Pregenerated sensors for RHBDD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034175Ensembl transcript IDs: ENSMUST00000036320.12, ENSMUST00000101610.10, ENSMUST00000109878.9, ENSMUST00000134267.8, ENSMUST00000148761.8
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTaGGGCCTAGTCCTACCCCAGGGATGCAGTCAAGAC | + |
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Preference number: 3 (lower is better) Translates to: QLLFLQSTRETC*GLVLPQGCSQD Trigger: GTCTTGACTGCATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGACAGGGCCCGGGACAGTaGGCCAGGGGCCTCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGQGPGQ*ARGLPG Trigger: GCCTGGGAGGCCCCTGGCTCACTGTCCCGGGCCCTG...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | TCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCAGGGCCCGGGACAGTaGGCCAGGGGCCTCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SAFILTKYQGNMLGPSPTQGPGQ*ARGLPG Trigger: GCCTGGGAGGCCCCTGGCTCACTGTCCCGGGCCCTG...GGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGCCCAGATGGCACTCCTaGCACCAGCCCAGAGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMPRWHS*HQPRVG Trigger: GCCCACTCTGGGCTGGTGGCAGGAGTGCCATCTGGG...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGGCTCAGGAGCAGGCCTaGCAGTGCAGTGTGGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMAQEQA*QCSVAQ Trigger: CTGGGCCACACTGCACTGCCAGGCCTGCTCCTGAGC...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGAGGCCCCAGGCGTGGTaGGAGCTGAGCAGAGCCATC | + |
|
Preference number: 4 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMRPQAW*ELSRAI Trigger: GATGGCTCTGCTCAGCTCCCACCACGCCTGGGGCCT...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATCCAGGCCCCAGGCGTaGTGGGAGCTGAGCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGSRPQA*WELSRA Trigger: GGCTCTGCTCAGCTCCCACCACGCCTGGGGCCTGGA...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | AAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTCAGGGCCCGGGACAGTaGGCCAGGGGCCTCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: KSAFILTKYQGNMLGPSPQGPGQ*ARGLPG Trigger: GCCTGGGAGGCCCCTGGCTCACTGTCCCGGGCCCTG...AGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGACGCACAGTGCCCAGATaGCACTCCTGCCACCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGRTVPR*HSCHQP Trigger: GGGCTGGTGGCAGGAGTGCCATCTGGGCACTGTGCG...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCTCCAGGCCCCAGGCGTaGTGGGAGCTGAGCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPSRPQA*WELSRA Trigger: GGCTCTGCTCAGCTCCCACCACGCCTGGGGCCTGGA...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCCCAGATGGCACTCCTaGCACCAGCCCAGAGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPPRWHS*HQPRVG Trigger: GCCCACTCTGGGCTGGTGGCAGGAGTGCCATCTGGG...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 54% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGAGTGTGGCCCAGAGCATaGGTCAGCAGCCTGTGCACC | + |
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Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGVWPRA*VSSLCT Trigger: GGTGCACAGGCTGCTGACCCATGCTCTGGGCCACAC...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGACCTGGCAGTGCAGTGTaGCCCAGAGCATGGGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGPGSAV*PRAWVS Trigger: GCTGACCCATGCTCTGGGCCACACTGCACTGCCAGG...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGACCAGTGCCTGTGCAGTaGGCAGGGCTACTCCTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGPVPVQ*AGLLLP Trigger: GGGAAGGAGTAGCCCTGCCCACTGCACAGGCACTGG...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGCTGCAGTCTCTGCTCTaGGAGCTCCAGCCACTGGAA | + |
