Pregenerated sensors for RHCG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030549Ensembl transcript IDs: ENSMUST00000032766.5, ENSMUST00000161084.3, ENSMUST00000172788.3
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTGTCCGAATCTCCTCCATTCTCAGCCCGGTGAGCCCCCTGGGATaGAGCGGGTGTAGAGGTGCTGGAGTCAGGCCAGTGGGCCTTTCC | + |
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Preference number: 1 (lower is better) Translates to: FVRISSILSPVSPLG*SGCRGAGVRPVGLS Trigger: GGAAAGGCCCACTGGCCTGACTCCAGCACCTCTACACCCGCTTCATCCCAGGGGGCTCACCGGGCTGAGAATGGAGGAGATTCGGACAAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| 3UTR TCA 90 bp | GGCTTGGAGCTCACTTTGTCCGAATCTCCTCCATTCTCAGCCCGGTaGGCCCCCTGGGATGAAGCGGGTGTAGAGGTGCTGGAGTCAGGC | + |
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Preference number: 1 (lower is better) Translates to: GLELTLSESPPFSAR*APWDEAGVEVLESG Trigger: GCCTGACTCCAGCACCTCTACACCCGCTTCATCCCAGGGGGCTCACCGGGCTGAGAATGGAGGAGATTCGGACAAAGTGAGCTCCAAGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| 3UTR-3UTR TCA 90 bp | GGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTCCGAACCATTCTCAGCCCGGTaGGCCCCCTGCTTCTCACCT | + |
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Preference number: 2 (lower is better) Translates to: GRDRPSAADPGLELTLSEPFSAR*APCFSP Trigger: AGGTGAGAAGCAGGGGGCTCACCGGGCTGAGAATGG...TTCGGACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172788.3 |
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| 3UTR-3UTR GCA 90 bp | AGCATCATGACCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGGCAATCTGTGGGGCCTaGTTCTCACCTGCCCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: SIMTAGRDRPSAADPGLEAICGA*FSPALG Trigger: TCCCAGGGCAGGTGAGAAGCAGGCCCCACAGATTGC...CTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGGTCATGATGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| 3UTR-3UTR CCA 90 bp | ATCATGACCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCGCTCTCTCCAGAGCTTaGGGGCAATCTGTGGGGCCT | + |
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Preference number: 2 (lower is better) Translates to: IMTAGRDRPSAADPGLELALSRA*GQSVGP Trigger: AGGCCCCACAGATTGCCCCCAAGCTCTGGAGAGAGC...GAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGGTCATGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| 3UTR CAA 90 bp | AAAGAGCATCAACAACATTTATTTACTACACAAAATAGAGTGATCTaGGGTGCCTTGGAACATGGGAAATACATTGTTGGGGAGCAGGCG | + |
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Preference number: 2 (lower is better) Translates to: KEHQQHLFTTQNRVI*GALEHGKYIVGEQA Trigger: CGCCTGCTCCCCAACAATGTATTTCCCATGTTCCAAGGCACCCAAGATCACTCTATTTTGTGTAGTAAATAAATGTTGTTGATGCTCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| 3UTR TCA 72 bp | GAGTCAGGCCAGTGGGCCTTTCCGCTGCCCTGTCCCTaGGTTCCCAGATATGTCAGCCCCAGCTCTCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: ESGQWAFPLPCP*VPRYVSPSSLQ Trigger: CTGGAGAGAGCTGGGGCTGACATATCTGGGAACTCAGGGACAGGGCAGCGGAAAGGCCCACTGGCCTGACTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| 3UTR TCA 72 bp | ATCTCCTCCATTCTCAGCCCGGTGAGCCCCCTGGGATaGAGCGGGTGTAGAGGTGCTGGAGTCAGGCCAGTG | + |
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Preference number: 3 (lower is better) Translates to: ISSILSPVSPLG*SGCRGAGVRPV Trigger: CACTGGCCTGACTCCAGCACCTCTACACCCGCTTCATCCCAGGGGGCTCACCGGGCTGAGAATGGAGGAGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| 3UTR TCA 72 bp | AGCATCAACAACATTTATTTACTACACAAAATAGAGTaGTCTTGGGTGCCTTGGAACATGGGAAATACATTG | + |
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Preference number: 3 (lower is better) Translates to: SINNIYLLHKIE*SWVPWNMGNTL Trigger: CAATGTATTTCCCATGTTCCAAGGCACCCAAGATCACTCTATTTTGTGTAGTAAATAAATGTTGTTGATGCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000172788.3 |
