Pregenerated sensors for RHNO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048668Ensembl transcript IDs: ENSMUST00000057421.15, ENSMUST00000112151.2, ENSMUST00000112152.8, ENSMUST00000155573.3, ENSMUST00000223237.2
Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACCCTAGAAACCGAACTCCGACTCTGGCTAAGTGGTCTTCCTATTaGTGTTCGTCCCCTTTCATCCTTTCAAACCAGGATGACTTGCGA | + |
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Preference number: 1 (lower is better) Translates to: NPRNRTPTLAKWSSY*CSSPFILSNQDDLR Trigger: TCGCAAGTCATCCTGGTTTGAAAGGATGAAAGGGGACGAACAGCAATAGGAAGACCACTTAGCCAGAGTCGGAGTTCGGTTTCTAGGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| 3UTR-3UTR TCA 90 bp | CAACGGCTGGGTTCTCTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACCTTTCAAACCAGGATaGCTTGCGAAACCTCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: QRLGSLKTRQPFIYKRCEPFKPG*LAKPPH Trigger: GTGGGGAGGTTTCGCAAGTCATCCTGGTTTGAAAGG...TTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAGAGAACCCAGCCGTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| 3UTR-3UTR TCA 90 bp | AAAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACCTTTCAAACCAGGATaGCTTGCGAAACCTCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: KIPTVHDTKFNGSWCEAEPFKPG*LAKPPH Trigger: GTGGGGAGGTTTCGCAAGTCATCCTGGTTTGAAAGG...TTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| 3UTR-3UTR TCA 90 bp | GGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTACCTTTCAAACCAGGATaGCTTGCGAAACCTCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: GSHLFTNAVNSTRNVRGLPFKPG*LAKPPH Trigger: GTGGGGAGGTTTCGCAAGTCATCCTGGTTTGAAAGG...TAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| 3UTR-3UTR GCA 90 bp | GGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTACAAACCAGGATGACTTaGGAAACCTCCCCACAGCAG | + |
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Preference number: 2 (lower is better) Translates to: GSHLFTNAVNSTRNVRGLQTRMT*ETSPQQ Trigger: CTGCTGTGGGGAGGTTTCGCAAGTCATCCTGGTTTG...TAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| 3UTR-3UTR TCA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGCCTTTCAAACCAGGATaGCTTGCGAAACCTCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQPFKPG*LAKPPH Trigger: GTGGGGAGGTTTCGCAAGTCATCCTGGTTTGAAAGG...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| 3UTR-3UTR GCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAAACCAGGATGACTTaGGAAACCTCCCCACAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRQTRMT*ETSPQQ Trigger: CTGCTGTGGGGAGGTTTCGCAAGTCATCCTGGTTTG...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| 3UTR TCA 72 bp | TTGCTGTTCGTCCCCTTTCATCCTTTCAAACCAGGATaGCTTGCGAAACCTCCCCACAGCAGCTCCGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: LLFVPFHPFKPG*LAKPPHSSSGK Trigger: CTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCATCCTGGTTTGAAAGGATGAAAGGGGACGAACAGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| 3UTR GCA 72 bp | GTTCGTCCCCTTTCATCCTTTCAAACCAGGATGACTTaGGAAACCTCCCCACAGCAGCTCCGGGAAGAACTG | + |
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Preference number: 3 (lower is better) Translates to: VRPLSSFQTRMT*ETSPQQLREEL Trigger: CAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCATCCTGGTTTGAAAGGATGAAAGGGGACGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| 3UTR TCA 72 bp | CACAAACCTAAAGTACTCATCCGTCCCCTAGCTCTCTaGCCCCATCGTATTCACCAACACAGGCCTGGCTTG | + |
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Preference number: 3 (lower is better) Translates to: HKPKVLIRPLAL*PHRIHQHRPGL Trigger: CAAGCCAGGCCTGTGTTGGTGAATACGATGGGGTCAGAGAGCTAGGGGACGGATGAGTACTTTAGGTTTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
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| 3UTR GCA 72 bp | AACCGAACTCCGACTCTGGCTAAGTGGTCTTCCTATTaGTGTTCGTCCCCTTTCATCCTTTCAAACCAGGAT | + |
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Preference number: 3 (lower is better) Translates to: NRTPTLAKWSSY*CSSPFILSNQD Trigger: ATCCTGGTTTGAAAGGATGAAAGGGGACGAACAGCAATAGGAAGACCACTTAGCCAGAGTCGGAGTTCGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | ACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTCCTCCTCAGGGGTGTCCTTaGCCAGAACAGGCCCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: TCETSPQQLREELKLCGPPQGCP*PEQAPA Trigger: AGCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGG...AGGACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | ATGACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTGGGTGGGTCCTTTTCTaGGTTCTGGGGCTGCACTCG | + |
