|
Preference number: 3 (lower is better) Translates to: LGSGGRGVVISQ*ILAAAQRGEHT Trigger: TGTATGCTCACCACGCTGTGCTGCGGCAAGAATCCACTGGGAGATGACGACGCCTCTGCCACCGCTTCCAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
||
| 3UTR TCA 72 bp | AAGGAGGCTGAGAGACATGAGGCAAGGTTTCCATACTaGAGGGAGGACCTAGGCCTTGCCGGAGACCCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: KEAERHEARFPY*REDLGLAGDPW Trigger: CCAGGGGTCTCCGGCAAGGCCTAGGTCCTCCCTTCAGTATGGAAACCTTGCCTCATGTCTCTCAGCCTCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR GCA 72 bp | GGCAAGGTTTCCATACTGAAGGGAGGACCTAGGCCTTaGCGGAGACCCCTGGTCTCGATGCTTTCTCAGTCC | + |
|
Preference number: 3 (lower is better) Translates to: GKVSILKGGPRP*RRPLVSMLSQS Trigger: GGACTGAGAAAGCATCGAGACCAGGGGTCTCCGGCAAGGCCTAGGTCCTCCCTTCAGTATGGAAACCTTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | TGTTGTATGTTCCACAAAGGCTGCTTGCTTGGAGCCTaGCAGGTGACCCTGTGGGGACTCCAGGTCCCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: CCMFHKGCLLGA*QVTLWGLQVPA Trigger: AGCTGGGACCTGGAGTCCCCACAGGGTCACCTGCCAGGCTCCAAGCAAGCAGCCTTTGTGGAACATACAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR GCA 72 bp | AGTGTAGGAGCTGAGCTTTTAATGCCTCTGTCCCCATaGAGAGTTGGGCCTGCTGAGGGCCCAGCTGTGGTT | + |
|
Preference number: 3 (lower is better) Translates to: SVGAELLMPLSP*RVGPAEGPAVV Trigger: AACCACAGCTGGGCCCTCAGCAGGCCCAACTCTGCATGGGGACAGAGGCATTAAAAGCTCAGCTCCTACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | CTGAGTGTGTTGTATGTTCCACAAAGGCTGCTTGCTTaGAGCCTGGCAGGTGACCCTGTGGGGACTCCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: LSVLYVPQRLLA*SLAGDPVGTPG Trigger: ACCTGGAGTCCCCACAGGGTCACCTGCCAGGCTCCAAGCAAGCAGCCTTTGTGGAACATACAACACACTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR-3UTR CAA 90 bp | GCAGCACAGCGTGGTGAGCATACAGTTCCGGAACTGCTTGTTCAACATGATGTAAAGATGGGGCCGAAGTaGGAGCCCTGGTGGGTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: AAQRGEHTVPELLVQHDVKMGPK*EPWWVK Trigger: CTTCACCCACCAGGGCTCCAACTTCGGCCCCATCTT...TACATCATGTTGAACAAGCAGTTCCGGAACTGTATGCTCACCACGCTGTGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
||
| 3UTR TCA 72 bp | GAGCAACAGACCACCACTGCCACCAAGTGTAGGAGCTaGGCTTTTAATGCCTCTGTCCCCATGCAGAGTTGG | + |
|
Preference number: 3 (lower is better) Translates to: EQQTTTATKCRS*AFNASVPMQSW Trigger: CCAACTCTGCATGGGGACAGAGGCATTAAAAGCTCAGCTCCTACACTTGGTGGCAGTGGTGGTCTGTTGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | CAGGGGTCAGGGAAGCGTCCCAGTTTCCATCCATTTTaGAAGAGCTTGAGAGCAACAGACCACCACTGCCAC | + |
|
Preference number: 3 (lower is better) Translates to: QGSGKRPSFHPF*KSLRATDHHCH Trigger: GTGGCAGTGGTGGTCTGTTGCTCTCAAGCTCTTTCAAAATGGATGGAAACTGGGACGCTTCCCTGACCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | CATCCCAGACCCTGGCACCCTTTCCTTCTTGGAAGATaGTGTCACTCCACATCTGAGGCTCCATCCCATTCT | + |
|
Preference number: 3 (lower is better) Translates to: HPRPWHPFLLGR*CHSTSEAPSHS Trigger: AGAATGGGATGGAGCCTCAGATGTGGAGTGACACCATCTTCCAAGAAGGAAAGGGTGCCAGGGTCTGGGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | ATCACTGATGGAGAGAGCAAGCAAATAACCCCTTGCTaGCACTCGCCCTTGCCCAACATAGCACCAAAGGGC | + |
|
Preference number: 3 (lower is better) Translates to: ITDGESKQITPC*HSPLPNIAPKG Trigger: GCCCTTTGGTGCTATGTTGGGCAAGGGCGAGTGCCAGCAAGGGGTTATTTGCTTGCTCTCTCCATCAGTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | GTCACCACGATTATAAAGGGAAGGAAAGCCCCTTTCTaGAAGGGTGTCTGGCCCTGGGACTGCTACAGACAC | + |
|
Preference number: 3 (lower is better) Translates to: VTTIIKGRKAPF*KGVWPWDCYRH Trigger: GTGTCTGTAGCAGTCCCAGGGCCAGACACCCTTCCAGAAAGGGGCTTTCCTTCCCTTTATAATCGTGGTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | TTAAAAACAAAGAAAAGAACACTGAGGGAGCCTGCATaGCCTCATCCCAACGGGTGCTGCTCCTGGTGGGGG | + |
|