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Preference number: 4 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMLQSLL*ELQPLE Trigger: TTCCAGTGGCTGGAGCTCTCAGAGCAGAGACTGCAG...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCCCTTCCACCAGCAGTaGCACTGCCCCCTCTACACG | + |
|
Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPPFHQQ*HCPLYT Trigger: CGTGTAGAGGGGGCAGTGTCACTGCTGGTGGAAGGG...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 53% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGAGCACAGTGGAGTTGTaGAGGAAGCGCACAGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMSTVEL*RKRTVP Trigger: GGGCACTGTGCGCTTCCTGCACAACTCCACTGTGCT...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGAAGGCCACTGCAGCCTaGTCAGTGGGGAATCCCATG | + |
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Preference number: 4 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMKATAA*SVGNPM Trigger: CATGGGATTCCCCACTGAGCAGGCTGCAGTGGCCTT...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGAAGCTGCCAAGGCCACTaGAGCCTGCTCAGTGGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGSCQGH*SLLSGE Trigger: TTCCCCACTGAGCAGGCTGCAGTGGCCTTGGCAGCT...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCGTGTGGCCCAGAGCATaGGTCAGCAGCCTGTGCACC | + |
|
Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPVWPRA*VSSLCT Trigger: GGTGCACAGGCTGCTGACCCATGCTCTGGGCCACAC...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCCTGGCAGTGCAGTGTaGCCCAGAGCATGGGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPPGSAV*PRAWVS Trigger: GCTGACCCATGCTCTGGGCCACACTGCACTGCCAGG...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGCCAGGGCAAGCACAGTaGAGTTGTGCAGGAAGCGCA | + |
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Preference number: 4 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMPGQAQ*SCAGSA Trigger: TGCGCTTCCTGCACAACTCCACTGTGCTTGCCCTGG...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGAGAGCTGCAGGAAGGGTaGCTCAGAGCTGAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGELQEG*LRAEQQ Trigger: CTGCTGCTCAGCTCTGAGCCACCCTTCCTGCAGCTC...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCCAGTGCCTGTGCAGTaGGCAGGGCTACTCCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPPVPVQ*AGLLLP Trigger: GGGAAGGAGTAGCCCTGCCCACTGCACAGGCACTGG...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | AAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTGCTCTGGAGCCAATCTaGGGCTGGGGCCAGCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: KSAFILTKYQGNMLGPSPALEPI*GWGQPP Trigger: TGGGGGCTGGCCCCAGCCTCAGATTGGCTCCAGAGC...AGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTAGCTCTGGAGCCAATCTaGGGCTGGGGCCAGCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLALEPI*GWGQPP Trigger: TGGGGGCTGGCCCCAGCCTCAGATTGGCTCCAGAGC...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCGTGAGGCCAGGAGTCTaGGGAAGCCAGGTAAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPVRPGV*GSQVRR Trigger: CCTCCTTACCTGGCTTCCTCAGACTCCTGGCCTCAC...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGCTGGGAACCCTGAACTaGCACATCAAGAAGGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMLGTLN*HIKKGG Trigger: GCCTCCCTTCTTGATGTGTCAGTTCAGGGTTCCCAG...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGAAGCACAGTGGAGTTGTaGAGGAAGCGCACAGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGSTVEL*RKRTVP Trigger: GGGCACTGTGCGCTTCCTGCACAACTCCACTGTGCT...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCAGCTGCCAAGGCCACTaGAGCCTGCTCAGTGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPSCQGH*SLLSGE Trigger: TTCCCCACTGAGCAGGCTGCAGTGGCCTTGGCAGCT...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTATCCAGGCCCCAGGCGTaGTGGGAGCTGAGCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLSRPQA*WELSRA Trigger: GGCTCTGCTCAGCTCCCACCACGCCTGGGGCCTGGA...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATACAGGCTAGGCCAGTaGGAAGGCCACAAAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGYRLGQ*EGHKGA Trigger: AGCTCCTTTGTGGCCTTCTCACTGGCCTAGCCTGTA...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036320.12 |