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Preference number: 4 (lower is better) Translates to: MTCETSPQQLREELKLCGGWVLF*VLGLHS Trigger: CGAGTGCAGCCCCAGAACTCAGAAAAGGACCCACCC...ACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | ATGACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTGGTAGATCTCCGAGTTaGGCGCCTTGCCTGGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: MTCETSPQQLREELKLCGGRSPS*APCLVS Trigger: CGAGACCAGGCAAGGCGCCCAACTCGGAGATCTACC...ACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | ACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTCCTTTTGGGGCCCTCCAGTaGCTGTTGGTGAAACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: TCETSPQQLREELKLCGPFGALQ*LLVKQQ Trigger: CTGCTGTTTCACCAACAGCCACTGGAGGGCCCCAAA...AGGACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | ACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTCCTGATCAATGGGCTTGCTaGGCACCTGAACAGTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: TCETSPQQLREELKLCGPDQWAC*APEQCG Trigger: CCCACACTGTTCAGGTGCCCAGCAAGCCCATTGATC...AGGACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | ATGACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTTCCAGTGGCTGTTGGTaGAACAGCAGCTGGGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: MTCETSPQQLREELKLCGSSGCW*NSSWAF Trigger: GAAAGCCCAGCTGCTGTTTCACCAACAGCCACTGGA...ACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | ACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTCCTTCTATCAAACTGGGGTaGCACCCAGGAAGTGACGGT | + |
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Preference number: 4 (lower is better) Translates to: TCETSPQQLREELKLCGPSIKLG*HPGSDG Trigger: ACCGTCACTTCCTGGGTGTCACCCCAGTTTGATAGA...AGGACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | ATGACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTGTGAGGTACATGCACTaGCAGTTCTCCACAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: MTCETSPQQLREELKLCGVRYMH*QFSTAL Trigger: CAGAGCTGTGGAGAACTGTCAGTGCATGTACCTCAC...ACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR GCA 90 bp | ACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTCCTCTTTCTGGGACTGTCTaGGTCTCTTTTTGGGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: TCETSPQQLREELKLCGPLSGTV*VSFWEA Trigger: TGCCTCCCAAAAAGAGACGCAGACAGTCCCAGAAAG...AGGACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | AAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACAACAGGCCCCGGCTCTaGGCTGCTGGGAGTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: KYQQFMTLNSTVPGARRNNRPRL*AAGSPR Trigger: CCTGGGACTCCCAGCAGCCCAGAGCCGGGGCCTGTT...GTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | CAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACCCTAGAGGGTGGGTCCTTTTCTaGGTTCTGGGGCTGCACTCG | + |
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Preference number: 4 (lower is better) Translates to: QQFMTLNSTVPGARRNPRGWVLF*VLGLHS Trigger: CGAGTGCAGCCCCAGAACTCAGAAAAGGACCCACCC...TCTAGGGTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | AAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACCCTCAGGGGTGTCCTTaGCCAGAACAGGCCCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: KYQQFMTLNSTVPGARRNPQGCP*PEQAPA Trigger: AGCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGG...GTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR GCA 90 bp | ACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTCCTTCCCAGGGCCAAGGATaGAGCTTGGAAAACTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: TCETSPQQLREELKLCGPSQGQG*SLENCF Trigger: AAAACAGTTTTCCAAGCTGCATCCTTGGCCCTGGGA...AGGACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | CAACGGCTGGGTTCTCTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAAAACAGGCCCCGGCTCTaGGCTGCTGGGAGTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QRLGSLKTRQPFIYKRCENRPRL*AAGSPR Trigger: CCTGGGACTCCCAGCAGCCCAGAGCCGGGGCCTGTT...TTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAGAGAACCCAGCCGTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | ATGACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTATCTTCACAAGGAACTaGCTTCCATCCAGCTTCCCC | + |