Preference number: 3 (lower is better) Translates to: LKTKKRTLREPA*PHPNGCCSWWG Trigger: CCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGTGTTCTTTTCTTTGTTTTTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 ENSMUST00000204493.2 |
||
| 3UTR TCA 72 bp | CAGCCAGACATGACTGGATCTGCCAGGTTGGGCACCTaGGGACATCCATGTTCCCTTCCATTAATCCCTTCA | + |
|
Preference number: 3 (lower is better) Translates to: QPDMTGSARLGT*GHPCSLPLIPS Trigger: TGAAGGGATTAATGGAAGGGAACATGGATGTCCTCAGGTGCCCAACCTGGCAGATCCAGTCATGTCTGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | CTGGGACTGCTACAGACACCTCTGAGGTTAGGCCTGTaGGTGAAGTCAACACAGAAGAGAGACACAAGGGGT | + |
|
Preference number: 3 (lower is better) Translates to: LGLLQTPLRLGL*VKSTQKRDTRG Trigger: ACCCCTTGTGTCTCTCTTCTGTGTTGACTTCACTCACAGGCCTAACCTCAGAGGTGTCTGTAGCAGTCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | AGCTCATGGCAGGAGCTCTTCTGTCTACACTCACAGTaGCTGTCGAGGGAGGCTGACAAGAGCATTCTGGTT | + |
|
Preference number: 3 (lower is better) Translates to: SSWQELFCLHSQ*LSREADKSILV Trigger: AACCAGAATGCTCTTGTCAGCCTCCCTCGACAGTCACTGTGAGTGTAGACAGAAGAGCTCCTGCCATGAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | AGGTTACCTGGTAACCCAGGTGTCTCTTTATTGGGGTaGCAGCCCTGTCTGACCTGTGATTGGCTGAGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: RLPGNPGVSLLG*QPCLTCDWLSV Trigger: CACACTCAGCCAATCACAGGTCAGACAGGGCTGTCACCCCAATAAAGAGACACCTGGGTTACCAGGTAACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR GCA 72 bp | CTCATCACTGATGGAGAGAGCAAGCAAATAACCCCTTaGTGGCACTCGCCCTTGCCCAACATAGCACCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: LITDGESKQITP*WHSPLPNIAPK Trigger: CTTTGGTGCTATGTTGGGCAAGGGCGAGTGCCAGCAAGGGGTTATTTGCTTGCTCTCTCCATCAGTGATGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR-3UTR CAA 90 bp | GCTGACAAGAGCATTCTGGTTCTAAAGGGTTATTTTTCCCGGGCAGGAGAAGGCAGGTTGAGGATGGTCTaGGTGGATGGATGCCCTTTG | + |
|
Preference number: 3 (lower is better) Translates to: ADKSILVLKGYFSRAGEGRLRMV*VDGCPL Trigger: CAAAGGGCATCCATCCACCAAGACCATCCTCAACCT...GCCTTCTCCTGCCCGGGAAAAATAACCCTTTAGAACCAGAATGCTCTTGTCAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | GGAAGCGTCCCAGTTTCCATCCATTTTGAAAGAGCTTaGGAGCAACAGACCACCACTGCCACCAAGTGTAGG | + |
|
Preference number: 3 (lower is better) Translates to: GSVPVSIHFERA*EQQTTTATKCR Trigger: CCTACACTTGGTGGCAGTGGTGGTCTGTTGCTCTCAAGCTCTTTCAAAATGGATGGAAACTGGGACGCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | CGGGTTATAGATGGAAGAGCTCTTAGCAAAGAAAGCTaGCAGAGTCATGAAGATGGGGCCGAAGTTGGAGCC | + |
|
Preference number: 3 (lower is better) Translates to: RVIDGRALSKES*QSHEDGAEVGA Trigger: GGCTCCAACTTCGGCCCCATCTTCATGACTCTGCCAGCTTTCTTTGCTAAGAGCTCTTCCATCTATAACCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
||
| 3UTR CCA 72 bp | CTACTGAGGCTGAGGGAAATACCTTATCTGAGTGCTTaGGCCCTGCCTAATTCCCAAGCAGTCACTAACAAG | + |
|
Preference number: 3 (lower is better) Translates to: LLRLREIPYLSA*ALPNSQAVTNK Trigger: CTTGTTAGTGACTGCTTGGGAATTAGGCAGGGCCCAAGCACTCAGATAAGGTATTTCCCTCAGCCTCAGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | CTCCATACTGGCCTGGAACTGTTGCCACTTGGTTGCTaGTGTAGAAGAGCAAATGTATCCAGAAGCCAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: LHTGLELLPLGC*CRRANVSRSQE Trigger: CTCTTGGCTTCTGGATACATTTGCTCTTCTACACCAGCAACCAAGTGGCAACAGTTCCAGGCCAGTATGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | AGGTATGTAAAACTGCTTATAGATTCCAGCCAGACATaGCTGGATCTGCCAGGTTGGGCACCTGAGGACATC | + |
|
Preference number: 3 (lower is better) Translates to: RYVKLLIDSSQT*LDLPGWAPEDI Trigger: GATGTCCTCAGGTGCCCAACCTGGCAGATCCAGTCATGTCTGGCTGGAATCTATAAGCAGTTTTACATACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | AAGGATGAGGCCTGGTCATGTCTTGCACTGTGTTTCTaGACTCTTCAGAACAAGGGTGGCATCAAGGACTCA | + |
|
