Pregenerated sensors for RHBDL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043333

Ensembl transcript IDs: ENSMUST00000053202.12, ENSMUST00000106204.2

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 72 bp	TGTAGACCAGGCTGGCCTCAAGCTCAGAAATCCGCCTaGCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTG	+
Preference number: 3 (lower is better) Translates to: CRPGWPQAQKSA*LCLPSAGIKGV Trigger: CACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGCTTGAGGCCAGCCTGGTCTACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS GCA 90 bp	CGGAGGCCTTTGTGGACCATTTCCAAAGGAATACCCAGGACGATCTaGATAAGAAGATTCCCCACGATGTGCTGGACTCCGGCATGGACC	+
Preference number: 5 (lower is better) Translates to: RRPLWTISKGIPRTI*IRRFPTMCWTPAWT Trigger: GGTCCATGCCGGAGTCCAGCACATCGTGGGGAATCTTCTTATGCAGATCGTCCTGGGTATTCCTTTGGAAATGGTCCACAAAGGCCTCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CCA 90 bp	GCAAGCACTCCTGCCAGGTACACCAGCCCCACTCGGAGGCCTTTGTaGACCATTTCCAAAGGAATACCCAGGACGATCTGCATAAGAAGA	+
Preference number: 5 (lower is better) Translates to: ASTPARYTSPTRRPL*TISKGIPRTICIRR Trigger: TCTTCTTATGCAGATCGTCCTGGGTATTCCTTTGGAAATGGTCCACAAAGGCCTCCGAGTGGGGCTGGTGTACCTGGCAGGAGTGCTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS GCA 90 bp	GCAGCTGAACACAGTGTAACCTATGGACATCCCAGCAAATCCACCTaGAATGTGAGCAGCAAAGGACACCGGAGACCCATTTGCAGGGAC	+
Preference number: 5 (lower is better) Translates to: AAEHSVTYGHPSKST*NVSSKGHRRPICRD Trigger: GTCCCTGCAAATGGGTCTCCGGTGTCCTTTGCTGCTCACATTGCAGGTGGATTTGCTGGGATGTCCATAGGTTACACTGTGTTCAGCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CCA 90 bp	CTCTCTCTAAGTATGTTCTTCGGACTGGCTCAGGAAGCATCCACTTaGAGACGATCCTGTGGACCTTTCTGCTCCTGGGGAAGTCTTTAC	+
Preference number: 5 (lower is better) Translates to: LSLSMFFGLAQEAST*RRSCGPFCSWGSLY Trigger: GTAAAGACTTCCCCAGGAGCAGAAAGGTCCACAGGATCGTCTCCAAGTGGATGCTTCCTGAGCCAGTCCGAAGAACATACTTAGAGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS GCA 90 bp	CTGGCTCAGGAAGCATCCACTTGGAGACGATCCTGTGGACCTTTCTaGTCCTGGGGAAGTCTTTACCTTCTCCATTCCCTTTCATTTTCT	+
Preference number: 5 (lower is better) Translates to: LAQEASTWRRSCGPF*SWGSLYLLHSLSFS Trigger: AGAAAATGAAAGGGAATGGAGAAGGTAAAGACTTCCCCAGGAGCAGAAAGGTCCACAGGATCGTCTCCAAGTGGATGCTTCCTGAGCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CCA 90 bp	CAGGAAGCATCCACTTGGAGACGATCCTGTGGACCTTTCTGCTCCTaGGGAAGTCTTTACCTTCTCCATTCCCTTTCATTTTCTCCTCCT	+
