Pregenerated sensors for RHD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028825Ensembl transcript IDs: ENSMUST00000030627.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TCTGTCATGAAACCAAACATACTATTTAAACTAAGATaGCCACTCGGAAGCCTTTCTTGTAACACAGGATGC | + |
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Preference number: 3 (lower is better) Translates to: SVMKPNILFKLR*PLGSLSCNTGC Trigger: GCATCCTGTGTTACAAGAAAGGCTTCCGAGTGGTCATCTTAGTTTAAATAGTATGTTTGGTTTCATGACAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | GCAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGCTGCACCAGGTTaGCCTTCCCCAGGACAGCGC | + |
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Preference number: 4 (lower is better) Translates to: ADKRDTKKGHLSSHPASLSAAPG*PSPGQR Trigger: GCGCTGTCCTGGGGAAGGTCAACCTGGTGCAGCTGA...GAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | GATGCAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGAGGGTGACTCAGGGCTaGCATGGAGGTGGCTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: DADKRDTKKGHLSSHPASRVTQG*HGGGCH Trigger: GTGACAGCCACCTCCATGTCAGCCCTGAGTCACCCT...CGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTGCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | GCAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCGAGCTCGTAGCCATTTaGACCTTCTCTGTCTGGGCG | + |
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Preference number: 4 (lower is better) Translates to: ADKRDTKKGHLSSHPASLELVAI*TFSVWA Trigger: CGCCCAGACAGAGAAGGTTCAAATGGCTACGAGCTC...GAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | CAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTAGAGGGTGCCCAGCATaGCAAACAGACTGGAGCTCG | + |
|
Preference number: 4 (lower is better) Translates to: QTKGTQRKGISLLTRLRSRGCPA*QTDWSS Trigger: CGAGCTCCAGTCTGTTTGCCATGCTGGGCACCCTCT...AGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | GCAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCCTGTGTCGTGGGGGATaGAAAAACAGAAGAGGAGAC | + |
|
Preference number: 4 (lower is better) Translates to: ADKRDTKKGHLSSHPASLLCRGG*KNRRGD Trigger: GTCTCCTCTTCTGTTTTTTCATCCCCCACGACACAG...GAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR GCA 90 bp | CACTCGGAAGCCTTTCTTGTAACACAGGATGCAGACAAAAGGGACACAAAGAAAGGAGGTGGCTGTCACTaGGCTCACTGCCAGGGCGTA | + |
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Preference number: 4 (lower is better) Translates to: HSEAFLVTQDADKRDTKKGGGCH*AHCQGV Trigger: TACGCCCTGGCAGTGAGCGCAGTGACAGCCACCTCC...TTTCTTTGTGTCCCTTTTGTCTGCATCCTGTGTTACAAGAAAGGCTTCCGAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | CAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTACCTGGCCCAGGAAATaGTCCAGCAAGATTGTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: QTKGTQRKGISLLTRLRSTWPRK*SSKIVP Trigger: GGGAACAATCTTGCTGGACCATTTCCTGGGCCAGGT...AGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | AAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATTTCCATTGGAGGACCTaGCCCAGGAAATGGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: KRDTKKGHLSSHPASLSDFHWRT*PRKWSS Trigger: GCTGGACCATTTCCTGGGCCAGGTCCTCCAATGGAA...ATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | AAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATTCCTGGGCAGAGATCTaGAAAGCCACCAAGCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: KRDTKKGHLSSHPASLSDSWAEI*KATKPQ Trigger: CTGTGGCTTGGTGGCTTTCCAGATCTCTGCCCAGGA...ATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | AAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATTCTCACCCACTCTCCTaGGCAGAGATCTGGAAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: KRDTKKGHLSSHPASLSDSHPLS*AEIWKA Trigger: GGCTTTCCAGATCTCTGCCCAGGAGAGTGGGTGAGA...ATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | GGAAGCCTTTCTTGTAACACAGGATGCAGACAAAAGGGACACAAAGAAAGGGCAGACTCAGGGCTGACATaGAGGTGGCTGTCACTGCGC | + |
|