Preference number: 3 (lower is better) Translates to: KDEAWSCLALCF*TLQNKGGIKDS Trigger: TGAGTCCTTGATGCCACCCTTGTTCTGAAGAGTTCAGAAACACAGTGCAAGACATGACCAGGCCTCATCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | TCCACATCTGAGGCTCCATCCCATTCTTTTGCTAAGTaGCAGTATCCTAGTAAAGGCAGCTCTGAGCCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: STSEAPSHSFAK*QYPSKGSSEPR Trigger: CCTTGGCTCAGAGCTGCCTTTACTAGGATACTGTCACTTAGCAAAAGAATGGGATGGAGCCTCAGATGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | TGTCTCTTTATTGGGGTGACAGCCCTGTCTGACCTGTaGTTGGCTGAGTGTGTTGTATGTTCCACAAAGGCT | + |
|
Preference number: 3 (lower is better) Translates to: CLFIGVTALSDL*LAECVVCSTKA Trigger: AGCCTTTGTGGAACATACAACACACTCAGCCAATCACAGGTCAGACAGGGCTGTCACCCCAATAAAGAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR GCA 72 bp | GGTCTAGAATACCAGAGTGTGCCAATGTCTTCAGCATaGCAGGAAGTAGGCTGGCCACATAAGTCCCTTAAA | + |
|
Preference number: 3 (lower is better) Translates to: GLEYQSVPMSSA*QEVGWPHKSLK Trigger: TTTAAGGGACTTATGTGGCCAGCCTACTTCCTGGCATGCTGAAGACATTGGCACACTCTGGTATTCTAGACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | TATAGAGGAGGGATGCAGACTGAGGCTGCTCAATTCTaGTACCCCATAGTTCCTGTTGGCCTTAAAGCCAAA | + |
|
Preference number: 3 (lower is better) Translates to: YRGGMQTEAAQF*YPIVPVGLKAK Trigger: TTTGGCTTTAAGGCCAACAGGAACTATGGGGTACCAGAATTGAGCAGCCTCAGTCTGCATCCCTCCTCTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR-3UTR CAA 90 bp | GTTCCTGTTGGCCTTAAAGCCAAAACCCTCTGGGATAAAGAAAAGACCAAAGGCCTGAAGGTGGGCATATaGGCATGGCTTCTAAAACTC | + |
|
Preference number: 3 (lower is better) Translates to: VPVGLKAKTLWDKEKTKGLKVGI*AWLLKL Trigger: GAGTTTTAGAAGCCATGCCAATATGCCCACCTTCAG...GCCTTTGGTCTTTTCTTTATCCCAGAGGGTTTTGGCTTTAAGGCCAACAGGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR-3UTR CAA 90 bp | TTTCTTGTGACCAAATGGAACCTCATCACTGATGGAGAGAGCAAGCAAATAACCGGCACCCTTTCCTTCTaGGAAGATGGTGTCACTCCA | + |
|
Preference number: 3 (lower is better) Translates to: FLVTKWNLITDGESKQITGTLSF*EDGVTP Trigger: TGGAGTGACACCATCTTCCAAGAAGGAAAGGGTGCC...GGTTATTTGCTTGCTCTCTCCATCAGTGATGAGGTTCCATTTGGTCACAAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | AATCAGAAGATGACTCTCCATCTCAGGCCTGTTGATTaGCTTAGAGGTAAACAAGTGACTCAGCCCTGGCCA | + |
|
Preference number: 3 (lower is better) Translates to: NQKMTLHLRPVD*LRGKQVTQPWP Trigger: TGGCCAGGGCTGAGTCACTTGTTTACCTCTAAGTCAATCAACAGGCCTGAGATGGAGAGTCATCTTCTGATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR GCA 72 bp | AAACTCCATACTGGCCTGGAACTGTTGCCACTTGGTTaGTGGTGTAGAAGAGCAAATGTATCCAGAAGCCAA | + |
|
Preference number: 3 (lower is better) Translates to: KLHTGLELLPLG*WCRRANVSRSQ Trigger: TTGGCTTCTGGATACATTTGCTCTTCTACACCAGCAACCAAGTGGCAACAGTTCCAGGCCAGTATGGAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR-3UTR CAA 90 bp | ATGAGGCCTGGTCATGTCTTGCACTGTGTTTCTGAACTCTTCAGAACAAGGGTGCTCATCTCTCTGTCTTaGAAGCAGCCATATTCTATC | + |
|
Preference number: 3 (lower is better) Translates to: MRPGHVLHCVSELFRTRVLISLS*KQPYSI Trigger: GATAGAATATGGCTGCTTCAAAGACAGAGAGATGAG...CACCCTTGTTCTGAAGAGTTCAGAAACACAGTGCAAGACATGACCAGGCCTCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR-3UTR CAA 90 bp | TTTCTTGTGACCAAATGGAACCTCATCACTGATGGAGAGAGCAAGCAAATAACCAGGCCTGGTCATGTCTaGCACTGTGTTTCTGAACTC | + |
|
Preference number: 3 (lower is better) Translates to: FLVTKWNLITDGESKQITRPGHV*HCVSEL Trigger: GAGTTCAGAAACACAGTGCAAGACATGACCAGGCCT...GGTTATTTGCTTGCTCTCTCCATCAGTGATGAGGTTCCATTTGGTCACAAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | ATCTCAGGCCTGTTGATTGACTTAGAGGTAAACAAGTaGCTCAGCCCTGGCCAATCAAATGAATCTCTGTCT | + |
|
Preference number: 3 (lower is better) Translates to: ISGLLIDLEVNK*LSPGQSNESLS Trigger: AGACAGAGATTCATTTGATTGGCCAGGGCTGAGTCACTTGTTTACCTCTAAGTCAATCAACAGGCCTGAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | ATCTGGGGTCACCCTCAATGTTTCTCAGAGGTAAAGTaGCCGTGGGTGGAAACAAATACAGAAATAAAGCCT | + |
|