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Preference number: 4 (lower is better) Translates to: MTCETSPQQLREELKLCGIFTRN*LPSSFP Trigger: GGGGAAGCTGGATGGAAGCCAGTTCCTTGTGAAGAT...ACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | AAAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACCTCAGGGGTGTCCTTaGCCAGAACAGGCCCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: KIPTVHDTKFNGSWCEAEPQGCP*PEQAPA Trigger: AGCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGG...TTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | CAACGGCTGGGTTCTCTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACCTCAGGGGTGTCCTTaGCCAGAACAGGCCCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: QRLGSLKTRQPFIYKRCEPQGCP*PEQAPA Trigger: AGCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGG...TTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAGAGAACCCAGCCGTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR GCA 90 bp | ATGACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTTCCCAGGGCCAAGGATaGAGCTTGGAAAACTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: MTCETSPQQLREELKLCGSQGQG*SLENCF Trigger: AAAACAGTTTTCCAAGCTGCATCCTTGGCCCTGGGA...ACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR GCA 90 bp | AAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGGCCCCGGCTCTGGGCTaGTGGGAGTCCCAGGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: KTRQPFIYKRCEQYKKRQAPALG*WESQGQ Trigger: TTGGCCCTGGGACTCCCAGCAGCCCAGAGCCGGGGC...CTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | ATGACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTGTTTTCCTTCTGGTCTaGGGAAATGGGATCGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: MTCETSPQQLREELKLCGVFLLV*GNGIVS Trigger: AGAGACGATCCCATTTCCCCAGACCAGAAGGAAAAC...ACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | GGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGGCCCCGGCTCTaGGCTGCTGGGAGTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: GSHLFTNAVNSTRNVRGLNRPRL*AAGSPR Trigger: CCTGGGACTCCCAGCAGCCCAGAGCCGGGGCCTGTT...TAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR GCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTGCCCCGGCTCTGGGCTaGTGGGAGTCCCAGGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRAPALG*WESQGQ Trigger: TTGGCCCTGGGACTCCCAGCAGCCCAGAGCCGGGGC...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR GCA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGGCCCCGGCTCTGGGCTaGTGGGAGTCCCAGGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQAPALG*WESQGQ Trigger: TTGGCCCTGGGACTCCCAGCAGCCCAGAGCCGGGGC...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | CAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACCCTAGATTTGGGGCCCTCCAGTaGCTGTTGGTGAAACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: QQFMTLNSTVPGARRNPRFGALQ*LLVKQQ Trigger: CTGCTGTTTCACCAACAGCCACTGGAGGGCCCCAAA...TCTAGGGTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | AAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACGGTAGATCTCCGAGTTaGGCGCCTTGCCTGGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: KYQQFMTLNSTVPGARRNGRSPS*APCLVS Trigger: CGAGACCAGGCAAGGCGCCCAACTCGGAGATCTACC...GTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | ATGACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTGCCAAGGATGCAGCTTaGAAAACTGTTTTCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: MTCETSPQQLREELKLCGAKDAA*KTVFLL Trigger: CAGAAGGAAAACAGTTTTCCAAGCTGCATCCTTGGC...ACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | AAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACGAAGTGACGGTGCTCTaGTCAATGGGCTTGCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: KYQQFMTLNSTVPGARRNEVTVL*SMGLLG Trigger: GCCCAGCAAGCCCATTGATCAGAGCACCGTCACTTC...GTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | AAAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAAGGGTGGGTCCTTTTCTaGGTTCTGGGGCTGCACTCG | + |