Preference number: 4 (lower is better) Translates to: GSLSCNTGCRQKGHKERADSGLT*RWLSLR Trigger: GCGCAGTGACAGCCACCTCCATGTCAGCCCTGAGTC...TGCCCTTTCTTTGTGTCCCTTTTGTCTGCATCCTGTGTTACAAGAAAGGCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | AAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATGCATGGAAATCCAAGGTaGAGAAATCAGGCAACCCGG | + |
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Preference number: 4 (lower is better) Translates to: KGTQRKGISLLTRLRSQMHGNPR*RNQATR Trigger: CCGGGTTGCCTGATTTCTTCACCTTGGATTTCCATG...CATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | GCAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTTGATCTTGTTCCATTaGAGGACCTGGCCCAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: ADKRDTKKGHLSSHPASLLILFH*RTWPRK Trigger: TTTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAA...GAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | GGAAGCCTTTCTTGTAACACAGGATGCAGACAAAAGGGACACAAAGAAAGGGCAACGCCCGTGGACACTTaGCTCCCCAGATGGAGATCA | + |
|
Preference number: 4 (lower is better) Translates to: GSLSCNTGCRQKGHKERATPVDT*LPRWRS Trigger: TGATCTCCATCTGGGGAGCCAAGTGTCCACGGGCGT...TGCCCTTTCTTTGTGTCCCTTTTGTCTGCATCCTGTGTTACAAGAAAGGCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | AAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATGGATGTGAACCATGTTaGTCTTCCCTTGAGGGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: KRDTKKGHLSSHPASLSDGCEPC*SSLEGD Trigger: GTCACCCTCAAGGGAAGATCAACATGGTTCACATCC...ATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | GGAAGCCTTTCTTGTAACACAGGATGCAGACAAAAGGGACACAAAGAAAGGGCAGAGCCCTCCACACTCTaGCACTTAGGAGACAACCTG | + |
|
Preference number: 4 (lower is better) Translates to: GSLSCNTGCRQKGHKERAEPSTL*HLGDNL Trigger: CAGGTTGTCTCCTAAGTGTCAGAGTGTGGAGGGCTC...TGCCCTTTCTTTGTGTCCCTTTTGTCTGCATCCTGTGTTACAAGAAAGGCTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | GATGCAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGACTGCATTGTGGATGTaGACCATGTTGATCTTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: DADKRDTKKGHLSSHPASTALWM*TMLIFP Trigger: AGGGAAGATCAACATGGTTCACATCCACAATGCAGT...CGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | AAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATAGAGATCCGAGGACTTaGGCTCTGTCACTATCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: KRDTKKGHLSSHPASLSDRDPRT*ALSLSE Trigger: TTCAGATAGTGACAGAGCCCAAGTCCTCGGATCTCT...ATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | AAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATTGCTGGACAGATTGTTaGTCTTGTTCCATTGGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: KRDTKKGHLSSHPASLSDCWTDC*SCSIGG Trigger: TCCTCCAATGGAACAAGATCAACAATCTGTCCAGCA...ATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | GACCACTCGGAAGCCTTTCTTGTAACACAGGATGCAGACAAAAGGGACACAAAGGGGCGTAGTAGGTGTTaGACACAGCATTCCTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: DHSEAFLVTQDADKRDTKGRSRC*TQHSFS Trigger: AGAAAAGGAATGCTGTGTTCAACACCTACTACGCCC...CTTTGTGTCCCTTTTGTCTGCATCCTGTGTTACAAGAAAGGCTTCCGAGTGGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR TCA 90 bp | GGAAGCCTTTCTTGTAACACAGGATGCAGACAAAAGGGACACAAAGAAAGGGCATGTGTTCTGTCATTTTaGAGACCTTCTCGTCGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: GSLSCNTGCRQKGHKERACVLSF*RPSRRQ Trigger: TTGCCGACGAGAAGGTCTTCAAAATGACAGAACACA...TGCCCTTTCTTTGTGTCCCTTTTGTCTGCATCCTGTGTTACAAGAAAGGCTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CCA 90 bp | GGAAGCCTTTCTTGTAACACAGGATGCAGACAAAAGGGACACAAAGAAAGGGCACTCATGGTAGCTATCTaGATGCTGGACAGATTGTTG | + |
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Preference number: 4 (lower is better) Translates to: GSLSCNTGCRQKGHKERALMVAI*MLDRLL Trigger: CAACAATCTGTCCAGCATCCAGATAGCTACCATGAG...TGCCCTTTCTTTGTGTCCCTTTTGTCTGCATCCTGTGTTACAAGAAAGGCTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS GCA 90 bp | AATCAGGCAACCCGGGGCGCCCACGGCCACGCCCCCTGCCAGCACTaGATTGTGGATGTGAACCATGTTGATCTTCCCTTGAGGGTGACT | + |
