Pregenerated sensors for RGS5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026678Ensembl transcript IDs: ENSMUST00000027997.9, ENSMUST00000152809.3
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACTCAACTCTGGAGAGTTTACACACCAAGACTTACAGCCCAAACCTaGCTAGAGTTCGCTAGCCCTGGGGTTTGGATGCTTGGATGCTCC | + |
|
Preference number: 1 (lower is better) Translates to: TQLWRVYTPRLTAQT*LEFASPGVWMLGCS Trigger: GGAGCATCCAAGCATCCAAACCCCAGGGCTAGCGAACTCTAGGCAGGTTTGGGCTGTAAGTCTTGGTGTGTAAACTCTCCAGAGTTGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CCA 90 bp | AGACTTACAGCCCAAACCTGCCTAGAGTTCGCTAGCCCTGGGGTTTaGATGCTTGGATGCTCCAAATTGAACCCTCCACTCTCTACTTTC | + |
|
Preference number: 1 (lower is better) Translates to: RLTAQTCLEFASPGV*MLGCSKLNPPLSTF Trigger: GAAAGTAGAGAGTGGAGGGTTCAATTTGGAGCATCCAAGCATCCAAACCCCAGGGCTAGCGAACTCTAGGCAGGTTTGGGCTGTAAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR GCA 90 bp | AAGCTGCTATGGAGAACTGTGCAGGTGCCTGGGAGGATGCTGTGTTaGTACAAAGGATGTAACTCAACTCACAGGGCAACTTTTGGAAGC | + |
|
Preference number: 1 (lower is better) Translates to: KLLWRTVQVPGRMLC*YKGCNSTHRATFGS Trigger: GCTTCCAAAAGTTGCCCTGTGAGTTGAGTTACATCCTTTGTAGCAACACAGCATCCTCCCAGGCACCTGCACAGTTCTCCATAGCAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR GCA 90 bp | TTGGAGCAAAGCTGCTATGGAGAACTGTGCAGGTGCCTGGGAGGATaGTGTGTTGCTACAAAGGATGTAACTCAACTCACAGGGCAACTT | + |
|
Preference number: 1 (lower is better) Translates to: LEQSCYGELCRCLGG*CVATKDVTQLTGQL Trigger: AAGTTGCCCTGTGAGTTGAGTTACATCCTTTGTAGCAACACAGCATCCTCCCAGGCACCTGCACAGTTCTCCATAGCAGCTTTGCTCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CCA 90 bp | GCCTGTGGTTTGCCTATGTTTGTGTATCTTGGAGCAAAGCTGCTATaGAGAACTGTGCAGGTGCCTGGGAGGATGCTGTGTTGCTACAAA | + |
|
Preference number: 1 (lower is better) Translates to: ACGLPMFVYLGAKLL*RTVQVPGRMLCCYK Trigger: TTTGTAGCAACACAGCATCCTCCCAGGCACCTGCACAGTTCTCCATAGCAGCTTTGCTCCAAGATACACAAACATAGGCAAACCACAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 90 bp | ACATGGGACACAGGCTCTTACCCTGATAGTCTGTATCTGCTGATTTaGTTTAAAGATTCATCTGACCCTCAACCCAGAACTATATCAGCC | + |
|
Preference number: 1 (lower is better) Translates to: TWDTGSYPDSLYLLI*FKDSSDPQPRTISA Trigger: GGCTGATATAGTTCTGGGTTGAGGGTCAGATGAATCTTTAAATCAAATCAGCAGATACAGACTATCAGGGTAAGAGCCTGTGTCCCATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CCA 90 bp | ATAACCCAGAATGACAGCAAGATGCAGTTTGATTCTCCTTCATTCTaGGCTGTTCCTCTGTGTTTTCTAGCCAGTGTGCTACTTTTCCTA | + |
|
Preference number: 1 (lower is better) Translates to: ITQNDSKMQFDSPSF*AVPLCFLASVLLFL Trigger: TAGGAAAAGTAGCACACTGGCTAGAAAACACAGAGGAACAGCCCAGAATGAAGGAGAATCAAACTGCATCTTGCTGTCATTCTGGGTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 90 bp | GACACACATGGGACACAGGCTCTTACCCTGATAGTCTGTATCTGCTaGTTTGATTTAAAGATTCATCTGACCCTCAACCCAGAACTATAT | + |
|