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| CDS-3UTR CCA 90 bp | ATGAGCATCATGACCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGCGCCCACCAGGGCCATaGCCAGGCTCAGGAGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: MSIMTAGRDRPSAADPGLRPPGP*PGSGGG Trigger: GCCTCCTCCTGAGCCTGGCCATGGCCCTGGTGGGCG...CAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGGTCATGATGCTCAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR TCA 90 bp | CTCTCCAGAGCTTGGGGGCAATCTGTGGGGCCTGCTTCTCACCTGCCCTGGGAGCCACAATGCCGCCTATaGTGCCAGGAATGCCGTGCA | + |
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Preference number: 4 (lower is better) Translates to: LSRAWGQSVGPASHLPWEPQCRL*CQECRA Trigger: TGCACGGCATTCCTGGCATCATAGGCGGCATTGTGG...CTCCCAGGGCAGGTGAGAAGCAGGCCCCACAGATTGCCCCCAAGCTCTGGAGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CCA 90 bp | CTCTCCAGAGCTTGGGGGCAATCTGTGGGGCCTGCTTCTCACCTGCCCTGGGAGCCCCACCTGCAAGCGTaGCATTCTGGATGTGCACCA | + |
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Preference number: 4 (lower is better) Translates to: LSRAWGQSVGPASHLPWEPHLQA*HSGCAP Trigger: TGGTGCACATCCAGAATGCCACGCTTGCAGGTGGGG...CTCCCAGGGCAGGTGAGAAGCAGGCCCCACAGATTGCCCCCAAGCTCTGGAGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR TCA 90 bp | GCCAGTGGGCCTTTCCGCTGCCCTGTCCCTGAGTTCCCAGATATGTCAGCCCCAGGATCCAGGTCACTGTaGGCCCAAAGTAGGCGCCAA | + |
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Preference number: 4 (lower is better) Translates to: ASGPFRCPVPEFPDMSAPGSRSL*AQSRRQ Trigger: TTGGCGCCTACTTTGGGCTCACAGTGACCTGGATCC...TGGGGCTGACATATCTGGGAACTCAGGGACAGGGCAGCGGAAAGGCCCACTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR TCA 90 bp | CCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTAGGAGAGGTAGGTATTaGGGGCTGCTCGGTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: PQAGTDLLQLTLAWSSLCRRGRY*GLLGAG Trigger: CCCAGCACCGAGCAGCCCTCAATACCTACCTCTCCT...ACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | ATGAGCATCATGACCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGTCATCTCCGCAGCTGTaGCCACACCCACCCCACCTG | + |
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Preference number: 4 (lower is better) Translates to: MSIMTAGRDRPSAADPGLSSPQL*PHPPHL Trigger: CAGGTGGGGTGGGTGTGGGCACAGCTGCGGAGATGA...CAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGGTCATGATGCTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | CGCTGCCCTGTCCCTGAGTTCCCAGATATGTCAGCCCCAGCTCTCTCCAGAGCTCACATGTGTCCTGGATaGGATGGCGGGACTCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: RCPVPEFPDMSAPALSRAHMCPG*DGGTPG Trigger: TCCTGGAGTCCCGCCATCGCATCCAGGACACATGTG...AGCTCTGGAGAGAGCTGGGGCTGACATATCTGGGAACTCAGGGACAGGGCAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | CTCTCCAGAGCTTGGGGGCAATCTGTGGGGCCTGCTTCTCACCTGCCCTGGGAGCGTGCAGGTTGTGAATaGCACATGTGTCCTGGATGC | + |
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Preference number: 4 (lower is better) Translates to: LSRAWGQSVGPASHLPWERAGCE*HMCPGC Trigger: GCATCCAGGACACATGTGGCATTCACAACCTGCACG...CTCCCAGGGCAGGTGAGAAGCAGGCCCCACAGATTGCCCCCAAGCTCTGGAGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CCA 90 bp | ATGAGCATCATGACCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGTGTCCTGGATGCGATaGCGGGACTCCAGGAATGGC | + |
|
Preference number: 4 (lower is better) Translates to: MSIMTAGRDRPSAADPGLVSWMR*RDSRNG Trigger: GCCATTCCTGGAGTCCCGCCATCGCATCCAGGACAC...CAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGGTCATGATGCTCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | ATGACCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTCTGGATGCCGAAAGCTaGCAGCAGGAAGTTGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: MTAGRDRPSAADPGLELTLDAES*QQEVEA Trigger: GGCTTCAACTTCCTGCTGGCAGCTTTCGGCATCCAG...AGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGGTCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | CTTTCCGCTGCCCTGTCCCTGAGTTCCCAGATATGTCAGCCCCAGCTCTCTCCATCCCTGCATGAGCAGTaGCCACTGGATGCCGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: LSAALSLSSQICQPQLSPSLHEQ*PLDAES