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| CDS-3UTR GCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCAGCAGCCTGTGCACCTaGCAGGGTTCCATTAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPSSLCT*QGSISS Trigger: GCTGCTAATGGAACCCTGGCAGGTGCACAGGCTGCT...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCAAGGCCACTGCAGCCTaGTCAGTGGGGAATCCCATG | + |
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Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPKATAA*SVGNPM Trigger: CATGGGATTCCCCACTGAGCAGGCTGCAGTGGCCTT...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTGCTCAGGAGCAGGCCTaGCAGTGCAGTGTGGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: KSAFILTKYQGNMLGPSPAQEQA*QCSVAQ Trigger: CTGGGCCACACTGCACTGCCAGGCCTGCTCCTGAGC...AGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACGCACAGTGCCCAGATaGCACTCCTGCCACCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLRTVPR*HSCHQP Trigger: GGGCTGGTGGCAGGAGTGCCATCTGGGCACTGTGCG...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCGAGCTGCAGGAAGGGTaGCTCAGAGCTGAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: SAFILTKYQGNMLGPSPTELQEG*LRAEQQ Trigger: CTGCTGCTCAGCTCTGAGCCACCCTTCCTGCAGCTC...GGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTAAGGCCCCAGGCGTGGTaGGAGCTGAGCAGAGCCATC | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLRPQAW*ELSRAI Trigger: GATGGCTCTGCTCAGCTCCCACCACGCCTGGGGCCT...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGAGACACAGAGGGCTTTaGCAACCACAGAGAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMRHRGL*QPQRAL Trigger: CAGAGCTCTCTGTGGTTGCCAAAGCCCTCTGTGTCT...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | TCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCTGCAGTCTCTGCTCTaGGAGCTCCAGCCACTGGAA | + |
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Preference number: 4 (lower is better) Translates to: SAFILTKYQGNMLGPSPTLQSLL*ELQPLE Trigger: TTCCAGTGGCTGGAGCTCTCAGAGCAGAGACTGCAG...GGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCTTCCACCAGCAGTaGCACTGCCCCCTCTACACG | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLPFHQQ*HCPLYT Trigger: CGTGTAGAGGGGGCAGTGTCACTGCTGGTGGAAGGG...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | AAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTCCCTTCCACCAGCAGTaGCACTGCCCCCTCTACACG | + |
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Preference number: 4 (lower is better) Translates to: KSAFILTKYQGNMLGPSPPFHQQ*HCPLYT Trigger: CGTGTAGAGGGGGCAGTGTCACTGCTGGTGGAAGGG...AGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | CAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCATAGGCTAGGCCAGTaGGAAGGCCACAAAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: QLLFLQSTRETCWGLVLPHRLGQ*EGHKGA Trigger: AGCTCCTTTGTGGCCTTCTCACTGGCCTAGCCTATG...GGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | TCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCAAGGCCACTGCAGCCTaGTCAGTGGGGAATCCCATG | + |
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Preference number: 4 (lower is better) Translates to: SAFILTKYQGNMLGPSPTKATAA*SVGNPM Trigger: CATGGGATTCCCCACTGAGCAGGCTGCAGTGGCCTT...GGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTGTGTGGCCCAGAGCATaGGTCAGCAGCCTGTGCACC | + |