Preference number: 1 (lower is better) Translates to: DTHGTQALTLIVCIC*FDLKIHLTLNPELY Trigger: ATATAGTTCTGGGTTGAGGGTCAGATGAATCTTTAAATCAAATCAGCAGATACAGACTATCAGGGTAAGAGCCTGTGTCCCATGTGTGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 90 bp | CGGTTATCATTAAACAGTAAATCGAGGATAAAACTCCAAAGCTACTaGCTGTGGGTTGTCTTCATCATTGTCTGCAATAAGCTTCCATTT | + |
|
Preference number: 1 (lower is better) Translates to: RLSLNSKSRIKLQSY*LWVVFIIVCNKLPF Trigger: AAATGGAAGCTTATTGCAGACAATGATGAAGACAACCCACAGTCAGTAGCTTTGGAGTTTTATCCTCGATTTACTGTTTAATGATAACCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CAA 90 bp | GAAGCATGCCTGCCTGCATCCTTTTGTGGCCTCACAGCACTGCCCTaGAGGCACCCTTCCTACCCTTCTCACCCTGCACTGACAAGACTA | + |
|
Preference number: 2 (lower is better) Translates to: EACLPASFCGLTALP*RHPSYPSHPALTRL Trigger: TAGTCTTGTCAGTGCAGGGTGAGAAGGGTAGGAAGGGTGCCTCAAGGGCAGTGCTGTGAGGCCACAAAAGGATGCAGGCAGGCATGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CAA 90 bp | ATAATGCAGCCCTTAGACTGCAGAAGCATGCCTGCCTGCATCCTTTaGTGGCCTCACAGCACTGCCCTTGAGGCACCCTTCCTACCCTTC | + |
|
Preference number: 2 (lower is better) Translates to: IMQPLDCRSMPACIL*WPHSTALEAPFLPF Trigger: GAAGGGTAGGAAGGGTGCCTCAAGGGCAGTGCTGTGAGGCCACAAAAGGATGCAGGCAGGCATGCTTCTGCAGTCTAAGGGCTGCATTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR GCA 90 bp | GTCTGGCAAGCATTACCCAGATTCCTCCCCTCCTGTGACATATTTCTCAGCATTTGCTATGGAGAACTGTaGAGGTGCCTGGGAGGATGC | + |
|
Preference number: 2 (lower is better) Translates to: VWQALPRFLPSCDIFLSICYGEL*RCLGGC Trigger: GCATCCTCCCAGGCACCTGCACAGTTCTCCATAGCA...AATGCTGAGAAATATGTCACAGGAGGGGAGGAATCTGGGTAATGCTTGCCAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR GCA 90 bp | GTCTGGCAAGCATTACCCAGATTCCTCCCCTCCTGTGACATATTTCTCAGCATTATGCAGCCCTTAGACTaGAGAAGCATGCCTGCCTGC | + |
|
Preference number: 2 (lower is better) Translates to: VWQALPRFLPSCDIFLSIMQPLD*RSMPAC Trigger: GCAGGCAGGCATGCTTCTGCAGTCTAAGGGCTGCAT...AATGCTGAGAAATATGTCACAGGAGGGGAGGAATCTGGGTAATGCTTGCCAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR TCA 90 bp | AAGAGGGAAACACAAGCAGCCCTGGGCTCACACATTAAGTTAGCTTCATACTTTTCACAGCACTGCCCTTaGGGCACCCTTCCTACCCTT | + |
|
Preference number: 2 (lower is better) Translates to: KRETQAALGSHIKLASYFSQHCP*GTLPTL Trigger: AAGGGTAGGAAGGGTGCCTCAAGGGCAGTGCTGTGA...AAAGTATGAAGCTAACTTAATGTGTGAGCCCAGGGCTGCTTGTGTTTCCCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR GCA 90 bp | AAACCAGAACTCTTGTTCCCTCACATCGTGATGACTCCGTGTCCTGGAATGTCTAGAAGCATGCCTGCCTaGATCCTTTTGTGGCCTCAC | + |
|
Preference number: 2 (lower is better) Translates to: KPELLFPHIVMTPCPGMSRSMPA*ILLWPH Trigger: GTGAGGCCACAAAAGGATGCAGGCAGGCATGCTTCT...AGACATTCCAGGACACGGAGTCATCACGATGTGAGGGAACAAGAGTTCTGGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CCA 90 bp | AAACCAGAACTCTTGTTCCCTCACATCGTGATGACTCCGTGTCCTGGAATGTCTGGAGCAAAGCTGCTATaGAGAACTGTGCAGGTGCCT | + |
|