Trigger: GCTTTCGGCATCCAGTGGGCACTGCTCATGCAGGGA...TGGAGAGAGCTGGGGCTGACATATCTGGGAACTCAGGGACAGGGCAGCGGAAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR TCA 90 bp | GTCCCTGAGTTCCCAGATATGTCAGCCCCAGCTCTCTCCAGAGCTTGGGGGCAAGTCCGAGTGGTACACTaGGCTCTGTCTCTGCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: VPEFPDMSAPALSRAWGQVRVVH*ALSLLA Trigger: AGCAAGCAGAGACAGAGCTCAGTGTACCACTCGGAC...TTGCCCCCAAGCTCTGGAGAGAGCTGGGGCTGACATATCTGGGAACTCAGGGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR TCA 90 bp | GGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTCCGAAATGCCGTGCAGGTTGTaGATGCCACATGTGTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: GRDRPSAADPGLELTLSEMPCRL*MPHVSW Trigger: CCAGGACACATGTGGCATTCACAACCTGCACGGCAT...TTCGGACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | CTTCCCAACCCCCGGCCTCAGCTTCTCTTCATGCTACTTCTCACAGGCTATGAGTTGAGGGCTGCTCGGTaGTGGGCATCTCCGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LPNPRPQLLFMLLLTGYELRAAR*WASPWK Trigger: CTTCCACGGAGATGCCCAGCACCGAGCAGCCCTCAA...CTCATAGCCTGTGAGAAGTAGCATGAAGAGAAGCTGAGGCCGGGGGTTGGGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | AGCATCATGACCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTAGGGTGGAGAAAATaGCGCAGAAGAACCCCACGA | + |
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Preference number: 4 (lower is better) Translates to: SIMTAGRDRPSAADPGLELGWRK*RRRTPR Trigger: TCGTGGGGTTCTTCTGCGGCATTTTCTCCACCCTAG...CTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGGTCATGATGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CCA 90 bp | CCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTAGGAGGCCAAATATCTaGGACCTGCCCTGCATTCTC | + |
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Preference number: 4 (lower is better) Translates to: PQAGTDLLQLTLAWSSLCRRPNI*DLPCIL Trigger: GAGAATGCAGGGCAGGTCCCAGATATTTGGCCTCCT...ACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | GGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTCCGAAATCTGGGACCTGCCCTaGATTCTCTTGTTCCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: GRDRPSAADPGLELTLSEIWDLP*ILLFQS Trigger: GGACTGGAACAAGAGAATGCAGGGCAGGTCCCAGAT...TTCGGACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| 3UTR CAA 72 bp | GCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTaGGAGCTCACTTTGTCCGAATCTCCTCCATTCTCA | + |
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Preference number: 4 (lower is better) Translates to: AGRDRPSAADPG*ELTLSESPPFS Trigger: TGAGAATGGAGGAGATTCGGACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000172788.3 |
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| CDS-3UTR GCA 90 bp | CTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTCCGAATCTCCTCCATTCTCACACCCACCCCACCTaGAAGCGTGGCATTCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: LLQLTLAWSSLCPNLLHSHTHPT*KRGILD Trigger: ATCCAGAATGCCACGCTTGCAGGTGGGGTGGGTGTG...AGAATGGAGGAGATTCGGACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CCA 90 bp | GGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTCCGAATCTCTGCTGGGCATCTCCGTaGAAGGAACTGGCTGAATTG | + |
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Preference number: 4 (lower is better) Translates to: GTDLLQLTLAWSSLCPNLCWASP*KELAEL Trigger: CAATTCAGCCAGTTCCTTCCACGGAGATGCCCAGCA...GAGATTCGGACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | CTTCCCAACCCCCGGCCTCAGCTTCTCTTCATGCTACTTCTCACAGGCTATGAGCGCTGGAGATGTTCTTaGGCTTCTTCTCCAACCACC | + |
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Preference number: 4 (lower is better) Translates to: LPNPRPQLLFMLLLTGYERWRCS*ASSPTT Trigger: GGTGGTTGGAGAAGAAGCGCAAGAACATCTCCAGCG...CTCATAGCCTGTGAGAAGTAGCATGAAGAGAAGCTGAGGCCGGGGGTTGGGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | CTTCCCAACCCCCGGCCTCAGCTTCTCTTCATGCTACTTCTCACAGGCTATGAGTCCACAAGAAGAGGGTaGCAATCATGGCGAAAAGGT | + |