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Preference number: 4 (lower is better) Translates to: KIPTVHDTKFNGSWCEAEGWVLF*VLGLHS Trigger: CGAGTGCAGCCCCAGAACTCAGAAAAGGACCCACCC...TTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR TCA 90 bp | AAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACTCCAGTGGCTGTTGGTaGAACAGCAGCTGGGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: KYQQFMTLNSTVPGARRNSSGCW*NSSWAF Trigger: GAAAGCCCAGCTGCTGTTTCACCAACAGCCACTGGA...GTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR TCA 90 bp | AATAAGCATAGACCTTTTATAGATGGGCACGAGGCTGCATTACTGACAACGGCTGAAGTGACGGTGCTCTaGTCAATGGGCTTGCTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: NKHRPFIDGHEAALLTTAEVTVL*SMGLLG Trigger: GCCCAGCAAGCCCATTGATCAGAGCACCGTCACTTC...AGCCGTTGTCAGTAATGCAGCCTCGTGCCCATCTATAAAAGGTCTATGCTTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR GCA 90 bp | CAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACCCTAGACTTTCTGGGACTGTCTaGGTCTCTTTTTGGGAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: QQFMTLNSTVPGARRNPRLSGTV*VSFWEA Trigger: TGCCTCCCAAAAAGAGACGCAGACAGTCCCAGAAAG...TCTAGGGTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACTTTGGGGCCCTCCAGTaGCTGTTGGTGAAACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: KYQQFMTLNSTVPGARRNFGALQ*LLVKQQ Trigger: CTGCTGTTTCACCAACAGCCACTGGAGGGCCCCAAA...GTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AAGCATAGACCTTTTATAGATGGGCACGAGGCTGCATTACTGACAACGGCTGGGGCACTAAAGGCCTTCTaGGTGGGTCCTTTTCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: KHRPFIDGHEAALLTTAGALKAF*VGPFLS Trigger: ACTCAGAAAAGGACCCACCCAGAAGGCCTTTAGTGC...CCCAGCCGTTGTCAGTAATGCAGCCTCGTGCCCATCTATAAAAGGTCTATGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR CCA 90 bp | CAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACCCTAGAGCACTAAAGGCCTTCTaGGTGGGTCCTTTTCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: QQFMTLNSTVPGARRNPRALKAF*VGPFLS Trigger: ACTCAGAAAAGGACCCACCCAGAAGGCCTTTAGTGC...TCTAGGGTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| 3UTR CAA 72 bp | ATCGTATTCACCAACACAGGCCTGGCTTGGGACCCTTaGAGCCAAGGCTGTCAACCATTAAAAACCAGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: IVFTNTGLAWDP*SQGCQPLKTRA Trigger: AGCTCTGGTTTTTAATGGTTGACAGCCTTGGCTCAAAGGGTCCCAAGCCAGGCCTGTGTTGGTGAATACGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR TCA 90 bp | CAACGGCTGGGTTCTCTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAATCCAGTGGCTGTTGGTaGAACAGCAGCTGGGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: QRLGSLKTRQPFIYKRCESSGCW*NSSWAF Trigger: GAAAGCCCAGCTGCTGTTTCACCAACAGCCACTGGA...TTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAGAGAACCCAGCCGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR TCA 90 bp | GCTGCATTACTGACAACGGCTGGGTTCTCTAAAAACTCGGCAGCCATTTATTTATCCAGTGGCTGTTGGTaGAACAGCAGCTGGGCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: AALLTTAGFSKNSAAIYLSSGCW*NSSWAF Trigger: GAAAGCCCAGCTGCTGTTTCACCAACAGCCACTGGA...TAAATAAATGGCTGCCGAGTTTTTAGAGAACCCAGCCGTTGTCAGTAATGCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR TCA 90 bp | AAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACTCTATCAAACTGGGGTaGCACCCAGGAAGTGACGGT | + |
|
Preference number: 4 (lower is better) Translates to: KYQQFMTLNSTVPGARRNSIKLG*HPGSDG Trigger: ACCGTCACTTCCTGGGTGTCACCCCAGTTTGATAGA...GTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AAAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAAGATCAATGGGCTTGCTaGGCACCTGAACAGTGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: KIPTVHDTKFNGSWCEAEDQWAC*APEQCG Trigger: CCCACACTGTTCAGGTGCCCAGCAAGCCCATTGATC...TTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AAAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACGGTGCTCTGATCAATaGGCTTGCTGGGCACCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: KIPTVHDTKFNGSWCEAERCSDQ*ACWAPE Trigger: TTCAGGTGCCCAGCAAGCCCATTGATCAGAGCACCG...TTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | CAACGGCTGGGTTCTCTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACGGTGCTCTGATCAATaGGCTTGCTGGGCACCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: QRLGSLKTRQPFIYKRCERCSDQ*ACWAPE Trigger: TTCAGGTGCCCAGCAAGCCCATTGATCAGAGCACCG...TTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAGAGAACCCAGCCGTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | TTGGGACCCTTTGAGCCAAGGCTGTCAACCATTAAAAACCAGAGCTCTCTCTTGAGTTCTCCACAGCTCTaGGGACTGAACAATGGCACT | + |
|
Preference number: 4 (lower is better) Translates to: LGPFEPRLSTIKNQSSLLSSPQL*GLNNGT Trigger: AGTGCCATTGTTCAGTCCCCAGAGCTGTGGAGAACT...CAAGAGAGAGCTCTGGTTTTTAATGGTTGACAGCCTTGGCTCAAAGGGTCCCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR CCA 90 bp | CAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACCCTAGAGTTTTCCTTCTGGTCTaGGGAAATGGGATCGTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: QQFMTLNSTVPGARRNPRVFLLV*GNGIVS Trigger: AGAGACGATCCCATTTCCCCAGACCAGAAGGAAAAC...TCTAGGGTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR TCA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGGGCTTGCTGGGCACCTaGACAGTGTGGGTAATGGGC | + |