Preference number: 3 (lower is better) Translates to: IWGHPQCFSEVK*PWVETNTEIKP Trigger: AGGCTTTATTTCTGTATTTGTTTCCACCCACGGTCACTTTACCTCTGAGAAACATTGAGGGTGACCCCAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | GCCTATAAGCCAATAGTCAGCCTCTGTTTCAGCAATTaGGGTGAATTTCTTGTGACCAAATGGAACCTCATC | + |
|
Preference number: 3 (lower is better) Translates to: AYKPIVSLCFSN*GEFLVTKWNLI Trigger: GATGAGGTTCCATTTGGTCACAAGAAATTCACCCCAATTGCTGAAACAGAGGCTGACTATTGGCTTATAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR-3UTR CAA 90 bp | TTTCTTGTGACCAAATGGAACCTCATCACTGATGGAGAGAGCAAGCAAATAACCGGTCTAAGCTCCTCTTaGCAGATACAGAGGCTTATA | + |
|
Preference number: 3 (lower is better) Translates to: FLVTKWNLITDGESKQITGLSSS*QIQRLI Trigger: TATAAGCCTCTGTATCTGCAAAGAGGAGCTTAGACC...GGTTATTTGCTTGCTCTCTCCATCAGTGATGAGGTTCCATTTGGTCACAAGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | AGAGGTAAACAAGTGACTCAGCCCTGGCCAATCAAATaGATCTCTGTCTTAGACATGATGATTGGCTTAAGG | + |
|
Preference number: 3 (lower is better) Translates to: RGKQVTQPWPIK*ISVLDMMIGLR Trigger: CCTTAAGCCAATCATCATGTCTAAGACAGAGATTCATTTGATTGGCCAGGGCTGAGTCACTTGTTTACCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | TGTTTCAGCAATTGGGGTGAATTTCTTGTGACCAAATaGAACCTCATCACTGATGGAGAGAGCAAGCAAATA | + |
|
Preference number: 3 (lower is better) Translates to: CFSNWGEFLVTK*NLITDGESKQI Trigger: TATTTGCTTGCTCTCTCCATCAGTGATGAGGTTCCATTTGGTCACAAGAAATTCACCCCAATTGCTGAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | TTTTGGGGAACACATCCTACAGGCTCCTTAACTATGTaGAGTCAACTTTATCTTGTAGTGTGGGAACACATT | + |
|
Preference number: 3 (lower is better) Translates to: FWGTHPTGSLTM*SQLYLVVWEHI Trigger: AATGTGTTCCCACACTACAAGATAAAGTTGACTCCACATAGTTAAGGAGCCTGTAGGATGTGTTCCCCAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR TCA 72 bp | TCAACTTTATCTTGTAGTGTGGGAACACATTACAAATaGGGGAGCCCTATATCAGACATAGTGGTTGGCTTA | + |
|
Preference number: 3 (lower is better) Translates to: STLSCSVGTHYK*GSPISDIVVGL Trigger: TAAGCCAACCACTATGTCTGATATAGGGCTCCCTCATTTGTAATGTGTTCCCACACTACAAGATAAAGTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CCA 72 bp | TCCTTAACTATGTGGAGTCAACTTTATCTTGTAGTGTaGGAACACATTACAAATGAGGGAGCCCTATATCAG | + |
|
Preference number: 3 (lower is better) Translates to: SLTMWSQLYLVV*EHITNEGALYQ Trigger: CTGATATAGGGCTCCCTCATTTGTAATGTGTTCCCACACTACAAGATAAAGTTGACTCCACATAGTTAAGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR GCA 90 bp | TGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTGGTGGCTGACTCCTGCTaGTGGGCAGCCGCCTCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: CMTSSQRVLLLVGAVAGVVADSC*WAAASL Trigger: CAAGGAGGCGGCTGCCCAGCAGCAGGAGTCAGCCAC...CACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 ENSMUST00000204493.2 |
||
| CDS-3UTR TCA 90 bp | CTGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTCTTCTGAGTGGTGGCTaGCTCCTGCTGCTGGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LHDLIPTGAAPGGGCGWGLLSGG*LLLLGS Trigger: GCTGCCCAGCAGCAGGAGTCAGCCACCACTCAGAAG...ACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 ENSMUST00000204493.2 |
||
| CDS-3UTR CCA 90 bp | TGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTGGGCTGGTCTCCGTCTTaGAAGCGGTGGCAGAGGCGT | + |
|
Preference number: 4 (lower is better) Translates to: CMTSSQRVLLLVGAVAGVGWSPS*KRWQRR Trigger: ACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCC...CACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR CCA 90 bp | CTGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTCTGGAGCCACCTGGCTaGTCTCCGTCTTGGAAGCGG | + |
|
Preference number: 4 (lower is better) Translates to: LHDLIPTGAAPGGGCGWGLEPPG*SPSWKR Trigger: CCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAG...ACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR CCA 90 bp | ACTGAGGGAGCCTGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTCTGGAGCCACCTGGCTaGTCTCCGTCTTGGAAGCGG | + |
|