Preference number: 2 (lower is better) Translates to: KPELLFPHIVMTPCPGMSGAKLL*RTVQVP Trigger: AGGCACCTGCACAGTTCTCCATAGCAGCTTTGCTCC...AGACATTCCAGGACACGGAGTCATCACGATGTGAGGGAACAAGAGTTCTGGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CAA 90 bp | AAAGAGTTAGCAACACAGCCTGTGGTTTGCCTATGTTTGTGTATCTaGGAGCAAAGCTGCTATGGAGAACTGTGCAGGTGCCTGGGAGGA | + |
|
Preference number: 2 (lower is better) Translates to: KELATQPVVCLCLCI*EQSCYGELCRCLGG Trigger: TCCTCCCAGGCACCTGCACAGTTCTCCATAGCAGCTTTGCTCCAAGATACACAAACATAGGCAAACCACAGGCTGTGTTGCTAACTCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CCA 90 bp | CAAGAAGCAAATACTCCTGCCCTTGACCACAATTTAGACCCAACCCTTTCCTACCTAGCTGTGCTCTCCTaGAAGAGGGAAACACAAGCA | + |
|
Preference number: 2 (lower is better) Translates to: QEANTPALDHNLDPTLSYLAVLS*KRETQA Trigger: TGCTTGTGTTTCCCTCTTCCAGGAGAGCACAGCTAG...GTAGGAAAGGGTTGGGTCTAAATTGTGGTCAAGGGCAGGAGTATTTGCTTCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR GCA 90 bp | AAACCAGAACTCTTGTTCCCTCACATCGTGATGACTCCGTGTCCTGGAATGTCTGGGAGGATGCTGTGTTaGTACAAAGGATGTAACTCA | + |
|
Preference number: 2 (lower is better) Translates to: KPELLFPHIVMTPCPGMSGRMLC*YKGCNS Trigger: TGAGTTACATCCTTTGTAGCAACACAGCATCCTCCC...AGACATTCCAGGACACGGAGTCATCACGATGTGAGGGAACAAGAGTTCTGGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR GCA 90 bp | AAGAGGGAAACACAAGCAGCCCTGGGCTCACACATTAAGTTAGCTTCATACTTTCTACCCTTCTCACCCTaGACTGACAAGACTAACCAA | + |
|
Preference number: 2 (lower is better) Translates to: KRETQAALGSHIKLASYFLPFSP*TDKTNQ Trigger: TTGGTTAGTCTTGTCAGTGCAGGGTGAGAAGGGTAG...AAAGTATGAAGCTAACTTAATGTGTGAGCCCAGGGCTGCTTGTGTTTCCCTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CCA 90 bp | ACAGCAAGATGCAGTTTGATTCTCCTTCATTCTGGGCTGTTCCTCTGTGTTTTCAGCCGGTTCACTCCTTaGGTATTTTCAGACATTCGG | + |
|
Preference number: 2 (lower is better) Translates to: TARCSLILLHSGLFLCVFSRFTP*VFSDIR Trigger: CCGAATGTCTGAAAATACCCAAGGAGTGAACCGGCT...GAAAACACAGAGGAACAGCCCAGAATGAAGGAGAATCAAACTGCATCTTGCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR TCA 90 bp | AAACCAGAACTCTTGTTCCCTCACATCGTGATGACTCCGTGTCCTGGAATGTCTCTACTTTTCCTAGGCTaGGCTCTTATTTCTTTGCTA | + |
|
Preference number: 2 (lower is better) Translates to: KPELLFPHIVMTPCPGMSLLFLG*ALISLL Trigger: TAGCAAAGAAATAAGAGCTCAGCCTAGGAAAAGTAG...AGACATTCCAGGACACGGAGTCATCACGATGTGAGGGAACAAGAGTTCTGGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CAA 90 bp | AACCAAACTAACATGAGCGAAAGAGTTAGCAACACAGCCTGTGGTTaGCCTATGTTTGTGTATCTTGGAGCAAAGCTGCTATGGAGAACT | + |
|
Preference number: 2 (lower is better) Translates to: NQTNMSERVSNTACG*PMFVYLGAKLLWRT Trigger: AGTTCTCCATAGCAGCTTTGCTCCAAGATACACAAACATAGGCAAACCACAGGCTGTGTTGCTAACTCTTTCGCTCATGTTAGTTTGGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR TCA 90 bp | CCCACAATTCTAATGGAAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCCCAGTCAAATCCCCATaGAAGGGGACACTTGCATCT | + |
|
