Pregenerated sensors for RHEB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028945Ensembl transcript IDs: ENSMUST00000030787.9
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GCACTTGGGAGGCAGAGGCAGGCAAATCTCGAGTTCGAGGACAGCCTGGTCTACTTCCAGGACAGCCAGTaGTGTTACATAGAGAAACCC | + |
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Preference number: 2 (lower is better) Translates to: ALGRQRQANLEFEDSLVYFQDSQ*CYIEKP Trigger: GGGTTTCTCTATGTAACAGCACTGGCTGTCCTGGAA...GTAGACCAGGCTGTCCTCGAACTCGAGATTTGCCTGCCTCTGCCTCCCAAGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030787.9 |
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| 3UTR-3UTR CCA 90 bp | GCACTTGGGAGGCAGAGGCAGGCAAATCTCGAGTTCGAGGACAGCCTGGTCTACGTTTGCTTCCTCAGGTaGAATATATCCCCAGTGTCC | + |
|
Preference number: 2 (lower is better) Translates to: ALGRQRQANLEFEDSLVYVCFLR*NISPVS Trigger: GGACACTGGGGATATATTCCACCTGAGGAAGCAAAC...GTAGACCAGGCTGTCCTCGAACTCGAGATTTGCCTGCCTCTGCCTCCCAAGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030787.9 |
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| 3UTR-3UTR TCA 90 bp | ACAGAGTGGGTTCCAGGACAGCCAGTGCTGTTACATAGAGAAACCCTGTCTCGAGACGTTAACATAATCTaGAAGGGGAGGACCCCTGAC | + |
|
Preference number: 2 (lower is better) Translates to: TEWVPGQPVLLHRETLSRDVNII*KGRTPD Trigger: GTCAGGGGTCCTCCCCTTTCAGATTATGTTAACGTC...TCGAGACAGGGTTTCTCTATGTAACAGCACTGGCTGTCCTGGAACCCACTCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030787.9 |
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| 3UTR-3UTR CAA 90 bp | ACAGAGTGGGTTCCAGGACAGCCAGTGCTGTTACATAGAGAAACCCTGTCTCGAAGGATGACGGGCAGTTaGCTTCCTCAGGTGGAATAT | + |
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Preference number: 3 (lower is better) Translates to: TEWVPGQPVLLHRETLSRRMTGS*LPQVEY Trigger: ATATTCCACCTGAGGAAGCAAACTGCCCGTCATCCT...TCGAGACAGGGTTTCTCTATGTAACAGCACTGGCTGTCCTGGAACCCACTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030787.9 |
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| CDS-3UTR TCA 90 bp | TGCACGCCCATGCCCCATCCTAACATGGTTCCTGGTTTAAAAACCACACCAAGTCGAAGACTTTCCTTGTaGAGCTGCTCCATCAATCTT | + |
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Preference number: 4 (lower is better) Translates to: CTPMPHPNMVPGLKTTPSRRLSL*SCSINL Trigger: AAGATTGATGGAGCAGCTTCACAAGGAAAGTCTTCG...ACTTGGTGTGGTTTTTAAACCAGGAACCATGTTAGGATGGGGCATGGGCGTGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030787.9 |
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| CDS-3UTR CAA 90 bp | TGCACGCCCATGCCCCATCCTAACATGGTTCCTGGTTTAAAAACCACACCAAGTCTGAAGATGATACTCTaGACCATTTACCGTGATCAA | + |
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Preference number: 5 (lower is better) Translates to: CTPMPHPNMVPGLKTTPSLKMIL*TIYRDQ Trigger: TTGATCACGGTAAATGGTCAAGAGTATCATCTTCAG...ACTTGGTGTGGTTTTTAAACCAGGAACCATGTTAGGATGGGGCATGGGCGTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030787.9 |
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