Preference number: 4 (lower is better) Translates to: TEGACMTSSQRVLLLVGALEPPG*SPSWKR Trigger: CCGCTTCCAAGACGGAGACCAGCCAGGTGGCTCCAG...AGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR TCA 90 bp | TGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTGATCCTCCGAAGACCATaGAGAGGTCAGCCACGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: CMTSSQRVLLLVGAVAGVILRRP*RGQPRP Trigger: TGGCCGTGGCTGACCTCTTCATGGTCTTCGGAGGAT...CACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR TCA 90 bp | TGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTGTGGAGCCCTGGTGGGTaGAGATGTAGAAGGCCACAC | + |
|
Preference number: 4 (lower is better) Translates to: CMTSSQRVLLLVGAVAGVWSPGG*RCRRPH Trigger: GTGTGGCCTTCTACATCTTCACCCACCAGGGCTCCA...CACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR TCA 90 bp | TGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTGCGCAGCACAGCGTGGTaGGCATACAGTTCCGGAACT | + |
|
Preference number: 4 (lower is better) Translates to: CMTSSQRVLLLVGAVAGVRSTAW*AYSSGT Trigger: AGTTCCGGAACTGTATGCTCACCACGCTGTGCTGCG...CACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR GCA 90 bp | TGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTGCCCCGAAGCGGAAGTTaGTCATCGGCTTGCAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: CMTSSQRVLLLVGAVAGVPRSGS*SSACRP Trigger: TGGTCTGCAAGCCGATGAGCAACTTCCGCTTCGGGG...CACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CCA 90 bp | GGGAGCCTGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCGTCGTCATCTCCCAGTaGATTCTTGCCGCAGCACAG | + |
|
Preference number: 4 (lower is better) Translates to: GSLHDLIPTGAAPGGGCGVVISQ*ILAAAQ Trigger: CTGTGCTGCGGCAAGAATCCACTGGGAGATGACGAC...GCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR TCA 90 bp | TGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTGAAGCTGGCAGAGTCATaGAGATGGGGCCGAAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: CMTSSQRVLLLVGAVAGVKLAES*RWGRSW Trigger: CCAACTTCGGCCCCATCTTCATGACTCTGCCAGCTT...CACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR TCA 90 bp | CTGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTGGGGTAAGCTGGCAGAGTCATaGAGATGGGGCCGAAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LHDLIPTGAAPGGGCGWGKLAES*RWGRSW Trigger: CCAACTTCGGCCCCATCTTCATGACTCTGCCAGCTT...ACCCCAGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| 3UTR CAA 72 bp | GCGGTGGCAGAGGCGTCGTCATCTCCCAGTGGATTCTaGCCGCAGCACAGCGTGGTGAGCATACAGTTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: AVAEASSSPSGF*PQHSVVSIQFR Trigger: CCGGAACTGTATGCTCACCACGCTGTGCTGCGGCAAGAATCCACTGGGAGATGACGACGCCTCTGCCACCGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204493.2 |
||
| CDS-3UTR TCA 90 bp | GTATCCAGAAGCCAAGAGGAAGGGCTGGATCTCCACAGGCCAAGGAGGCTGAGACTTCTGAGTGGTGGCTaGCTCCTGCTGCTGGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: VSRSQEEGLDLHRPRRLRLLSGG*LLLLGS Trigger: GCTGCCCAGCAGCAGGAGTCAGCCACCACTCAGAAG...TCTCAGCCTCCTTGGCCTGTGGAGATCCAGCCCTTCCTCTTGGCTTCTGGATAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR GCA 90 bp | ACTGAGGGAGCCTGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTCGCATGAACATTGCATaGCCTCAGGGATGTACCTGG | + |
|
Preference number: 4 (lower is better) Translates to: TEGACMTSSQRVLLLVGARMNIA*PQGCTW Trigger: CCAGGTACATCCCTGAGGGCATGCAATGTTCATGCG...AGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR GCA 90 bp | GGAGCCTGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCTCGCATGAACATTGCATaGCCTCAGGGATGTACCTCA | + |
|
Preference number: 4 (lower is better) Translates to: GACMTSSQRVLLLVGAVARMNIA*PQGCTS Trigger: TGAGGTACATCCCTGAGGGCATGCAATGTTCATGCG...AGCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203877.2 |
||
| CDS-3UTR TCA 90 bp | GATGGTCTTGGTGGATGGATGCCCTTTGTCAAGCTGTCCCCATTGAGTGGGGAGCTTCTGAGTGGTGGCTaGCTCCTGCTGCTGGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: DGLGGWMPFVKLSPLSGELLSGG*LLLLGS Trigger: GCTGCCCAGCAGCAGGAGTCAGCCACCACTCAGAAG...CTCCCCACTCAATGGGGACAGCTTGACAAAGGGCATCCATCCACCAAGACCATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 ENSMUST00000204493.2 |