Preference number: 2 (lower is better) Translates to: PTILMEKKLSTVAFFSNFPVKSP*KGTLAS Trigger: AGATGCAAGTGTCCCCTTTCATGGGGATTTGACTGG...GAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTTCCATTAGAATTGTGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR TCA 90 bp | ACAGCAAGATGCAGTTTGATTCTCCTTCATTCTGGGCTGTTCCTCTGTGTTTTCAGGGCAGGATTGAAATaGATCCTGTTTAGAAGCACA | + |
|
Preference number: 2 (lower is better) Translates to: TARCSLILLHSGLFLCVFRAGLK*ILFRST Trigger: TGTGCTTCTAAACAGGATTCATTTCAATCCTGCCCT...GAAAACACAGAGGAACAGCCCAGAATGAAGGAGAATCAAACTGCATCTTGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR TCA 90 bp | ATAGGCCTCCTTCAGGAACAAGAAGCAAATACTCCTGCCCTTGACCACAATTTACATGAAGGGCAGGATTaGAATGAATCCTGTTTAGAA | + |
|
Preference number: 2 (lower is better) Translates to: IGLLQEQEANTPALDHNLHEGQD*NESCLE Trigger: TTCTAAACAGGATTCATTTCAATCCTGCCCTTCATG...TAAATTGTGGTCAAGGGCAGGAGTATTTGCTTCTTGTTCCTGAAGGAGGCCTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR GCA 90 bp | AAACCAGAACTCTTGTTCCCTCACATCGTGATGACTCCGTGTCCTGGAATGTCTGTCTTCATCATTGTCTaGAATAAGCTTCCATTTAGA | + |
|
Preference number: 2 (lower is better) Translates to: KPELLFPHIVMTPCPGMSVFIIV*NKLPFR Trigger: TCTAAATGGAAGCTTATTGCAGACAATGATGAAGAC...AGACATTCCAGGACACGGAGTCATCACGATGTGAGGGAACAAGAGTTCTGGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CCA 90 bp | AAGAGGGAAACACAAGCAGCCCTGGGCTCACACATTAAGTTAGCTTCATACTTTTACACATTCTTTTCCTaGAAAGGTCATCCCACTTTT | + |
|
Preference number: 2 (lower is better) Translates to: KRETQAALGSHIKLASYFYTFFS*KGHPTF Trigger: AAAAGTGGGATGACCTTTCCAGGAAAAGAATGTGTA...AAAGTATGAAGCTAACTTAATGTGTGAGCCCAGGGCTGCTTGTGTTTCCCTCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CCA 90 bp | TGCCCAGAAGAAAAAGTCAAAATCTGGACTGTGAATGAGCTTATAACATATCCCACAGTTCAATGTTCCTaGAGACCAGTCACAGGGTTA | + |
|
Preference number: 2 (lower is better) Translates to: CPEEKVKIWTVNELITYPTVQCS*RPVTGL Trigger: TAACCCTGTGACTGGTCTCCAGGAACATTGAACTGT...GGGATATGTTATAAGCTCATTCACAGTCCAGATTTTGACTTTTTCTTCTGGGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| 3UTR-3UTR GCA 90 bp | AAGAGGGAAACACAAGCAGCCCTGGGCTCACACATTAAGTTAGCTTCATACTTTCTATCACCTATTCTTTaGACAGACAGCTTTATGTTA | + |
|
Preference number: 2 (lower is better) Translates to: KRETQAALGSHIKLASYFLSPIL*TDSFML Trigger: TAACATAAAGCTGTCTGTGCAAAGAATAGGTGATAG...AAAGTATGAAGCTAACTTAATGTGTGAGCCCAGGGCTGCTTGTGTTTCCCTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR GCA 90 bp | AAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCCTATGGGATCTTAAGAACACAGCCTGTGGTTTaGCTATGTTTGTGTATCTTG | + |
|
Preference number: 2 (lower is better) Translates to: KRSSPQLPFSLISYGILRTQPVV*LCLCIL Trigger: CAAGATACACAAACATAGGCAAACCACAGGCTGTGT...TCTTAAGATCCCATAGGAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CCA 90 bp | TGCCCAGAAGAAAAAGTCAAAATCTGGACTGTGAATGAGCTTATAACATATCCCGTCAAAGAGTTTACATaGAGATCTCACAGGAACAGA | + |