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Preference number: 4 (lower is better) Translates to: KSAFILTKYQGNMLGPSPVWPRA*VSSLCT Trigger: GGTGCACAGGCTGCTGACCCATGCTCTGGGCCACAC...AGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGCAAGCACAGTaGAGTTGTGCAGGAAGCGCA | + |
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Preference number: 4 (lower is better) Translates to: SAFILTKYQGNMLGPSPTPGQAQ*SCAGSA Trigger: TGCGCTTCCTGCACAACTCCACTGTGCTTGCCCTGG...GGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATCAAGAAGGGAGGCCTaGATCCCTTCCTGTAGCATC | + |
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Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGSRREA*IPSCSI Trigger: GATGCTACAGGAAGGGATCCAGGCCTCCCTTCTTGA...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGAAGACACAGAGGGCTTTaGCAACCACAGAGAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: LFLQSTRETCWGLVLPQGRHRGL*QPQRAL Trigger: CAGAGCTCTCTGTGGTTGCCAAAGCCCTCTGTGTCT...TCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTAGTGAGGCCAGGAGTCTaGGGAAGCCAGGTAAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLVRPGV*GSQVRR Trigger: CCTCCTTACCTGGCTTCCTCAGACTCCTGGCCTCAC...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTAGAGCTGCAGGAAGGGTaGCTCAGAGCTGAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLELQEG*LRAEQQ Trigger: CTGCTGCTCAGCTCTGAGCCACCCTTCCTGCAGCTC...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | TCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCTGCAGCCTGCTCAGTaGGGAATCCCATGTGCTGTA | + |
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Preference number: 4 (lower is better) Translates to: SAFILTKYQGNMLGPSPTLQPAQ*GIPCAV Trigger: TACAGCACATGGGATTCCCCACTGAGCAGGCTGCAG...GGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTAAGCAGCCTGTGCACCTaGCAGGGTTCCATTAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLSSLCT*QGSISS Trigger: GCTGCTAATGGAACCCTGGCAGGTGCACAGGCTGCT...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | AAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTAGCAGCCTGTGCACCTaGCAGGGTTCCATTAGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KSAFILTKYQGNMLGPSPSSLCT*QGSISS Trigger: GCTGCTAATGGAACCCTGGCAGGTGCACAGGCTGCT...AGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCAGGGCAAGCACAGTaGAGTTGTGCAGGAAGCGCA | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLPGQAQ*SCAGSA Trigger: TGCGCTTCCTGCACAACTCCACTGTGCTTGCCCTGG...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | AAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTCTGGGAACCCTGAACTaGCACATCAAGAAGGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: KSAFILTKYQGNMLGPSPLGTLN*HIKKGG Trigger: GCCTCCCTTCTTGATGTGTCAGTTCAGGGTTCCCAG...AGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR TCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACATAGGCTAGGCCAGTaGGAAGGCCACAAAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLHRLGQ*EGHKGA Trigger: AGCTCCTTTGTGGCCTTCTCACTGGCCTAGCCTATG...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACTGCAGCCTGCTCAGTaGGGAATCCCATGTGCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLLQPAQ*GIPCAV Trigger: TACAGCACATGGGATTCCCCACTGAGCAGGCTGCAG...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTATCAAGAAGGGAGGCCTaGATCCCTTCCTGTAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLSRREA*IPSCSI Trigger: GATGCTACAGGAAGGGATCCAGGCCTCCCTTCTTGA...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTAAGACACAGAGGGCTTTaGCAACCACAGAGAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLRHRGL*QPQRAL Trigger: CAGAGCTCTCTGTGGTTGCCAAAGCCCTCTGTGTCT...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | AAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTATGTGCTGTAGCTGCTaGAGCCTTAGAGAAGACACA | + |