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Preference number: 4 (lower is better) Translates to: LPNPRPQLLFMLLLTGYESTRRG*QSWRKG Trigger: ACCTTTTCGCCATGATTGGCACCCTCTTCTTGTGGA...CTCATAGCCTGTGAGAAGTAGCATGAAGAGAAGCTGAGGCCGGGGGTTGGGAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | ACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTCCGAATCTCCTCCAAATATCTGGGACCTaGCCTGCATTCTCTTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: TDLLQLTLAWSSLCPNLLQISGT*PAFSCS Trigger: GGAACAAGAGAATGCAGGGCAGGTCCCAGATATTTG...GAGGAGATTCGGACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CCA 90 bp | CCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTTCTTGTGTACAATACTaGATACTGTCACTGTGGTTA | + |
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Preference number: 4 (lower is better) Translates to: PQAGTDLLQLTLAWSSLCSCVQY*ILSLWL Trigger: TAACCACAGTGACAGTATCCAGTATTGTACACAAGA...ACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CCA 90 bp | CTTCTCTTCATGCTACTTCTCACAGGCTATGAGCATCATGACCGCAGGCAGGGAGCAAGCGTGGCATTCTaGATGTGCACCATATCCAAC | + |
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Preference number: 4 (lower is better) Translates to: LLFMLLLTGYEHHDRRQGASVAF*MCTISN Trigger: GTTGGATATGGTGCACATCCAGAATGCCACGCTTGC...TCCCTGCCTGCGGTCATGATGCTCATAGCCTGTGAGAAGTAGCATGAAGAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | CCTCAGCTTCTCTTCATGCTACTTCTCACAGGCTATGAGCATCATGACCGCAGGAAGTACCAAGGGCATTaGAGGTACCAGAGAAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: PQLLFMLLLTGYEHHDRRKYQGH*RYQRSR Trigger: TCTACTTCTCTGGTACCTGCAATGCCCTTGGTACTT...CCTGCGGTCATGATGCTCATAGCCTGTGAGAAGTAGCATGAAGAGAAGCTGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CCA 90 bp | CAGCTTCTCTTCATGCTACTTCTCACAGGCTATGAGCATCATGACCGCAGGCAGGAACCTCCCAGTAGATaGAATCCTCAAAACAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: QLLFMLLLTGYEHHDRRQEPPSR*NPQNSS Trigger: AGAACTGTTTTGAGGATTCCATCTACTGGGAGGTTC...CTGCCTGCGGTCATGATGCTCATAGCCTGTGAGAAGTAGCATGAAGAGAAGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CCA 90 bp | CATCAACAACATTTATTTACTACACAAAATAGAGTGATCTTGGGTGCCTTGGAAATGCCACATGTGTCCTaGATGCGATGGCGGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: HQQHLFTTQNRVILGALEMPHVS*MRWRDS Trigger: GGAGTCCCGCCATCGCATCCAGGACACATGTGGCAT...TTCCAAGGCACCCAAGATCACTCTATTTTGTGTAGTAAATAAATGTTGTTGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR GCA 90 bp | GAGCATCAACAACATTTATTTACTACACAAAATAGAGTGATCTTGGGTGCCTTGGGCCACACAGGAAGATaGCACACAGAAGTCAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: EHQQHLFTTQNRVILGALGHTGR*HTEVSL Trigger: CAAGCTGACTTCTGTGTGGCATCTTCCTGTGTGGCC...CAAGGCACCCAAGATCACTCTATTTTGTGTAGTAAATAAATGTTGTTGATGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| 3UTR CAA 72 bp | TTATTTACTACACAAAATAGAGTGATCTTGGGTGCCTaGGAACATGGGAAATACATTGTTGGGGAGCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: LFTTQNRVILGA*EHGKYIVGEQA Trigger: CGCCTGCTCCCCAACAATGTATTTCCCATGTTCCAAGGCACCCAAGATCACTCTATTTTGTGTAGTAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000172788.3 |
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| CDS-3UTR GCA 90 bp | CAACAACATTTATTTACTACACAAAATAGAGTGATCTTGGGTGCCTTGGAACATAAAACAGTTCTCATCTaGAGCTTGTCCCCAGAACGG | + |
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Preference number: 4 (lower is better) Translates to: QQHLFTTQNRVILGALEHKTVLI*SLSPER Trigger: CCGTTCTGGGGACAAGCTGCAGATGAGAACTGTTTT...ATGTTCCAAGGCACCCAAGATCACTCTATTTTGTGTAGTAAATAAATGTTGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CAA 90 bp | CCGCAGGCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTCCAGTGAGCATCGGCTaGGATGTCGTAGCGCACGAA | + |