|
Preference number: 2 (lower is better) Translates to: CPEEKVKIWTVNELITYPVKEFT*RSHRNR Trigger: TCTGTTCCTGTGAGATCTCCATGTAAACTCTTTGAC...GGGATATGTTATAAGCTCATTCACAGTCCAGATTTTGACTTTTTCTTCTGGGCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| 3UTR-3UTR GCA 90 bp | CCCACAATTCTAATGGAAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCAGAATGACAGCAAGATaGAGTTTGATTCTCCTTCAT | + |
|
Preference number: 2 (lower is better) Translates to: PTILMEKKLSTVAFFSNFRMTAR*SLILLH Trigger: ATGAAGGAGAATCAAACTGCATCTTGCTGTCATTCT...GAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTTCCATTAGAATTGTGGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR GCA 90 bp | AAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCCTATGGGATCTTAAGATTAATGGATGCCTACTaGTCTTCAGGAAATAATCGA | + |
|
Preference number: 2 (lower is better) Translates to: KRSSPQLPFSLISYGILRLMDAY*SSGNNR Trigger: TCGATTATTTCCTGAAGAGCAGTAGGCATCCATTAA...TCTTAAGATCCCATAGGAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CAA 90 bp | ATAAGTAAAGACAGTAAAATATTTCCATGTATTTGGTTCTGCCTTTaGAAAGGTGTCCTCTATATAGGAGAGAGTGTGTATGTGAGTGTG | + |
|
Preference number: 2 (lower is better) Translates to: ISKDSKIFPCIWFCL*KGVLYIGESVYVSV Trigger: CACACTCACATACACACTCTCTCCTATATAGAGGACACCTTTCAAAAGGCAGAACCAAATACATGGAAATATTTTACTGTCTTTACTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CCA 72 bp | GCCCAAACCTGCCTAGAGTTCGCTAGCCCTGGGGTTTaGATGCTTGGATGCTCCAAATTGAACCCTCCACTC | + |
|
Preference number: 3 (lower is better) Translates to: AQTCLEFASPGV*MLGCSKLNPPL Trigger: GAGTGGAGGGTTCAATTTGGAGCATCCAAGCATCCAAACCCCAGGGCTAGCGAACTCTAGGCAGGTTTGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CCA 72 bp | CCCTCACATCGTGATGACTCCGTGTCCTGGAATGTCTaGCAAGCATTACCCAGATTCCTCCCCTCCTGTGAC | + |
|
Preference number: 3 (lower is better) Translates to: PSHRDDSVSWNV*QALPRFLPSCD Trigger: GTCACAGGAGGGGAGGAATCTGGGTAATGCTTGCCAGACATTCCAGGACACGGAGTCATCACGATGTGAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR GCA 72 bp | ATAATGCAGCCCTTAGACTGCAGAAGCATGCCTGCCTaGATCCTTTTGTGGCCTCACAGCACTGCCCTTGAG | + |
|
Preference number: 3 (lower is better) Translates to: IMQPLDCRSMPA*ILLWPHSTALE Trigger: CTCAAGGGCAGTGCTGTGAGGCCACAAAAGGATGCAGGCAGGCATGCTTCTGCAGTCTAAGGGCTGCATTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 72 bp | CTAGCCCTGGGGTTTGGATGCTTGGATGCTCCAAATTaGACCCTCCACTCTCTACTTTCCAGCACCCACAAT | + |
|
Preference number: 3 (lower is better) Translates to: LALGFGCLDAPN*TLHSLLSSTHN Trigger: ATTGTGGGTGCTGGAAAGTAGAGAGTGGAGGGTTCAATTTGGAGCATCCAAGCATCCAAACCCCAGGGCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR GCA 72 bp | TGGAGAACTGTGCAGGTGCCTGGGAGGATGCTGTGTTaGTACAAAGGATGTAACTCAACTCACAGGGCAACT | + |
|