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Preference number: 5 (lower is better) Translates to: NQATRGAHGHAPCQH*IVDVNHVDLPLRVT Trigger: AGTCACCCTCAAGGGAAGATCAACATGGTTCACATCCACAATGCAGTGCTGGCAGGGGGCGTGGCCGTGGGCGCCCCGGGTTGCCTGATT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS TCA 90 bp | CGGCCACGCCCCCTGCCAGCACTGCATTGTGGATGTGAACCATGTTaGTCTTCCCTTGAGGGTGACTCAGGGCTGACATGGAGGTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: RPRPLPALHCGCEPC*SSLEGDSGLTWRWL Trigger: CAGCCACCTCCATGTCAGCCCTGAGTCACCCTCAAGGGAAGATCAACATGGTTCACATCCACAATGCAGTGCTGGCAGGGGGCGTGGCCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS GCA 90 bp | CGAGGACTTGGGCTCTGTCACTATCTGAAGGCAGTAGTAGGTAAGTaGTCCCAGCAGACCCGGCAAGCCGAAGGTGTAGTGGATCCCACT | + |
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Preference number: 5 (lower is better) Translates to: RGLGLCHYLKAVVGK*SQQTRQAEGVVDPT Trigger: AGTGGGATCCACTACACCTTCGGCTTGCCGGGTCTGCTGGGAGCACTTACCTACTACTGCCTTCAGATAGTGACAGAGCCCAAGTCCTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CAA 90 bp | GATGCAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGAATGGTCCAGCAAGATaGTTCCCTGCACCCCGAGGG | + |
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Preference number: 5 (lower is better) Translates to: DADKRDTKKGHLSSHPASNGPAR*FPAPRG Trigger: CCCTCGGGGTGCAGGGAACAATCTTGCTGGACCATT...CGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTGCATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CAA 90 bp | CAGGATGCAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTGGCACCAAAGGCCATaGCCTCCATCAGCACCATCA | + |
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Preference number: 5 (lower is better) Translates to: QDADKRDTKKGHLSSHPAWHQRP*PPSAPS Trigger: TGATGGTGCTGATGGAGGCAATGGCCTTTGGTGCCA...AGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTGCATCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CAA 90 bp | CAGGATGCAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTGTTGATCTTGTTCCATaGGAGGACCTGGCCCAGGAA | + |
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Preference number: 5 (lower is better) Translates to: QDADKRDTKKGHLSSHPAVDLVP*EDLAQE Trigger: TTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAAC...AGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTGCATCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CAA 90 bp | AAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATGGAGCTCGTAGCCATTaGAACCTTCTCTGTCTGGGC | + |
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Preference number: 5 (lower is better) Translates to: KRDTKKGHLSSHPASLSDGARSH*NLLCLG Trigger: GCCCAGACAGAGAAGGTTCAAATGGCTACGAGCTCC...ATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CAA 90 bp | CAGACAAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGCATTCCTTTTCTTaGTCCCTTCCAGGAGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: QTKGTQRKGISLLTRLRSQHSFS*SLPGEQ Trigger: CTGCTCTCCTGGAAGGGACAAAGAAAAGGAATGCTG...AGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTTGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CCA 90 bp | ATGGTAGCTATCTGGATGCTGGACAGATTGTTGATCTTGTTCCATTaGAGGACCTGGCCCAGGAAATGGTCCAGCAAGATTGTTCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: MVAIWMLDRLLILFH*RTWPRKWSSKIVPC Trigger: GCAGGGAACAATCTTGCTGGACCATTTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAACAATCTGTCCAGCATCCAGATAGCTACCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CAA 90 bp | AAAAGGGACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATTCCAGGAGAGCAGAGTaGATAGCTGGCCAGAATATC | + |
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Preference number: 5 (lower is better) Translates to: KRDTKKGHLSSHPASLSDSRRAE*IAGQNI Trigger: GATATTCTGGCCAGCTATCAACTCTGCTCTCCTGGA...ATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGTCCCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS-3UTR CAA 90 bp | ACACAAAGAAAGGGCATCTCTCTTCTCACCCGGCTTCGCTCTCAGATGATTTCGGACAGATTGTTGATCTaGTTCCATTGGAGGACCTGG | + |