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Preference number: 5 (lower is better) Translates to: PQAGTDLLQLTLAWSSLCPVSIG*DVVAHE Trigger: TTCGTGCGCTACGACATCCAAGCCGATGCTCACTGG...ACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGCCTGCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CAA 90 bp | CTTTCCGCTGCCCTGTCCCTGAGTTCCCAGATATGTCAGCCCCAGCTCTCTCCAGCTGCCAGCAGGAAGTaGAAGCCTACAGCGCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: LSAALSLSSQICQPQLSPAASRK*KPTALK Trigger: CTTCAGCGCTGTAGGCTTCAACTTCCTGCTGGCAGC...TGGAGAGAGCTGGGGCTGACATATCTGGGAACTCAGGGACAGGGCAGCGGAAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS TCA 90 bp | GCACCCACAATGCCGCCTATGATGCCAGGAATGCCGTGCAGGTTGTaGATGCCACATGTGTCCTGGATGCGATGGCGGGACTCCAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: APTMPPMMPGMPCRL*MPHVSWMRWRDSRN Trigger: ATTCCTGGAGTCCCGCCATCGCATCCAGGACACATGTGGCATTCACAACCTGCACGGCATTCCTGGCATCATAGGCGGCATTGTGGGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS TCA 90 bp | CAGGGGAGGAGTAAGCCGCTGTCACAGCACCCACAATGCCGCCTATaGTGCCAGGAATGCCGTGCAGGTTGTGAATGCCACATGTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: QGRSKPLSQHPQCRL*CQECRAGCECHMCP Trigger: AGGACACATGTGGCATTCACAACCTGCACGGCATTCCTGGCATCATAGGCGGCATTGTGGGTGCTGTGACAGCGGCTTACTCCTCCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS GCA 90 bp | CCAGGGCCATGGCCAGGCTCAGGAGGAGGCCAAATATCTGGGACCTaGCCTGCATTCTCTTGTTCCAGTCCATCTTATAACTCCCGAAGC | + |
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Preference number: 5 (lower is better) Translates to: PGPWPGSGGGQISGT*PAFSCSSPSYNSRS Trigger: GCTTCGGGAGTTATAAGATGGACTGGAACAAGAGAATGCAGGGCAGGTCCCAGATATTTGGCCTCCTCCTGAGCCTGGCCATGGCCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS GCA 90 bp | TGCCAGGAATGCCGTGCAGGTTGTGAATGCCACATGTGTCCTGGATaGGATGGCGGGACTCCAGGAATGGCGTTAGGTATGCAAATCCTA | + |
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Preference number: 5 (lower is better) Translates to: CQECRAGCECHMCPG*DGGTPGMALGMQIL Trigger: TAGGATTTGCATACCTAACGCCATTCCTGGAGTCCCGCCATCGCATCCAGGACACATGTGGCATTCACAACCTGCACGGCATTCCTGGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CCA 90 bp | CCAGTCCATCTTATAACTCCCGAAGCCGAAGGAATGGACTATCCCTaGCTCTCCATACACATCAGGGGAGGAGTAAGCCGCTGTCACAGC | + |
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Preference number: 5 (lower is better) Translates to: PVHLITPEAEGMDYP*LSIHIRGGVSRCHS Trigger: GCTGTGACAGCGGCTTACTCCTCCCCTGATGTGTATGGAGAGCCAGGGATAGTCCATTCCTTCGGCTTCGGGAGTTATAAGATGGACTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CCA 90 bp | CCTGGAAGCTCGGGTAGCGATAGTAAAACTCGTTCTCAACGTCGCTaGAGATGTTCTTGCGCTTCTTCTCCAACCACCAGTGAGCATCGG | + |
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Preference number: 5 (lower is better) Translates to: PGSSGSDSKTRSQRR*RCSCASSPTTSEHR Trigger: CCGATGCTCACTGGTGGTTGGAGAAGAAGCGCAAGAACATCTCCAGCGACGTTGAGAACGAGTTTTACTATCGCTACCCGAGCTTCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CCA 90 bp | ACTGCCCCGAAGGCCACACAGGAAGATGCCACACAGAAGTCAGCTTaGATGATGTTCTCGACGCTCAGGACAATGTGGCCTTCTTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: TAPKATQEDATQKSA*MMFSTLRTMWPSSK Trigger: CTTTGAAGAAGGCCACATTGTCCTGAGCGTCGAGAACATCATCCAAGCTGACTTCTGTGTGGCATCTTCCTGTGTGGCCTTCGGGGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS-3UTR CAA 90 bp | AGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTCCGAATCTGTTCTCATCTGCAGCTaGTCCCCAGAACGGCAATTT | + |
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Preference number: 5 (lower is better) Translates to: RDRPSAADPGLELTLSESVLICS*SPERQF Trigger: AAATTGCCGTTCTGGGGACAAGCTGCAGATGAGAAC...AGATTCGGACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS GCA 90 bp | AATGTGGCCTTCTTCAAAGTAATGGAACCATCCCTGCATGAGCAGTaGCCACTGGATGCCGAAAGCTGCCAGCAGGAAGTTGAAGCCTAC | + |
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Preference number: 5 (lower is better) Translates to: NVAFFKVMEPSLHEQ*PLDAESCQQEVEAY Trigger: GTAGGCTTCAACTTCCTGCTGGCAGCTTTCGGCATCCAGTGGGCACTGCTCATGCAGGGATGGTTCCATTACTTTGAAGAAGGCCACATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS GCA 90 bp | TTCACTGTAAAGAGAGTCACTTGGAAGAAGGTCATAATGAGCAGCTaGATCGGGCTGACCTTGCCTAGAACTGCCCCGAAGGCCACACAG | + |