Preference number: 3 (lower is better) Translates to: WRTVQVPGRMLC*YKGCNSTHRAT Trigger: AGTTGCCCTGTGAGTTGAGTTACATCCTTTGTAGCAACACAGCATCCTCCCAGGCACCTGCACAGTTCTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR GCA 72 bp | GTGGTTTGCCTATGTTTGTGTATCTTGGAGCAAAGCTaGTATGGAGAACTGTGCAGGTGCCTGGGAGGATGC | + |
|
Preference number: 3 (lower is better) Translates to: VVCLCLCILEQS*YGELCRCLGGC Trigger: GCATCCTCCCAGGCACCTGCACAGTTCTCCATAGCAGCTTTGCTCCAAGATACACAAACATAGGCAAACCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR GCA 72 bp | ATATATAATGCAGCCCTTAGACTGCAGAAGCATGCCTaGCTGCATCCTTTTGTGGCCTCACAGCACTGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: IYNAALRLQKHA*LHPFVASQHCP Trigger: AGGGCAGTGCTGTGAGGCCACAAAAGGATGCAGGCAGGCATGCTTCTGCAGTCTAAGGGCTGCATTATATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR GCA 72 bp | AGCTGCTATGGAGAACTGTGCAGGTGCCTGGGAGGATaGTGTGTTGCTACAAAGGATGTAACTCAACTCACA | + |
|
Preference number: 3 (lower is better) Translates to: SCYGELCRCLGG*CVATKDVTQLT Trigger: TGTGAGTTGAGTTACATCCTTTGTAGCAACACAGCATCCTCCCAGGCACCTGCACAGTTCTCCATAGCAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CCA 72 bp | TTGCCTATGTTTGTGTATCTTGGAGCAAAGCTGCTATaGAGAACTGTGCAGGTGCCTGGGAGGATGCTGTGT | + |
|
Preference number: 3 (lower is better) Translates to: LPMFVYLGAKLL*RTVQVPGRMLC Trigger: ACACAGCATCCTCCCAGGCACCTGCACAGTTCTCCATAGCAGCTTTGCTCCAAGATACACAAACATAGGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CAA 90 bp | CCCACAATTCTAATGGAAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCCTCACAGCACTGCCCTaGAGGCACCCTTCCTACCCT | + |
|
Preference number: 3 (lower is better) Translates to: PTILMEKKLSTVAFFSNFLTALP*RHPSYP Trigger: AGGGTAGGAAGGGTGCCTCAAGGGCAGTGCTGTGAG...GAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTTCCATTAGAATTGTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CAA 90 bp | GTCTGGCAAGCATTACCCAGATTCCTCCCCTCCTGTGACATATTTCTCAGCATTCCCCTTTCTACTTTATaGCCCTTCTCCTTGTGTCCA | + |
|
Preference number: 3 (lower is better) Translates to: VWQALPRFLPSCDIFLSIPLSTL*PFSLCP Trigger: TGGACACAAGGAGAAGGGCAATAAAGTAGAAAGGGG...AATGCTGAGAAATATGTCACAGGAGGGGAGGAATCTGGGTAATGCTTGCCAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 72 bp | CCTCCTTCAGGAACAAGAAGCAAATACTCCTGCCCTTaGCCACAATTTAGACCCAACCCTTTCCTACATCCT | + |
|
Preference number: 3 (lower is better) Translates to: PPSGTRSKYSCP*PQFRPNPFLHP Trigger: AGGATGTAGGAAAGGGTTGGGTCTAAATTGTGGTCAAGGGCAGGAGTATTTGCTTCTTGTTCCTGAAGGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CAA 90 bp | GTCTGGCAAGCATTACCCAGATTCCTCCCCTCCTGTGACATATTTCTCAGCATTACACCAGAAGTAGTTTaGAAATTGCTGGCTTTGTGC | + |
|
Preference number: 3 (lower is better) Translates to: VWQALPRFLPSCDIFLSITPEVV*KLLALC Trigger: GCACAAAGCCAGCAATTTCAAAACTACTTCTGGTGT...AATGCTGAGAAATATGTCACAGGAGGGGAGGAATCTGGGTAATGCTTGCCAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 72 bp | AGATGTGCTGACAAAAGGCATTGGGACTTTTTAGAGTaGCTGATTCCTCCTAAATGGCCAAGGAAGACGTGG | + |