|
Preference number: 4 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQGLLGT*TVWVMG Trigger: GCCCATTACCCACACTGTTCAGGTGCCCAGCAAGCC...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR TCA 90 bp | AAAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAATCTATCAAACTGGGGTaGCACCCAGGAAGTGACGGT | + |
|
Preference number: 4 (lower is better) Translates to: KIPTVHDTKFNGSWCEAESIKLG*HPGSDG Trigger: ACCGTCACTTCCTGGGTGTCACCCCAGTTTGATAGA...TTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | GGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAGATCAATGGGCTTGCTaGGCACCTGAACAGTGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: GSHLFTNAVNSTRNVRGLDQWAC*APEQCG Trigger: CCCACACTGTTCAGGTGCCCAGCAAGCCCATTGATC...TAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AGGCAGAAGACTAATAAGCATAGACCTTTTATAGATGGGCACGAGGCTGCATTAGATCAATGGGCTTGCTaGGCACCTGAACAGTGTGGG | + |
|
Preference number: 4 (lower is better) Translates to: RQKTNKHRPFIDGHEAALDQWAC*APEQCG Trigger: CCCACACTGTTCAGGTGCCCAGCAAGCCCATTGATC...TAATGCAGCCTCGTGCCCATCTATAAAAGGTCTATGCTTATTAGTCTTCTGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR CCA 90 bp | AGGCAGAAGACTAATAAGCATAGACCTTTTATAGATGGGCACGAGGCTGCATTACGGTGCTCTGATCAATaGGCTTGCTGGGCACCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: RQKTNKHRPFIDGHEAALRCSDQ*ACWAPE Trigger: TTCAGGTGCCCAGCAAGCCCATTGATCAGAGCACCG...TAATGCAGCCTCGTGCCCATCTATAAAAGGTCTATGCTTATTAGTCTTCTGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR CCA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGGGTAGATCTCCGAGTTaGGCGCCTTGCCTGGTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQGRSPS*APCLVS Trigger: CGAGACCAGGCAAGGCGCCCAACTCGGAGATCTACC...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTGGTAGATCTCCGAGTTaGGCGCCTTGCCTGGTCTCG | + |
|
Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRGRSPS*APCLVS Trigger: CGAGACCAGGCAAGGCGCCCAACTCGGAGATCTACC...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACGCACTAAAGGCCTTCTaGGTGGGTCCTTTTCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: KYQQFMTLNSTVPGARRNALKAF*VGPFLS Trigger: ACTCAGAAAAGGACCCACCCAGAAGGCCTTTAGTGC...GTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAACATCTTCACAAGGAACTaGCTTCCATCCAGCTTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: KYQQFMTLNSTVPGARRNIFTRN*LPSSFP Trigger: GGGGAAGCTGGATGGAAGCCAGTTCCTTGTGAAGAT...GTTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR TCA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGGAAGTGACGGTGCTCTaGTCAATGGGCTTGCTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQEVTVL*SMGLLG Trigger: GCCCAGCAAGCCCATTGATCAGAGCACCGTCACTTC...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR TCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTGAAGTGACGGTGCTCTaGTCAATGGGCTTGCTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKREVTVL*SMGLLG Trigger: GCCCAGCAAGCCCATTGATCAGAGCACCGTCACTTC...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR TCA 90 bp | CACTGTAAACACATCTCAAAACACAAACCTAAAGTACTCATCCGTCCCCTAGCTGTGAGGTACATGCACTaGCAGTTCTCCACAGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: HCKHISKHKPKVLIRPLAVRYMH*QFSTAL Trigger: CAGAGCTGTGGAGAACTGTCAGTGCATGTACCTCAC...AGCTAGGGGACGGATGAGTACTTTAGGTTTGTGTTTTGAGATGTGTTTACAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR CCA 90 bp | CAACGGCTGGGTTCTCTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAAATTCATAGTGGTGTTTaGGGCCCTCCAGTGGCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: QRLGSLKTRQPFIYKRCEIHSGV*GPPVAV Trigger: AACAGCCACTGGAGGGCCCCAAACACCACTATGAAT...TTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAGAGAACCCAGCCGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | CAACGGCTGGGTTCTCTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAAGCACTAAAGGCCTTCTaGGTGGGTCCTTTTCTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: QRLGSLKTRQPFIYKRCEALKAF*VGPFLS Trigger: ACTCAGAAAAGGACCCACCCAGAAGGCCTTTAGTGC...TTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAGAGAACCCAGCCGTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | GCTGCATTACTGACAACGGCTGGGTTCTCTAAAAACTCGGCAGCCATTTATTTAATCTTCACAAGGAACTaGCTTCCATCCAGCTTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: AALLTTAGFSKNSAAIYLIFTRN*LPSSFP Trigger: GGGGAAGCTGGATGGAAGCCAGTTCCTTGTGAAGAT...TAAATAAATGGCTGCCGAGTTTTTAGAGAACCCAGCCGTTGTCAGTAATGCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR GCA 90 bp | AGGCAGAAGACTAATAAGCATAGACCTTTTATAGATGGGCACGAGGCTGCATTACTTTCTGGGACTGTCTaGGTCTCTTTTTGGGAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RQKTNKHRPFIDGHEAALLSGTV*VSFWEA Trigger: TGCCTCCCAAAAAGAGACGCAGACAGTCCCAGAAAG...TAATGCAGCCTCGTGCCCATCTATAAAAGGTCTATGCTTATTAGTCTTCTGCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR CCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTTTTGGGGCCCTCCAGTaGCTGTTGGTGAAACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRFGALQ*LLVKQQ Trigger: CTGCTGTTTCACCAACAGCCACTGGAGGGCCCCAAA...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCGGTGCTCTGATCAATaGGCTTGCTGGGCACCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRRCSDQ*ACWAPE Trigger: TTCAGGTGCCCAGCAAGCCCATTGATCAGAGCACCG...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AAAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAAGTTTTCCTTCTGGTCTaGGGAAATGGGATCGTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: KIPTVHDTKFNGSWCEAEVFLLV*GNGIVS Trigger: AGAGACGATCCCATTTCCCCAGACCAGAAGGAAAAC...TTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR TCA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGGTGAGGTACATGCACTaGCAGTTCTCCACAGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQVRYMH*QFSTAL Trigger: CAGAGCTGTGGAGAACTGTCAGTGCATGTACCTCAC...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR TCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTGTGAGGTACATGCACTaGCAGTTCTCCACAGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRVRYMH*QFSTAL Trigger: CAGAGCTGTGGAGAACTGTCAGTGCATGTACCTCAC...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AATAAGCATAGACCTTTTATAGATGGGCACGAGGCTGCATTACTGACAACGGCTGCCAAGGATGCAGCTTaGAAAACTGTTTTCCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: NKHRPFIDGHEAALLTTAAKDAA*KTVFLL Trigger: CAGAAGGAAAACAGTTTTCCAAGCTGCATCCTTGGC...AGCCGTTGTCAGTAATGCAGCCTCGTGCCCATCTATAAAAGGTCTATGCTTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
||
| CDS-3UTR CCA 90 bp | AAAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAAGCCAAGGATGCAGCTTaGAAAACTGTTTTCCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: KIPTVHDTKFNGSWCEAEAKDAA*KTVFLL Trigger: CAGAAGGAAAACAGTTTTCCAAGCTGCATCCTTGGC...TTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | AAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGATCTTCACAAGGAACTaGCTTCCATCCAGCTTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: KTRQPFIYKRCEQYKKRQIFTRN*LPSSFP Trigger: GGGGAAGCTGGATGGAAGCCAGTTCCTTGTGAAGAT...CTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR GCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCTTTCTGGGACTGTCTaGGTCTCTTTTTGGGAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRLSGTV*VSFWEA Trigger: TGCCTCCCAAAAAGAGACGCAGACAGTCCCAGAAAG...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR GCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTTCTGATCAATGGGCTTaGTGGGCACCTGAACAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRSDQWA*WAPEQC Trigger: ACACTGTTCAGGTGCCCAGCAAGCCCATTGATCAGA...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
||
| CDS-3UTR CCA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGAGTTCTCCACAGCTCTaGGGACTGAACAATGGCACT | + |
|
Preference number: 4 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQSSPQL*GLNNGT Trigger: AGTGCCATTGTTCAGTCCCCAGAGCTGTGGAGAACT...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTAGTTCTCCACAGCTCTaGGGACTGAACAATGGCACT | + |
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Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRSSPQL*GLNNGT Trigger: AGTGCCATTGTTCAGTCCCCAGAGCTGTGGAGAACT...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR GCA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTTCCCAGGGCCAAGGATaGAGCTTGGAAAACTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRSQGQG*SLENCF Trigger: AAAACAGTTTTCCAAGCTGCATCCTTGGCCCTGGGA...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CCA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGGTTTTCCTTCTGGTCTaGGGAAATGGGATCGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQVFLLV*GNGIVS Trigger: AGAGACGATCCCATTTCCCCAGACCAGAAGGAAAAC...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CAA 90 bp | ACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTCCTTCCGAGTTGGGCGCCTaGCCTGGTCTCGGTGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: TCETSPQQLREELKLCGPSELGA*PGLGEA Trigger: AGCCTCACCGAGACCAGGCAAGGCGCCCAACTCGGA...AGGACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CAA 90 bp | ACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTCCTTCCTCAGGGGTGTCCTaGACCAGAACAGGCCCCGGC | + |