||
| CDS-3UTR TCA 90 bp | TGTCCCCATGCAGAGTTGGGCCTGCTGAGGGCCCAGCTGTGGTTCTATAGAGGAACACCCATGATAGCGTaGTTCTCCCCGAAGCGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: CPHAELGLLRAQLWFYRGTPMIA*FSPKRK Trigger: CTTCCGCTTCGGGGAGAATCACGCTATCATGGGTGT...TCCTCTATAGAACCACAGCTGGGCCCTCAGCAGGCCCAACTCTGCATGGGGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CCA 90 bp | ACTGAGGGAGCCTGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTTTTCACCTCCAAGTGTaGCAAAGAAGCCCTCGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: TEGACMTSSQRVLLLVGAFHLQV*QRSPRD Trigger: ATCTCGAGGGCTTCTTTGCCACACTTGGAGGTGAAA...AGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CCA 90 bp | AAAGAAAAGAACACTGAGGGAGCCTGCATGACCTCATCCCAACGGGTGCTGCTCGGCTGGTCTCCGTCTTaGAAGCGGTGGCAGAGGCGT | + |
|
Preference number: 4 (lower is better) Translates to: KEKNTEGACMTSSQRVLLGWSPS*KRWQRR Trigger: ACGCCTCTGCCACCGCTTCCAAGACGGAGACCAGCC...GAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGTGTTCTTTTCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR CCA 90 bp | TGTCCCCATGCAGAGTTGGGCCTGCTGAGGGCCCAGCTGTGGTTCTATAGAGGACATGGAGAACTGCCATaGTTCCGCCAGGTAGTACTG | + |
|
Preference number: 4 (lower is better) Translates to: CPHAELGLLRAQLWFYRGHGELP*FRQVVL Trigger: CAGTACTACCTGGCGGAACCATGGCAGTTCTCCATG...TCCTCTATAGAACCACAGCTGGGCCCTCAGCAGGCCCAACTCTGCATGGGGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CCA 90 bp | TGGTGGATGGATGCCCTTTGTCAAGCTGTCCCCATTGAGTGGGGAGCCTCATTTCCTCAGGGATGTACCTaGACCAGCCAACGAGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: WWMDALCQAVPIEWGASFPQGCT*TSQRVG Trigger: CCCCACTCGTTGGCTGGTCCAGGTACATCCCTGAGG...AAATGAGGCTCCCCACTCAATGGGGACAGCTTGACAAAGGGCATCCATCCACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CCA 90 bp | TGGTGGATGGATGCCCTTTGTCAAGCTGTCCCCATTGAGTGGGGAGCCTCATTTCCGTCTTGGAAGCGGTaGCAGAGGCGTCGTCATCTC | + |
|
Preference number: 4 (lower is better) Translates to: WWMDALCQAVPIEWGASFPSWKR*QRRRHL Trigger: GAGATGACGACGCCTCTGCCACCGCTTCCAAGACGG...AAATGAGGCTCCCCACTCAATGGGGACAGCTTGACAAAGGGCATCCATCCACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR TCA 90 bp | AGCCGGGACACTTGTCATGTTCCTGATAGACAAGCTGAGGGAGGGGTACAGATCGGAAGCCCAGCACGATaGGCAGGAACATGTACGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SRDTCHVPDRQAEGGVQIGSPAR*AGTCTL Trigger: CAGCGTACATGTTCCTGCTCATCGTGCTGGGCTTCC...GATCTGTACCCCTCCCTCAGCTTGTCTATCAGGAACATGACAAGTGTCCCGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR TCA 90 bp | CTTGTCATGTTCCTGATAGACAAGCTGAGGGAGGGGTACAGATCCCGCTGGCCCGTAGTCAATCCCGCATaGACATTGCATGCCCTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LVMFLIDKLREGYRSRWPVVNPA*TLHALR Trigger: CCTGAGGGCATGCAATGTTCATGCGGGATTGACTAC...GGGCCAGCGGGATCTGTACCCCTCCCTCAGCTTGTCTATCAGGAACATGACAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR TCA 90 bp | ACACTTGTCATGTTCCTGATAGACAAGCTGAGGGAGGGGTACAGATCCCGCTGGTGGAGCCCTGGTGGGTaGAGATGTAGAAGGCCACAC | + |
|
Preference number: 4 (lower is better) Translates to: TLVMFLIDKLREGYRSRWWSPGG*RCRRPH Trigger: GTGTGGCCTTCTACATCTTCACCCACCAGGGCTCCA...CCAGCGGGATCTGTACCCCTCCCTCAGCTTGTCTATCAGGAACATGACAAGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR TCA 90 bp | TGGTGGATGGATGCCCTTTGTCAAGCTGTCCCCATTGAGTGGGGAGCCTCATTTCGCAGCACAGCGTGGTaGGCATACAGTTCCGGAACT | + |
|
Preference number: 4 (lower is better) Translates to: WWMDALCQAVPIEWGASFRSTAW*AYSSGT Trigger: AGTTCCGGAACTGTATGCTCACCACGCTGTGCTGCG...AAATGAGGCTCCCCACTCAATGGGGACAGCTTGACAAAGGGCATCCATCCACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR CCA 90 bp | GCTGACAAGAGCATTCTGGTTCTAAAGGGTTATTTTTCCCGGGCAGGAGAAGGCCCACGTAGCGCTCAATaGCCAGGACCACCAGGGACC | + |
|