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Preference number: 4 (lower is better) Translates to: KSAFILTKYQGNMLGPSPMCCSC*SLREDT Trigger: TGTGTCTTCTCTAAGGCTGCAGCAGCTACAGCACAT...AGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR GCA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTAATGTGCTGTAGCTGCTaGAGCCTTAGAGAAGACACA | + |
|
Preference number: 4 (lower is better) Translates to: NQLLFLQSTRETCWGLVLMCCSC*SLREDT Trigger: TGTGTCTTCTCTAAGGCTGCAGCAGCTACAGCACAT...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS TCA 90 bp | GCGTGGTGGGAGCTGAGCAGAGCCATCACTGTGAGGCCAGGAGTCTaGGGAAGCCAGGTAAGGAGGTCTAGGGGTGGCAGGCCCAGACTG | + |
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Preference number: 5 (lower is better) Translates to: AWWELSRAITVRPGV*GSQVRRSRGGRPRL Trigger: CAGTCTGGGCCTGCCACCCCTAGACCTCCTTACCTGGCTTCCTCAGACTCCTGGCCTCACAGTGATGGCTCTGCTCAGCTCCCACCACGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036320.12 |
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| CDS TCA 90 bp | GCGTGGTGGGAGCTGAGCAGAGCCATCACTGTGAGGCCAGGAGTCTaGGGAAGCCAGGTAAGGAGGTCTAGGGGTGGCAGGCCTCACTCC | + |
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Preference number: 5 (lower is better) Translates to: AWWELSRAITVRPGV*GSQVRRSRGGRPHS Trigger: GGAGTGAGGCCTGCCACCCCTAGACCTCCTTACCTGGCTTCCTCAGACTCCTGGCCTCACAGTGATGGCTCTGCTCAGCTCCCACCACGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS GCA 90 bp | ACTGCCCCCTCTACACGCCCTGTAGCTGCCAAGGCCACTGCAGCCTaGTCAGTGGGGAATCCCATGTGCTGTAGCTGCTGCAGCCTTAGA | + |
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Preference number: 5 (lower is better) Translates to: TAPSTRPVAAKATAA*SVGNPMCCSCCSLR Trigger: TCTAAGGCTGCAGCAGCTACAGCACATGGGATTCCCCACTGAGCAGGCTGCAGTGGCCTTGGCAGCTACAGGGCGTGTAGAGGGGGCAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS GCA 90 bp | CCGGGGTGGGAAAGAGCCTCAGCGGCCAGCATCGGGCCAGAGACTTaGAAAGGACACCTTCCTGTAACACCTGCAGTCTCTGCTCTGAGA | + |
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Preference number: 5 (lower is better) Translates to: PGWERASAASIGPET*KGHLPVTPAVSALR Trigger: TCTCAGAGCAGAGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCAAGTCTCTGGCCCGATGCTGGCCGCTGAGGCTCTTTCCCACCCCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS GCA 90 bp | GCCAGAGACTTGCAAAGGACACCTTCCTGTAACACCTGCAGTCTCTaGTCTGAGAGCTCCAGCCACTGGAAGGCCCCAGCAGCATCTACA | + |
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Preference number: 5 (lower is better) Translates to: ARDLQRTPSCNTCSL*SESSSHWKAPAAST Trigger: TGTAGATGCTGCTGGGGCCTTCCAGTGGCTGGAGCTCTCAGAGCAGAGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCAAGTCTCTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036320.12 |
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| CDS TCA 90 bp | GAAGACACAGAGGGCTTTGGCAACCACAGAGAGCTCTGGGAACCCTaGACTGACACATCAAGAAGGGAGGCCTGGATCCCTTCCTGTAGC | + |
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Preference number: 5 (lower is better) Translates to: EDTEGFGNHRELWEP*TDTSRREAWIPSCS Trigger: GCTACAGGAAGGGATCCAGGCCTCCCTTCTTGATGTGTCAGTTCAGGGTTCCCAGAGCTCTCTGTGGTTGCCAAAGCCCTCTGTGTCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CAA 90 bp | ATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCCCAGGGATGAAGACACAGAGGGCTTaGGCAACCACAGAGAGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: ILTKYQGNMLGPSPTPGMKTQRA*ATTESS Trigger: AGAGCTCTCTGTGGTTGCCAAAGCCCTCTGTGTCTT...CATCCCTGGGGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CAA 90 bp | TCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTACCAAGACACAGAGGGCTTaGGCAACCACAGAGAGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: SAFILTKYQGNMLGPSPTKTQRA*ATTESS Trigger: AGAGCTCTCTGTGGTTGCCAAAGCCCTCTGTGTCTT...GGTAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CAA 90 bp | AAATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTCATCGGGCCAGAGACTaGCAAAGGACACCTTCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: KSAFILTKYQGNMLGPSPHRARD*QRTPSC Trigger: ACAGGAAGGTGTCCTTTGCAAGTCTCTGGCCCGATG...AGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS-3UTR CAA 90 bp | AATCAGCTTTTATTCTTACAAAGTACCAGGGAAACATGTTGGGGCCTAGTCCTAAAGACACAGAGGGCTTaGGCAACCACAGAGAGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: NQLLFLQSTRETCWGLVLKTQRA*ATTESS Trigger: AGAGCTCTCTGTGGTTGCCAAAGCCCTCTGTGTCTT...TAGGACTAGGCCCCAACATGTTTCCCTGGTACTTTGTAAGAATAAAAGCTGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS CCA 72 bp | CGAGTTCTTCCATGTCAGCTGTCCAGGCCCCAGGCGTaGTGGGAGCTGAGCAGAGCCATCACTGTGAGGCCA | + |
|
Preference number: 6 (lower is better) Translates to: RVLPCQLSRPQA*WELSRAITVRP Trigger: TGGCCTCACAGTGATGGCTCTGCTCAGCTCCCACCACGCCTGGGGCCTGGACAGCTGACATGGAAGAACTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS CAA 90 bp | CCCGGGGTGGGAAAGAGCCTCAGCGGCCAGCATCGGGCCAGAGACTaGCAAAGGACACCTTCCTGTAACACCTGCAGTCTCTGCTCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: PGVGKSLSGQHRARD*QRTPSCNTCSLCSE Trigger: CTCAGAGCAGAGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCAAGTCTCTGGCCCGATGCTGGCCGCTGAGGCTCTTTCCCACCCCGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS TCA 72 bp | CCTGCCAGGGTTCCATTAGCAGCTCTGGAGCCAATCTaGGGCTGGGGCCAGCCCCCAATAACCACAGACAGC | + |
|
Preference number: 6 (lower is better) Translates to: PARVPLAALEPI*GWGQPPITTDS Trigger: GCTGTCTGTGGTTATTGGGGGCTGGCCCCAGCCTCAGATTGGCTCCAGAGCTGCTAATGGAACCCTGGCAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 ENSMUST00000134267.8 ENSMUST00000148761.8 |
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| CDS GCA 72 bp | TCTACACGCCCTGTAGCTGCCAAGGCCACTGCAGCCTaGTCAGTGGGGAATCCCATGTGCTGTAGCTGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: STRPVAAKATAA*SVGNPMCCSCC Trigger: GCAGCAGCTACAGCACATGGGATTCCCCACTGAGCAGGCTGCAGTGGCCTTGGCAGCTACAGGGCGTGTAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS TCA 72 bp | GAGGGCTTTGGCAACCACAGAGAGCTCTGGGAACCCTaGACTGACACATCAAGAAGGGAGGCCTGGATCCCT | + |
|
Preference number: 6 (lower is better) Translates to: EGFGNHRELWEP*TDTSRREAWIP Trigger: AGGGATCCAGGCCTCCCTTCTTGATGTGTCAGTTCAGGGTTCCCAGAGCTCTCTGTGGTTGCCAAAGCCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS TCA 72 bp | CTTTGGCAACCACAGAGAGCTCTGGGAACCCTGAACTaGCACATCAAGAAGGGAGGCCTGGATCCCTTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: LWQPQRALGTLN*HIKKGGLDPFL Trigger: CAGGAAGGGATCCAGGCCTCCCTTCTTGATGTGTCAGTTCAGGGTTCCCAGAGCTCTCTGTGGTTGCCAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS GCA 72 bp | GCCAGAGACTTGCAAAGGACACCTTCCTGTAACACCTaGAGTCTCTGCTCTGAGAGCTCCAGCCACTGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: ARDLQRTPSCNT*SLCSESSSHWK Trigger: CTTCCAGTGGCTGGAGCTCTCAGAGCAGAGACTGCAGGTGTTACAGGAAGGTGTCCTTTGCAAGTCTCTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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| CDS CAA 72 bp | GTAGCTGCTGCAGCCTTAGAGAAGACACAGAGGGCTTaGGCAACCACAGAGAGCTCTGGGAACCCTGAACTG | + |
|
Preference number: 6 (lower is better) Translates to: VAAAALEKTQRA*ATTESSGNPEL Trigger: CAGTTCAGGGTTCCCAGAGCTCTCTGTGGTTGCCAAAGCCCTCTGTGTCTTCTCTAAGGCTGCAGCAGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036320.12 ENSMUST00000101610.10 ENSMUST00000109878.9 |
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