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Preference number: 5 (lower is better) Translates to: TCETSPQQLREELKLCGPSSGVS*TRTGPG Trigger: GCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGGA...AGGACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CAA 90 bp | ATGACTTGCGAAACCTCCCCACAGCAGCTCCGGGAAGAACTGAAGCTCTGCGGTTCCGAGTTGGGCGCCTaGCCTGGTCTCGGTGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: MTCETSPQQLREELKLCGSELGA*PGLGEA Trigger: AGCCTCACCGAGACCAGGCAAGGCGCCCAACTCGGA...ACCGCAGAGCTTCAGTTCTTCCCGGAGCTGCTGTGGGGAGGTTTCGCAAGTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS TCA 90 bp | ACCGGCTTTCCGCTGCTCTATCAAACTGGGGTGACACCCAGGAAGTaGCGGTGCTCTGATCAATGGGCTTGCTGGGCACCTGAACAGTGT | + |
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Preference number: 5 (lower is better) Translates to: TGFPLLYQTGVTPRK*RCSDQWACWAPEQC Trigger: ACACTGTTCAGGTGCCCAGCAAGCCCATTGATCAGAGCACCGTCACTTCCTGGGTGTCACCCCAGTTTGATAGAGCAGCGGAAAGCCGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000155573.3 ENSMUST00000223237.2 |
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| CDS TCA 90 bp | CCGGTGTATCAGAAACCGGCTTTCCGCTGCTCTATCAAACTGGGGTaGCACCCAGGAAGTGACGGTGCTCTGATCAATGGGCTTGCTGGG | + |
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Preference number: 5 (lower is better) Translates to: PVYQKPAFRCSIKLG*HPGSDGALINGLAG Trigger: CCCAGCAAGCCCATTGATCAGAGCACCGTCACTTCCTGGGTGTCACCCCAGTTTGATAGAGCAGCGGAAAGCCGGTTTCTGATACACCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000155573.3 ENSMUST00000223237.2 |
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| CDS-3UTR CAA 90 bp | AAGCATAGACCTTTTATAGATGGGCACGAGGCTGCATTACTGACAACGGCTGGGTCCTCAGGGGTGTCCTaGACCAGAACAGGCCCCGGC | + |
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Preference number: 5 (lower is better) Translates to: KHRPFIDGHEAALLTTAGSSGVS*TRTGPG Trigger: GCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGGA...CCCAGCCGTTGTCAGTAATGCAGCCTCGTGCCCATCTATAAAAGGTCTATGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112152.8 |
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| CDS GCA 90 bp | GGCACTAAAGGCCTTCTGGGTGGGTCCTTTTCTGAGTTCTGGGGCTaGACTCGGTTGGATAGCAACAACGTCTCTGAACTGGAAGACTGT | + |
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Preference number: 5 (lower is better) Translates to: GTKGLLGGSFSEFWG*TRLDSNNVSELEDC Trigger: ACAGTCTTCCAGTTCAGAGACGTTGTTGCTATCCAACCGAGTGCAGCCCCAGAACTCAGAAAAGGACCCACCCAGAAGGCCTTTAGTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000155573.3 ENSMUST00000223237.2 |
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| CDS-3UTR CAA 90 bp | AAAATACCAACAGTTCATGACACTAAATTCAACGGTTCCTGGTGCGAGGCGGAATCCGAGTTGGGCGCCTaGCCTGGTCTCGGTGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: KIPTVHDTKFNGSWCEAESELGA*PGLGEA Trigger: AGCCTCACCGAGACCAGGCAAGGCGCCCAACTCGGA...TTCCGCCTCGCACCAGGAACCGTTGAATTTAGTGTCATGAACTGTTGGTATTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS TCA 90 bp | AACTGTGAGGTACATGCACTGACAGTTCTCCACAGCTCTGGGGACTaGACAATGGCACTAAAGGCCTTCTGGGTGGGTCCTTTTCTGAGT | + |
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Preference number: 5 (lower is better) Translates to: NCEVHALTVLHSSGD*TMALKAFWVGPFLS Trigger: ACTCAGAAAAGGACCCACCCAGAAGGCCTTTAGTGCCATTGTTCAGTCCCCAGAGCTGTGGAGAACTGTCAGTGCATGTACCTCACAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS CCA 90 bp | AACAATGGCACTAAAGGCCTTCTGGGTGGGTCCTTTTCTGAGTTCTaGGGCTGCACTCGGTTGGATAGCAACAACGTCTCTGAACTGGAA | + |
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Preference number: 5 (lower is better) Translates to: NNGTKGLLGGSFSEF*GCTRLDSNNVSELE Trigger: TTCCAGTTCAGAGACGTTGTTGCTATCCAACCGAGTGCAGCCCCAGAACTCAGAAAAGGACCCACCCAGAAGGCCTTTAGTGCCATTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CAA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGTCCGAGTTGGGCGCCTaGCCTGGTCTCGGTGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQSELGA*PGLGEA Trigger: AGCCTCACCGAGACCAGGCAAGGCGCCCAACTCGGA...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CAA 90 bp | CTAAAAACTCGGCAGCCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTTCCTCAGGGGTGTCCTaGACCAGAACAGGCCCCGGC | + |