Preference number: 5 (lower is better) Translates to: QEASTWRRSCGPFCS*GSLYLLHSLSFSPP Trigger: AGGAGGAGAAAATGAAAGGGAATGGAGAAGGTAAAGACTTCCCCAGGAGCAGAAAGGTCCACAGGATCGTCTCCAAGTGGATGCTTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS TCA 90 bp	TATAACATTCATAAAATATCCTCCCATCAATGCATAGACTCCTCCTaGAGCTCCCACAAGAGACTTGAGGGGGTCAAAGATGGAGCTGGC	+
Preference number: 5 (lower is better) Translates to: YNIHKISSHQCIDSS*SSHKRLEGVKDGAG Trigger: GCCAGCTCCATCTTTGACCCCCTCAAGTCTCTTGTGGGAGCTTCAGGAGGAGTCTATGCATTGATGGGAGGATATTTTATGAATGTTATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS GCA 72 bp	AAAGATGGAGCTGGCCAGGGAACCTGCAAGCACTCCTaGCAGGTACACCAGCCCCACTCGGAGGCCTTTGTG	+
Preference number: 6 (lower is better) Translates to: KDGAGQGTCKHS*QVHQPHSEAFV Trigger: CACAAAGGCCTCCGAGTGGGGCTGGTGTACCTGGCAGGAGTGCTTGCAGGTTCCCTGGCCAGCTCCATCTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CCA 72 bp	CCTGCCAGGTACACCAGCCCCACTCGGAGGCCTTTGTaGACCATTTCCAAAGGAATACCCAGGACGATCTGC	+
Preference number: 6 (lower is better) Translates to: PARYTSPTRRPL*TISKGIPRTIC Trigger: GCAGATCGTCCTGGGTATTCCTTTGGAAATGGTCCACAAAGGCCTCCGAGTGGGGCTGGTGTACCTGGCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CAA 72 bp	ACTCCTGCCAGGTACACCAGCCCCACTCGGAGGCCTTaGTGGACCATTTCCAAAGGAATACCCAGGACGATC	+
Preference number: 6 (lower is better) Translates to: TPARYTSPTRRP*WTISKGIPRTI Trigger: GATCGTCCTGGGTATTCCTTTGGAAATGGTCCACAAAGGCCTCCGAGTGGGGCTGGTGTACCTGGCAGGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CAA 90 bp	CCTGCAAGCACTCCTGCCAGGTACACCAGCCCCACTCGGAGGCCTTaGTGGACCATTTCCAAAGGAATACCCAGGACGATCTGCATAAGA	+
Preference number: 6 (lower is better) Translates to: PASTPARYTSPTRRP*WTISKGIPRTICIR Trigger: TCTTATGCAGATCGTCCTGGGTATTCCTTTGGAAATGGTCCACAAAGGCCTCCGAGTGGGGCTGGTGTACCTGGCAGGAGTGCTTGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS TCA 72 bp	ACGTCAAGGGACTTTCCAAGATCCCCGTGTCCAGGGTaGTCCACTGCTTCTGTGGCTTCCACACCGCATAAT	+
Preference number: 6 (lower is better) Translates to: TSRDFPRSPCPG*STASVASTPHN Trigger: ATTATGCGGTGTGGAAGCCACAGAAGCAGTGGATCACCCTGGACACGGGGATCTTGGAAAGTCCCTTGACGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CCA 72 bp	AGTATGTTCTTCGGACTGGCTCAGGAAGCATCCACTTaGAGACGATCCTGTGGACCTTTCTGCTCCTGGGGA	+
Preference number: 6 (lower is better) Translates to: SMFFGLAQEAST*RRSCGPFCSWG Trigger: TCCCCAGGAGCAGAAAGGTCCACAGGATCGTCTCCAAGTGGATGCTTCCTGAGCCAGTCCGAAGAACATACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CAA 72 bp	AAGTATGTTCTTCGGACTGGCTCAGGAAGCATCCACTaGGAGACGATCCTGTGGACCTTTCTGCTCCTGGGG	+
Preference number: 6 (lower is better) Translates to: KYVLRTGSGSIH*ETILWTFLLLG Trigger: CCCCAGGAGCAGAAAGGTCCACAGGATCGTCTCCAAGTGGATGCTTCCTGAGCCAGTCCGAAGAACATACTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CCA 72 bp	ACTGGCTCAGGAAGCATCCACTTGGAGACGATCCTGTaGACCTTTCTGCTCCTGGGGAAGTCTTTACCTTCT	+