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Preference number: 5 (lower is better) Translates to: TQRKGISLLTRLRSQMISDRLLI*FHWRTW Trigger: CCAGGTCCTCCAATGGAACAAGATCAACAATCTGTC...CGAAATCATCTGAGAGCGAAGCCGGGTGAGAAGAGAGATGCCCTTTCTTTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS GCA 72 bp | ACCCGGGGCGCCCACGGCCACGCCCCCTGCCAGCACTaGATTGTGGATGTGAACCATGTTGATCTTCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: TRGAHGHAPCQH*IVDVNHVDLPL Trigger: CAAGGGAAGATCAACATGGTTCACATCCACAATGCAGTGCTGGCAGGGGGCGTGGCCGTGGGCGCCCCGGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS GCA 72 bp | AAGGCCATTGCCTCCATCAGCACCATCACGGTCAGCTaGACCAGGTTGACCTTCCCCAGGACAGCGCCCGCT | + |
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Preference number: 6 (lower is better) Translates to: KAIASISTITVS*TRLTFPRTAPA Trigger: AGCGGGCGCTGTCCTGGGGAAGGTCAACCTGGTGCAGCTGACCGTGATGGTGCTGATGGAGGCAATGGCCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 90 bp | CCACTGGAGTTCTGCAGCATGTGGTTCAAACACGCCCGTGGACACTaGGCTCCCCAGATGGAGATCAACCCAGCTATGAGGCCCAGCACC | + |
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Preference number: 6 (lower is better) Translates to: PLEFCSMWFKHARGH*APQMEINPAMRPST Trigger: GGTGCTGGGCCTCATAGCTGGGTTGATCTCCATCTGGGGAGCCAAGTGTCCACGGGCGTGTTTGAACCACATGCTGCAGAACTCCAGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS TCA 72 bp | AGGACGAGGACAGGAAGCCGAAGCCCAAGGCTGCCATaGGGGTCAAATTCCGGAGGACTTGATAGCTCGCCA | + |
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Preference number: 6 (lower is better) Translates to: RTRTGSRSPRLP*GSNSGGLDSSP Trigger: TGGCGAGCTATCAAGTCCTCCGGAATTTGACCCTCATGGCAGCCTTGGGCTTCGGCTTCCTGTCCTCGTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 72 bp | GCCCAAGGCTGCCATGAGGGTCAAATTCCGGAGGACTaGATAGCTCGCCATGAACCTGTGATCCACCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: AQGCHEGQIPED*IARHEPVIHLG Trigger: GCCCAGGTGGATCACAGGTTCATGGCGAGCTATCAAGTCCTCCGGAATTTGACCCTCATGGCAGCCTTGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS GCA 72 bp | GGGCTCTGTCACTATCTGAAGGCAGTAGTAGGTAAGTaGTCCCAGCAGACCCGGCAAGCCGAAGGTGTAGTG | + |
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Preference number: 6 (lower is better) Translates to: GLCHYLKAVVGK*SQQTRQAEGVV Trigger: CACTACACCTTCGGCTTGCCGGGTCTGCTGGGAGCACTTACCTACTACTGCCTTCAGATAGTGACAGAGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS TCA 72 bp | CCCCTGCCAGCACTGCATTGTGGATGTGAACCATGTTaGTCTTCCCTTGAGGGTGACTCAGGGCTGACATGG | + |
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Preference number: 6 (lower is better) Translates to: PLPALHCGCEPC*SSLEGDSGLTW Trigger: CCATGTCAGCCCTGAGTCACCCTCAAGGGAAGATCAACATGGTTCACATCCACAATGCAGTGCTGGCAGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CCA 72 bp | GAACCTTCTCTGTCTGGGCGTTCTCACCCACTCTCCTaGGCAGAGATCTGGAAAGCCACCAAGCCACAGTTA | + |
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Preference number: 6 (lower is better) Translates to: EPSLSGRSHPLS*AEIWKATKPQL Trigger: TAACTGTGGCTTGGTGGCTTTCCAGATCTCTGCCCAGGAGAGTGGGTGAGAACGCCCAGACAGAGAAGGTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 72 bp | GCCCAGCATGGCAAACAGACTGGAGCTCGTAGCCATTaGAACCTTCTCTGTCTGGGCGTTCTCACCCACTCT | + |
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Preference number: 6 (lower is better) Translates to: AQHGKQTGARSH*NLLCLGVLTHS Trigger: AGAGTGGGTGAGAACGCCCAGACAGAGAAGGTTCAAATGGCTACGAGCTCCAGTCTGTTTGCCATGCTGGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 72 bp | TTCTGCAGCATGTGGTTCAAACACGCCCGTGGACACTaGGCTCCCCAGATGGAGATCAACCCAGCTATGAGG | + |
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Preference number: 6 (lower is better) Translates to: FCSMWFKHARGH*APQMEINPAMR Trigger: CCTCATAGCTGGGTTGATCTCCATCTGGGGAGCCAAGTGTCCACGGGCGTGTTTGAACCACATGCTGCAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 90 bp | ACAGGTAAGGTGCTCATGGTAGCTATCTGGATGCTGGACAGATTGTaGATCTTGTTCCATTGGAGGACCTGGCCCAGGAAATGGTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: TGKVLMVAIWMLDRL*ILFHWRTWPRKWSS Trigger: GCTGGACCATTTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAACAATCTGTCCAGCATCCAGATAGCTACCATGAGCACCTTACCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 90 bp | AGCACAGGTAAGGTGCTCATGGTAGCTATCTGGATGCTGGACAGATaGTTGATCTTGTTCCATTGGAGGACCTGGCCCAGGAAATGGTCC | + |