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Preference number: 5 (lower is better) Translates to: FTVKRVTWKKVIMSS*IGLTLPRTAPKATQ Trigger: CTGTGTGGCCTTCGGGGCAGTTCTAGGCAAGGTCAGCCCGATGCAGCTGCTCATTATGACCTTCTTCCAAGTGACTCTCTTTACAGTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS-3UTR CAA 90 bp | CAGCTTCTCTTCATGCTACTTCTCACAGGCTATGAGCATCATGACCGCAGGCAGAACCACCATGGTCACTaGCAGGATCAGGCAGGTGAT | + |
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Preference number: 5 (lower is better) Translates to: QLLFMLLLTGYEHHDRRQNHHGH*QDQAGD Trigger: ATCACCTGCCTGATCCTGCAAGTGACCATGGTGGTT...CTGCCTGCGGTCATGATGCTCATAGCCTGTGAGAAGTAGCATGAAGAGAAGCTG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CAA 90 bp | GCAGGGACAGACCTTCTGCAGCTGACCCTGGCTTGGAGCTCACTTTGTCCGAATAAGGAACTGGCTGAATaGAAACTGGGCCAGTATATC | + |
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Preference number: 5 (lower is better) Translates to: AGTDLLQLTLAWSSLCPNKELAE*KLGQYI Trigger: GATATACTGGCCCAGTTTCAATTCAGCCAGTTCCTT...ATTCGGACAAAGTGAGCTCCAAGCCAGGGTCAGCTGCAGAAGGTCTGTCCCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS-3UTR CAA 90 bp | CTTTCCGCTGCCCTGTCCCTGAGTTCCCAGATATGTCAGCCCCAGCTCTCTCCATGCACCATATCCAACTaGCCCTTCTTGTGTACAATA | + |
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Preference number: 5 (lower is better) Translates to: LSAALSLSSQICQPQLSPCTISN*PFLCTI Trigger: TATTGTACACAAGAAGGGCAAGTTGGATATGGTGCA...TGGAGAGAGCTGGGGCTGACATATCTGGGAACTCAGGGACAGGGCAGCGGAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS TCA 90 bp | CCCCGAAGGCCACACAGGAAGATGCCACACAGAAGTCAGCTTGGATaGTGTTCTCGACGCTCAGGACAATGTGGCCTTCTTCAAAGTAAT | + |
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Preference number: 5 (lower is better) Translates to: PRRPHRKMPHRSQLG*CSRRSGQCGLLQSN Trigger: ATTACTTTGAAGAAGGCCACATTGTCCTGAGCGTCGAGAACATCATCCAAGCTGACTTCTGTGTGGCATCTTCCTGTGTGGCCTTCGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS GCA 90 bp | GGTAGCGATAGTAAAACTCGTTCTCAACGTCGCTGGAGATGTTCTTaGGCTTCTTCTCCAACCACCAGTGAGCATCGGCTTGGATGTCGT | + |
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Preference number: 5 (lower is better) Translates to: GSDSKTRSQRRWRCS*ASSPTTSEHRLGCR Trigger: ACGACATCCAAGCCGATGCTCACTGGTGGTTGGAGAAGAAGCGCAAGAACATCTCCAGCGACGTTGAGAACGAGTTTTACTATCGCTACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS GCA 90 bp | CCCCACCTGCAAGCGTGGCATTCTGGATGTGCACCATATCCAACTTaGCCTTCTTGTGTACAATACTGGATACTGTCACTGTGGTTAGCA | + |
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Preference number: 5 (lower is better) Translates to: PHLQAWHSGCAPYPT*PSCVQYWILSLWLA Trigger: TGCTAACCACAGTGACAGTATCCAGTATTGTACACAAGAAGGGCAAGTTGGATATGGTGCACATCCAGAATGCCACGCTTGCAGGTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CCA 90 bp | TCTGGATGTGCACCATATCCAACTTGCCCTTCTTGTGTACAATACTaGATACTGTCACTGTGGTTAGCACACTCGCTGCCAAGGAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: SGCAPYPTCPSCVQY*ILSLWLAHSLPRRG Trigger: ACCTCTCCTTGGCAGCGAGTGTGCTAACCACAGTGACAGTATCCAGTATTGTACACAAGAAGGGCAAGTTGGATATGGTGCACATCCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS TCA 72 bp | AGAGAACCACCATGGTCACTTGCAGGATCAGGCAGGTaGTGGGCAGCCGCCCCCGAAGGTTGGTGTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: REPPWSLAGSGR*WAAAPEGWCSR Trigger: CCTGGAACACCAACCTTCGGGGGCGGCTGCCCATCACCTGCCTGATCCTGCAAGTGACCATGGTGGTTCTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CAA 90 bp | GATGTCGTAGCGCACGAACACGCCAAAGAGAACCACCATGGTCACTaGCAGGATCAGGCAGGTGATGGGCAGCCGCCCCCGAAGGTTGGT | + |
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Preference number: 6 (lower is better) Translates to: DVVAHEHAKENHHGH*QDQAGDGQPPPKVG Trigger: ACCAACCTTCGGGGGCGGCTGCCCATCACCTGCCTGATCCTGCAAGTGACCATGGTGGTTCTCTTTGGCGTGTTCGTGCGCTACGACATC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS TCA 72 bp | AGTAAGCCGCTGTCACAGCACCCACAATGCCGCCTATaGTGCCAGGAATGCCGTGCAGGTTGTGAATGCCAC | + |