Preference number: 6 (lower is better) Translates to: TGSGSIHLETIL*TFLLLGKSLPS Trigger: AGAAGGTAAAGACTTCCCCAGGAGCAGAAAGGTCCACAGGATCGTCTCCAAGTGGATGCTTCCTGAGCCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CAA 90 bp	GCTCTCTCTAAGTATGTTCTTCGGACTGGCTCAGGAAGCATCCACTaGGAGACGATCCTGTGGACCTTTCTGCTCCTGGGGAAGTCTTTA	+
Preference number: 6 (lower is better) Translates to: ALSKYVLRTGSGSIH*ETILWTFLLLGKSL Trigger: TAAAGACTTCCCCAGGAGCAGAAAGGTCCACAGGATCGTCTCCAAGTGGATGCTTCCTGAGCCAGTCCGAAGAACATACTTAGAGAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS GCA 72 bp	CACAGTGTAACCTATGGACATCCCAGCAAATCCACCTaGAATGTGAGCAGCAAAGGACACCGGAGACCCATT	+
Preference number: 6 (lower is better) Translates to: HSVTYGHPSKST*NVSSKGHRRPI Trigger: AATGGGTCTCCGGTGTCCTTTGCTGCTCACATTGCAGGTGGATTTGCTGGGATGTCCATAGGTTACACTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS GCA 72 bp	TTGTGGACCATTTCCAAAGGAATACCCAGGACGATCTaGATAAGAAGATTCCCCACGATGTGCTGGACTCCG	+
Preference number: 6 (lower is better) Translates to: LWTISKGIPRTI*IRRFPTMCWTP Trigger: CGGAGTCCAGCACATCGTGGGGAATCTTCTTATGCAGATCGTCCTGGGTATTCCTTTGGAAATGGTCCACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CAA 72 bp	ACATATGCAGCAATTGCGATCCAGAACCTGGGGTCTTaGAGCAGGGTCTTGTCAAAGCAGCTGAACACAGTG	+
Preference number: 6 (lower is better) Translates to: TYAAIAIQNLGS*SRVLSKQLNTV Trigger: CACTGTGTTCAGCTGCTTTGACAAGACCCTGCTCAAAGACCCCAGGTTCTGGATCGCAATTGCTGCATATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS GCA 72 bp	TGCAATGTGAGCAGCAAAGGACACCGGAGACCCATTTaGAGGGACAAAGAATCTTCTGTAGAGAGCAAATCC	+
Preference number: 6 (lower is better) Translates to: CNVSSKGHRRPI*RDKESSVESKS Trigger: GGATTTGCTCTCTACAGAAGATTCTTTGTCCCTGCAAATGGGTCTCCGGTGTCCTTTGCTGCTCACATTGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS CAA 72 bp	CTGCAATGTGAGCAGCAAAGGACACCGGAGACCCATTaGCAGGGACAAAGAATCTTCTGTAGAGAGCAAATC	+
Preference number: 6 (lower is better) Translates to: LQCEQQRTPETH*QGQRIFCREQI Trigger: GATTTGCTCTCTACAGAAGATTCTTTGTCCCTGCAAATGGGTCTCCGGTGTCCTTTGCTGCTCACATTGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2
CDS TCA 72 bp	CATAAAATATCCTCCCATCAATGCATAGACTCCTCCTaGAGCTCCCACAAGAGACTTGAGGGGGTCAAAGAT	+
Preference number: 6 (lower is better) Translates to: HKISSHQCIDSS*SSHKRLEGVKD Trigger: ATCTTTGACCCCCTCAAGTCTCTTGTGGGAGCTTCAGGAGGAGTCTATGCATTGATGGGAGGATATTTTATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053202.12 ENSMUST00000106204.2