Preference number: 4 (lower is better) Translates to: ADKSILVLKGYFSRAGEGPRSAQ*PGPPGT Trigger: GGTCCCTGGTGGTCCTGGCCATTGAGCGCTACGTGG...GCCTTCTCCTGCCCGGGAAAAATAACCCTTTAGAACCAGAATGCTCTTGTCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR TCA 90 bp | GCTAAGAACTGGATCCATGAGCATCCTAAGGATGAGGCCTGGTCATGTCTTGCATCCGCACCACGCCTGTaGCGTTGGAGAAGGGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: AKNWIHEHPKDEAWSCLASAPRL*RWRRAH Trigger: ATGTGCCCTTCTCCAACGTCACAGGCGTGGTGCGGA...TGCAAGACATGACCAGGCCTCATCCTTAGGATGCTCATGGATCCAGTTCTTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR GCA 90 bp | AAAGAAAAGAACACTGAGGGAGCCTGCATGACCTCATCCCAACGGGTGCTGCTCAGTTGCTCATCGGCTTaGAGACCACCACGTAGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: KEKNTEGACMTSSQRVLLSCSSA*RPPRSA Trigger: AGCGCTACGTGGTGGTCTGCAAGCCGATGAGCAACT...GAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGTGTTCTTTTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CAA 72 bp | GCTCTAGCCCTGCACAGGCCTGAAGGCCTGGGTCATTaGCAAAAGCCTACTGAGGCTGAGGGAAATACCTTA | + |
|
Preference number: 4 (lower is better) Translates to: ALALHRPEGLGH*QKPTEAEGNTL Trigger: TAAGGTATTTCCCTCAGCCTCAGTAGGCTTTTGCAAATGACCCAGGCCTTCAGGCCTGTGCAGGGCTAGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR GCA 90 bp | AGCCGGGACACTTGTCATGTTCCTGATAGACAAGCTGAGGGAGGGGTACAGATCCAGGAACATGTACGCTaGCAGCATGGAGAACTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SRDTCHVPDRQAEGGVQIQEHVR*QHGELP Trigger: TGGCAGTTCTCCATGCTGGCAGCGTACATGTTCCTG...GATCTGTACCCCTCCCTCAGCTTGTCTATCAGGAACATGACAAGTGTCCCGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CCA 90 bp | AACAAAGAAAAGAACACTGAGGGAGCCTGCATGACCTCATCCCAACGGGTGCTGTGTACGCTGCCAGCATaGAGAACTGCCATGGTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: NKEKNTEGACMTSSQRVLCTLPA*RTAMVP Trigger: CGGAACCATGGCAGTTCTCCATGCTGGCAGCGTACA...CAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGTGTTCTTTTCTTTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CCA 90 bp | TGGTGGATGGATGCCCTTTGTCAAGCTGTCCCCATTGAGTGGGGAGCCTCATTTAGGGCACATAAAAATTaGGGCCCTCTGTGCCGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: WWMDALCQAVPIEWGASFRAHKN*GPLCRS Trigger: TGAACGGCACAGAGGGCCCCAATTTTTATGTGCCCT...AAATGAGGCTCCCCACTCAATGGGGACAGCTTGACAAAGGGCATCCATCCACCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CCA 90 bp | AACAAAGAAAAGAACACTGAGGGAGCCTGCATGACCTCATCCCAACGGGTGCTGCGAGATTACAGCCTGTaGGCCCAAAGACGAAGTAGC | + |
|
Preference number: 4 (lower is better) Translates to: NKEKNTEGACMTSSQRVLRDYSL*AQRRSS Trigger: GCTACTTCGTCTTTGGGCCCACAGGCTGTAATCTCG...CAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGTGTTCTTTTCTTTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CAA 72 bp | TCAGGGCTGGTCCTGATCCTGTTCCCCTGTTTGCTTTaGGGGAACACATCCTACAGGCTCCTTAACTATGTG | + |
|
Preference number: 4 (lower is better) Translates to: SGLVLILFPCLL*GNTSYRLLNYV Trigger: CACATAGTTAAGGAGCCTGTAGGATGTGTTCCCCAAAAGCAAACAGGGGAACAGGATCAGGACCAGCCCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CCA 90 bp | AAAACAGCATATCCAACAAGGGAGCTAAGAACTGGATCCATGAGCATCCTAAGGGTCGTCATCTCCCAGTaGATTCTTGCCGCAGCACAG | + |
|
Preference number: 4 (lower is better) Translates to: KTAYPTRELRTGSMSILRVVISQ*ILAAAQ Trigger: CTGTGCTGCGGCAAGAATCCACTGGGAGATGACGAC...CCTTAGGATGCTCATGGATCCAGTTCTTAGCTCCCTTGTTGGATATGCTGTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CAA 72 bp | TCCATGAGCATCCTAAGGATGAGGCCTGGTCATGTCTaGCACTGTGTTTCTGAACTCTTCAGAACAAGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: SMSILRMRPGHV*HCVSELFRTRV Trigger: CACCCTTGTTCTGAAGAGTTCAGAAACACAGTGCAAGACATGACCAGGCCTCATCCTTAGGATGCTCATGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| 3UTR CAA 72 bp | GGTGTCACTCCACATCTGAGGCTCCATCCCATTCTTTaGCTAAGTGACAGTATCCTAGTAAAGGCAGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: GVTPHLRLHPIL*LSDSILVKAAL Trigger: CAGAGCTGCCTTTACTAGGATACTGTCACTTAGCAAAAGAATGGGATGGAGCCTCAGATGTGGAGTGACACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CAA 90 bp | TGTCCCCATGCAGAGTTGGGCCTGCTGAGGGCCCAGCTGTGGTTCTATAGAGGATCCCCGAAGCGGAAGTaGCTCATCGGCTTGCAGACC | + |