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Preference number: 5 (lower is better) Translates to: LKTRQPFIYKRCEQYKKRSSGVS*TRTGPG Trigger: GCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGGA...ACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGGCTGCCGAGTTTTTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CAA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGTCCTCAGGGGTGTCCTaGACCAGAACAGGCCCCGGC | + |
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Preference number: 5 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQSSGVS*TRTGPG Trigger: GCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGGA...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS-3UTR CAA 90 bp | CCATTTATTTACAAACGCTGTGAACAGTACAAGAAACGTCAGAGGTCTAAACAGGGCCAAGGATGCAGCTaGGAAAACTGTTTTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: PFIYKRCEQYKKRQRSKQGQGCS*ENCFPS Trigger: AGAAGGAAAACAGTTTTCCAAGCTGCATCCTTGGCC...CTGTTTAGACCTCTGACGTTTCTTGTACTGTTCACAGCGTTTGTAAATAAATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS CAA 90 bp | CGTCTCCACGTGACCTTAATCCCATACTTCTCCTCAGGGGTGTCCTaGACCAGAACAGGCCCCGGCTCTGGGCTGCTGGGAGTCCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: RLHVTLIPYFSSGVS*TRTGPGSGLLGVPG Trigger: CCCTGGGACTCCCAGCAGCCCAGAGCCGGGGCCTGTTCTGGTCAAGGACACCCCTGAGGAGAAGTATGGGATTAAGGTCACGTGGAGACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS GCA 72 bp | CCGGCTCTGGGCTGCTGGGAGTCCCAGGGCCAAGGATaGAGCTTGGAAAACTGTTTTCCTTCTGGTCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: PALGCWESQGQG*SLENCFPSGLG Trigger: CCCCAGACCAGAAGGAAAACAGTTTTCCAAGCTGCATCCTTGGCCCTGGGACTCCCAGCAGCCCAGAGCCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000223237.2 |
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| CDS TCA 72 bp | CCGCTGCTCTATCAAACTGGGGTGACACCCAGGAAGTaGCGGTGCTCTGATCAATGGGCTTGCTGGGCACCT | + |
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Preference number: 6 (lower is better) Translates to: PLLYQTGVTPRK*RCSDQWACWAP Trigger: AGGTGCCCAGCAAGCCCATTGATCAGAGCACCGTCACTTCCTGGGTGTCACCCCAGTTTGATAGAGCAGCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000155573.3 ENSMUST00000223237.2 |
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| CDS TCA 72 bp | CAGAAACCGGCTTTCCGCTGCTCTATCAAACTGGGGTaGCACCCAGGAAGTGACGGTGCTCTGATCAATGGG | + |
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Preference number: 6 (lower is better) Translates to: QKPAFRCSIKLG*HPGSDGALING Trigger: CCCATTGATCAGAGCACCGTCACTTCCTGGGTGTCACCCCAGTTTGATAGAGCAGCGGAAAGCCGGTTTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000155573.3 ENSMUST00000223237.2 |
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| CDS CAA 72 bp | GAAGACTGTGGACTCTCAAAGGTTAGACGTGGAAACTaGCAGGTAGATCTCCGAGTTGGGCGCCTTGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: EDCGLSKVRRGN*QVDLRVGRLAW Trigger: CCAGGCAAGGCGCCCAACTCGGAGATCTACCTGCAAGTTTCCACGTCTAACCTTTGAGAGTCCACAGTCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000155573.3 ENSMUST00000223237.2 |
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| CDS CCA 72 bp | GTGGGTCCTTTTCTGAGTTCTGGGGCTGCACTCGGTTaGATAGCAACAACGTCTCTGAACTGGAAGACTGTG | + |
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Preference number: 6 (lower is better) Translates to: VGPFLSSGAALG*IATTSLNWKTV Trigger: CACAGTCTTCCAGTTCAGAGACGTTGTTGCTATCCAACCGAGTGCAGCCCCAGAACTCAGAAAAGGACCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000155573.3 ENSMUST00000223237.2 |
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| CDS CAA 72 bp | GGTGGGTCCTTTTCTGAGTTCTGGGGCTGCACTCGGTaGGATAGCAACAACGTCTCTGAACTGGAAGACTGT | + |
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Preference number: 6 (lower is better) Translates to: GGSFSEFWGCTR*DSNNVSELEDC Trigger: ACAGTCTTCCAGTTCAGAGACGTTGTTGCTATCCAACCGAGTGCAGCCCCAGAACTCAGAAAAGGACCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000057421.15 ENSMUST00000112151.2 ENSMUST00000112152.8 ENSMUST00000155573.3 ENSMUST00000223237.2 |
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