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Preference number: 6 (lower is better) Translates to: STGKVLMVAIWMLDR*LILFHWRTWPRKWS Trigger: GGACCATTTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAACAATCTGTCCAGCATCCAGATAGCTACCATGAGCACCTTACCTGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CCA 72 bp | CTGGACAGATTGTTGATCTTGTTCCATTGGAGGACCTaGCCCAGGAAATGGTCCAGCAAGATTGTTCCCTGC | + |
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Preference number: 6 (lower is better) Translates to: LDRLLILFHWRT*PRKWSSKIVPC Trigger: GCAGGGAACAATCTTGCTGGACCATTTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAACAATCTGTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 72 bp | AAGGTGCTCATGGTAGCTATCTGGATGCTGGACAGATaGTTGATCTTGTTCCATTGGAGGACCTGGCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: KVLMVAIWMLDR*LILFHWRTWPR Trigger: CCTGGGCCAGGTCCTCCAATGGAACAAGATCAACAATCTGTCCAGCATCCAGATAGCTACCATGAGCACCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 90 bp | GCCCCAAACACGTGCCCGTGCATCATGATGATGTGTTCTGTCATTTaGAAGACCTTCTCGTCGGCAAATCTGATGGCACCAAAGGCCATT | + |
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Preference number: 6 (lower is better) Translates to: APNTCPCIMMMCSVI*KTFSSANLMAPKAI Trigger: AATGGCCTTTGGTGCCATCAGATTTGCCGACGAGAAGGTCTTCAAAATGACAGAACACATCATCATGATGCACGGGCACGTGTTTGGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 72 bp | ATGGTAGCTATCTGGATGCTGGACAGATTGTTGATCTaGTTCCATTGGAGGACCTGGCCCAGGAAATGGTCC | + |
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Preference number: 6 (lower is better) Translates to: MVAIWMLDRLLI*FHWRTWPRKWS Trigger: GGACCATTTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAACAATCTGTCCAGCATCCAGATAGCTACCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 72 bp | GTGCTCATGGTAGCTATCTGGATGCTGGACAGATTGTaGATCTTGTTCCATTGGAGGACCTGGCCCAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VLMVAIWMLDRL*ILFHWRTWPRK Trigger: TTTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAACAATCTGTCCAGCATCCAGATAGCTACCATGAGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 90 bp | AAGGTGCTCATGGTAGCTATCTGGATGCTGGACAGATTGTTGATCTaGTTCCATTGGAGGACCTGGCCCAGGAAATGGTCCAGCAAGATT | + |
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Preference number: 6 (lower is better) Translates to: KVLMVAIWMLDRLLI*FHWRTWPRKWSSKI Trigger: AATCTTGCTGGACCATTTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAACAATCTGTCCAGCATCCAGATAGCTACCATGAGCACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 72 bp | TATCTGGATGCTGGACAGATTGTTGATCTTGTTCCATaGGAGGACCTGGCCCAGGAAATGGTCCAGCAAGAT | + |
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Preference number: 6 (lower is better) Translates to: YLDAGQIVDLVP*EDLAQEMVQQD Trigger: ATCTTGCTGGACCATTTCCTGGGCCAGGTCCTCCAATGGAACAAGATCAACAATCTGTCCAGCATCCAGATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CAA 72 bp | ACGTGCCCGTGCATCATGATGATGTGTTCTGTCATTTaGAAGACCTTCTCGTCGGCAAATCTGATGGCACCA | + |
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Preference number: 6 (lower is better) Translates to: TCPCIMMMCSVI*KTFSSANLMAP Trigger: TGGTGCCATCAGATTTGCCGACGAGAAGGTCTTCAAAATGACAGAACACATCATCATGATGCACGGGCACGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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| CDS CCA 72 bp | GAGATCAGCACAGGTAAGGTGCTCATGGTAGCTATCTaGATGCTGGACAGATTGTTGATCTTGTTCCATTGG | + |
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Preference number: 6 (lower is better) Translates to: EISTGKVLMVAI*MLDRLLILFHW Trigger: CCAATGGAACAAGATCAACAATCTGTCCAGCATCCAGATAGCTACCATGAGCACCTTACCTGTGCTGATCTC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030627.8 |
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