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Preference number: 6 (lower is better) Translates to: SKPLSQHPQCRL*CQECRAGCECH Trigger: GTGGCATTCACAACCTGCACGGCATTCCTGGCATCATAGGCGGCATTGTGGGTGCTGTGACAGCGGCTTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS GCA 72 bp | TGCCGTGCAGGTTGTGAATGCCACATGTGTCCTGGATaGGATGGCGGGACTCCAGGAATGGCGTTAGGTATG | + |
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Preference number: 6 (lower is better) Translates to: CRAGCECHMCPG*DGGTPGMALGM Trigger: CATACCTAACGCCATTCCTGGAGTCCCGCCATCGCATCCAGGACACATGTGGCATTCACAACCTGCACGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CAA 90 bp | GTCACTTGGAAGAAGGTCATAATGAGCAGCTGCATCGGGCTGACCTaGCCTAGAACTGCCCCGAAGGCCACACAGGAAGATGCCACACAG | + |
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Preference number: 6 (lower is better) Translates to: VTWKKVIMSSCIGLT*PRTAPKATQEDATQ Trigger: CTGTGTGGCATCTTCCTGTGTGGCCTTCGGGGCAGTTCTAGGCAAGGTCAGCCCGATGCAGCTGCTCATTATGACCTTCTTCCAAGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS CAA 72 bp | CTTGCGCTTCTTCTCCAACCACCAGTGAGCATCGGCTaGGATGTCGTAGCGCACGAACACGCCAAAGAGAAC | + |
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Preference number: 6 (lower is better) Translates to: LALLLQPPVSIG*DVVAHEHAKEN Trigger: GTTCTCTTTGGCGTGTTCGTGCGCTACGACATCCAAGCCGATGCTCACTGGTGGTTGGAGAAGAAGCGCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CAA 90 bp | GGAGATGTTCTTGCGCTTCTTCTCCAACCACCAGTGAGCATCGGCTaGGATGTCGTAGCGCACGAACACGCCAAAGAGAACCACCATGGT | + |
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Preference number: 6 (lower is better) Translates to: GDVLALLLQPPVSIG*DVVAHEHAKENHHG Trigger: ACCATGGTGGTTCTCTTTGGCGTGTTCGTGCGCTACGACATCCAAGCCGATGCTCACTGGTGGTTGGAGAAGAAGCGCAAGAACATCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS TCA 72 bp | TGTGGCCTTCTTCAAAGTAATGGAACCATCCCTGCATaGGCAGTGCCCACTGGATGCCGAAAGCTGCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: CGLLQSNGTIPA*AVPTGCRKLPA Trigger: TGCTGGCAGCTTTCGGCATCCAGTGGGCACTGCTCATGCAGGGATGGTTCCATTACTTTGAAGAAGGCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CAA 72 bp | GAAGGCCACACAGGAAGATGCCACACAGAAGTCAGCTaGGATGATGTTCTCGACGCTCAGGACAATGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: EGHTGRCHTEVS*DDVLDAQDNVA Trigger: GGCCACATTGTCCTGAGCGTCGAGAACATCATCCAAGCTGACTTCTGTGTGGCATCTTCCTGTGTGGCCTTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS CAA 72 bp | AAGAAGGTCATAATGAGCAGCTGCATCGGGCTGACCTaGCCTAGAACTGCCCCGAAGGCCACACAGGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: KKVIMSSCIGLT*PRTAPKATQED Trigger: ATCTTCCTGTGTGGCCTTCGGGGCAGTTCTAGGCAAGGTCAGCCCGATGCAGCTGCTCATTATGACCTTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS GCA 72 bp | AAGAGAGTCACTTGGAAGAAGGTCATAATGAGCAGCTaGATCGGGCTGACCTTGCCTAGAACTGCCCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: KRVTWKKVIMSS*IGLTLPRTAPK Trigger: CTTCGGGGCAGTTCTAGGCAAGGTCAGCCCGATGCAGCTGCTCATTATGACCTTCTTCCAAGTGACTCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS GCA 72 bp | GTAGGCGCCAAATGTGTGGATGGTCATAGAGCCCCCTaGATCCTTTGCCTCTATCAGGTTCAGGAGGATGAA | + |
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Preference number: 6 (lower is better) Translates to: VGAKCVDGHRAP*ILCLYQVQEDE Trigger: TTCATCCTCCTGAACCTGATAGAGGCAAAGGATGCAGGGGGCTCTATGACCATCCACACATTTGGCGCCTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS GCA 72 bp | TGGCCAGGCTCAGGAGGAGGCCAAATATCTGGGACCTaGCCTGCATTCTCTTGTTCCAGTCCATCTTATAAC | + |
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Preference number: 6 (lower is better) Translates to: WPGSGGGQISGT*PAFSCSSPSYN Trigger: GTTATAAGATGGACTGGAACAAGAGAATGCAGGGCAGGTCCCAGATATTTGGCCTCCTCCTGAGCCTGGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CCA 72 bp | AAGGCCACACAGGAAGATGCCACACAGAAGTCAGCTTaGATGATGTTCTCGACGCTCAGGACAATGTGGCCT | + |