|
Preference number: 5 (lower is better) Translates to: CPHAELGLLRAQLWFYRGSPKRK*LIGLQT Trigger: GGTCTGCAAGCCGATGAGCAACTTCCGCTTCGGGGA...TCCTCTATAGAACCACAGCTGGGCCCTCAGCAGGCCCAACTCTGCATGGGGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CAA 90 bp | GGGAGCCTGCATGACCTCATCCCAACGGGTGCTGCTCCTGGTGGGGGCTGTGGCACAAAGGATTCGTTGTaGACCTCAGGCTTGAGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: GSLHDLIPTGAAPGGGCGTKDSL*TSGLSV Trigger: CACACTCAAGCCTGAGGTCAACAACGAATCCTTTGT...GCCACAGCCCCCACCAGGAGCAGCACCCGTTGGGATGAGGTCATGCAGGCTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS-3UTR CAA 90 bp | GTATCCAGAAGCCAAGAGGAAGGGCTGGATCTCCACAGGCCAAGGAGGCTGAGAAAGATGGGGCCGAAGTaGGAGCCCTGGTGGGTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: VSRSQEEGLDLHRPRRLRKMGPK*EPWWVK Trigger: CTTCACCCACCAGGGCTCCAACTTCGGCCCCATCTT...TCTCAGCCTCCTTGGCCTGTGGAGATCCAGCCCTTCCTCTTGGCTTCTGGATAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS TCA 90 bp | CAGGCCAACGCCATGATCCAGGTGAAGACCACACCCATGATAGCGTaGTTCTCCCCGAAGCGGAAGTTGCTCATCGGCTTGCAGACCACC | + |
|
Preference number: 5 (lower is better) Translates to: QANAMIQVKTTPMIA*FSPKRKLLIGLQTT Trigger: GGTGGTCTGCAAGCCGATGAGCAACTTCCGCTTCGGGGAGAATCACGCTATCATGGGTGTGGTCTTCACCTGGATCATGGCGTTGGCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CAA 90 bp | AACAAAGAAAAGAACACTGAGGGAGCCTGCATGACCTCATCCCAACGGGTGCTGAAGATGGGGCCGAAGTaGGAGCCCTGGTGGGTGAAG | + |
|
Preference number: 5 (lower is better) Translates to: NKEKNTEGACMTSSQRVLKMGPK*EPWWVK Trigger: CTTCACCCACCAGGGCTCCAACTTCGGCCCCATCTT...CAGCACCCGTTGGGATGAGGTCATGCAGGCTCCCTCAGTGTTCTTTTCTTTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS CCA 90 bp | TTTCACCTCCAAGTGTGGCAAAGAAGCCCTCGAGATTACAGCCTGTaGGCCCAAAGACGAAGTAGCCATGGAGTGATGTGTAGAGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: FHLQVWQRSPRDYSL*AQRRSSHGVMCRGW Trigger: CCACCCTCTACACATCACTCCATGGCTACTTCGTCTTTGGGCCCACAGGCTGTAATCTCGAGGGCTTCTTTGCCACACTTGGAGGTGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
||
| CDS-3UTR CAA 90 bp | GATGGTCTTGGTGGATGGATGCCCTTTGTCAAGCTGTCCCCATTGAGTGGGGAGACAAAGGATTCGTTGTaGACCTCAGGCTTGAGTGTG | + |
|
Preference number: 5 (lower is better) Translates to: DGLGGWMPFVKLSPLSGETKDSL*TSGLSV Trigger: CACACTCAAGCCTGAGGTCAACAACGAATCCTTTGT...CTCCCCACTCAATGGGGACAGCTTGACAAAGGGCATCCATCCACCAAGACCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000203877.2 |
||
| CDS CCA 72 bp | CATGCCCTCAGGGATGTACCTGGACCAGCCAACGAGTaGGGGAGCAGCACAGGCCAACGCCATGATCCAGGT | + |
|
Preference number: 6 (lower is better) Translates to: HALRDVPGPANE*GSSTGQRHDPG Trigger: ACCTGGATCATGGCGTTGGCCTGTGCTGCTCCCCCACTCGTTGGCTGGTCCAGGTACATCCCTGAGGGCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032471.9 ENSMUST00000204711.3 |
||
| CDS TCA 72 bp | GCCATGATCCAGGTGAAGACCACACCCATGATAGCGTaGTTCTCCCCGAAGCGGAAGTTGCTCATCGGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: AMIQVKTTPMIA*FSPKRKLLIGL Trigger: CAAGCCGATGAGCAACTTCCGCTTCGGGGAGAATCACGCTATCATGGGTGTGGTCTTCACCTGGATCATGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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| CDS CCA 72 bp | CAAGTGTGGCAAAGAAGCCCTCGAGATTACAGCCTGTaGGCCCAAAGACGAAGTAGCCATGGAGTGATGTGT | + |
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Preference number: 6 (lower is better) Translates to: QVWQRSPRDYSL*AQRRSSHGVMC Trigger: ACACATCACTCCATGGCTACTTCGTCTTTGGGCCCACAGGCTGTAATCTCGAGGGCTTCTTTGCCACACTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032471.9 |
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