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Preference number: 6 (lower is better) Translates to: KATQEDATQKSA*MMFSTLRTMWP Trigger: AGGCCACATTGTCCTGAGCGTCGAGAACATCATCCAAGCTGACTTCTGTGTGGCATCTTCCTGTGTGGCCTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS CAA 90 bp | AACTGCCCCGAAGGCCACACAGGAAGATGCCACACAGAAGTCAGCTaGGATGATGTTCTCGACGCTCAGGACAATGTGGCCTTCTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: NCPEGHTGRCHTEVS*DDVLDAQDNVAFFK Trigger: TTTGAAGAAGGCCACATTGTCCTGAGCGTCGAGAACATCATCCAAGCTGACTTCTGTGTGGCATCTTCCTGTGTGGCCTTCGGGGCAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS TCA 72 bp | CCACACAGGAAGATGCCACACAGAAGTCAGCTTGGATaGTGTTCTCGACGCTCAGGACAATGTGGCCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: PHRKMPHRSQLG*CSRRSGQCGLL Trigger: AAGAAGGCCACATTGTCCTGAGCGTCGAGAACATCATCCAAGCTGACTTCTGTGTGGCATCTTCCTGTGTGG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032766.5 ENSMUST00000161084.3 |
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| CDS GCA 72 bp | TTCTTCAAAGTAATGGAACCATCCCTGCATGAGCAGTaGCCACTGGATGCCGAAAGCTGCCAGCAGGAAGTT | + |
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Preference number: 6 (lower is better) Translates to: FFKVMEPSLHEQ*PLDAESCQQEV Trigger: AACTTCCTGCTGGCAGCTTTCGGCATCCAGTGGGCACTGCTCATGCAGGGATGGTTCCATTACTTTGAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS GCA 72 bp | AGTAAAACTCGTTCTCAACGTCGCTGGAGATGTTCTTaGGCTTCTTCTCCAACCACCAGTGAGCATCGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: SKTRSQRRWRCS*ASSPTTSEHRL Trigger: AAGCCGATGCTCACTGGTGGTTGGAGAAGAAGCGCAAGAACATCTCCAGCGACGTTGAGAACGAGTTTTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CCA 72 bp | TCGGGTAGCGATAGTAAAACTCGTTCTCAACGTCGCTaGAGATGTTCTTGCGCTTCTTCTCCAACCACCAGT | + |
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Preference number: 6 (lower is better) Translates to: SGSDSKTRSQRR*RCSCASSPTTS Trigger: ACTGGTGGTTGGAGAAGAAGCGCAAGAACATCTCCAGCGACGTTGAGAACGAGTTTTACTATCGCTACCCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CCA 72 bp | TGCCCTTCTTGTGTACAATACTGGATACTGTCACTGTaGTTAGCACACTCGCTGCCAAGGAGAGGTAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: CPSCVQYWILSL*LAHSLPRRGRY Trigger: ATACCTACCTCTCCTTGGCAGCGAGTGTGCTAACCACAGTGACAGTATCCAGTATTGTACACAAGAAGGGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CCA 72 bp | GCACCATATCCAACTTGCCCTTCTTGTGTACAATACTaGATACTGTCACTGTGGTTAGCACACTCGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: APYPTCPSCVQY*ILSLWLAHSLP Trigger: TGGCAGCGAGTGTGCTAACCACAGTGACAGTATCCAGTATTGTACACAAGAAGGGCAAGTTGGATATGGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS GCA 72 bp | CAAGCGTGGCATTCTGGATGTGCACCATATCCAACTTaGCCTTCTTGTGTACAATACTGGATACTGTCACTG | + |
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Preference number: 6 (lower is better) Translates to: QAWHSGCAPYPT*PSCVQYWILSL Trigger: CAGTGACAGTATCCAGTATTGTACACAAGAAGGGCAAGTTGGATATGGTGCACATCCAGAATGCCACGCTTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CCA 72 bp | AGGAGGATGAACTCATTCACTGTAAAGAGAGTCACTTaGAAGAAGGTCATAATGAGCAGCTGCATCGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RRMNSFTVKRVT*KKVIMSSCIGL Trigger: CAGCCCGATGCAGCTGCTCATTATGACCTTCTTCCAAGTGACTCTCTTTACAGTGAATGAGTTCATCCTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CAA 72 bp | CAGGAGGATGAACTCATTCACTGTAAAGAGAGTCACTaGGAAGAAGGTCATAATGAGCAGCTGCATCGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: QEDELIHCKESH*EEGHNEQLHRA Trigger: AGCCCGATGCAGCTGCTCATTATGACCTTCTTCCAAGTGACTCTCTTTACAGTGAATGAGTTCATCCTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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| CDS CAA 72 bp | GCATTCTGGATGTGCACCATATCCAACTTGCCCTTCTaGTGTACAATACTGGATACTGTCACTGTGGTTAGC | + |
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Preference number: 6 (lower is better) Translates to: AFWMCTISNLPF*CTILDTVTVVS Trigger: GCTAACCACAGTGACAGTATCCAGTATTGTACACAAGAAGGGCAAGTTGGATATGGTGCACATCCAGAATGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032766.5 |
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