|
Preference number: 3 (lower is better) Translates to: RCADKRHWDFLE*LIPPKWPRKTW Trigger: CCACGTCTTCCTTGGCCATTTAGGAGGAATCAGTCACTCTAAAAAGTCCCAATGCCTTTTGTCAGCACATCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| 3UTR TCA 72 bp | GCTCTTAGACAACAGATCCACATAACCAAACTAACATaGGCGAAAGAGTTAGCAACACAGCCTGTGGTTTGC | + |
|
Preference number: 3 (lower is better) Translates to: ALRQQIHITKLT*AKELATQPVVC Trigger: GCAAACCACAGGCTGTGTTGCTAACTCTTTCGCTCATGTTAGTTTGGTTATGTGGATCTGTTGTCTAAGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 72 bp | GGGACACAGGCTCTTACCCTGATAGTCTGTATCTGCTaGTTTGATTTAAAGATTCATCTGACCCTCAACCCA | + |
|
Preference number: 3 (lower is better) Translates to: GTQALTLIVCIC*FDLKIHLTLNP Trigger: TGGGTTGAGGGTCAGATGAATCTTTAAATCAAATCAGCAGATACAGACTATCAGGGTAAGAGCCTGTGTCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 72 bp | ATGCATTTGCTGAAAAACCCAACGGTGGCTGCCTTATaGCCAGCTTGCTGCTATTTTACTAACCAAATTCTG | + |
|
Preference number: 3 (lower is better) Translates to: MHLLKNPTVAAL*PACCYFTNQIL Trigger: CAGAATTTGGTTAGTAAAATAGCAGCAAGCTGGTCATAAGGCAGCCACCGTTGGGTTTTTCAGCAAATGCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CAA 90 bp | ATAGGCCTCCTTCAGGAACAAGAAGCAAATACTCCTGCCCTTGACCACAATTTACATTTGGCTTTTCCTTaGGAACTAGACTACTTATCG | + |
|
Preference number: 3 (lower is better) Translates to: IGLLQEQEANTPALDHNLHLAFP*ELDYLS Trigger: CGATAAGTAGTCTAGTTCCAAAGGAAAAGCCAAATG...TAAATTGTGGTCAAGGGCAGGAGTATTTGCTTCTTGTTCCTGAAGGAGGCCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 72 bp | ACAGGCTCTTACCCTGATAGTCTGTATCTGCTGATTTaGTTTAAAGATTCATCTGACCCTCAACCCAGAACT | + |
|
Preference number: 3 (lower is better) Translates to: TGSYPDSLYLLI*FKDSSDPQPRT Trigger: AGTTCTGGGTTGAGGGTCAGATGAATCTTTAAATCAAATCAGCAGATACAGACTATCAGGGTAAGAGCCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CAA 90 bp | ACAGCAAGATGCAGTTTGATTCTCCTTCATTCTGGGCTGTTCCTCTGTGTTTTCATTTGGTTCTGCCTTTaGAAAGGTGTCCTCTATATA | + |
|
Preference number: 3 (lower is better) Translates to: TARCSLILLHSGLFLCVFIWFCL*KGVLYI Trigger: TATATAGAGGACACCTTTCAAAAGGCAGAACCAAAT...GAAAACACAGAGGAACAGCCCAGAATGAAGGAGAATCAAACTGCATCTTGCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CAA 90 bp | CCCACAATTCTAATGGAAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCTTATTGCCCTTCTCCTaGTGTCCAGTTATCTTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: PTILMEKKLSTVAFFSNFLLPFS*CPVIFQ Trigger: TTGGAAGATAACTGGACACAAGGAGAAGGGCAATAA...GAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTTCCATTAGAATTGTGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CCA 72 bp | AAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCCTATaGGATCTTAAGATGAACTTCCTTGTCTTGCTTCAT | + |
|
Preference number: 3 (lower is better) Translates to: KLSTVAFFSNFL*DLKMNFLVLLH Trigger: ATGAAGCAAGACAAGGAAGTTCATCTTAAGATCCCATAGGAAATTAGAGAAAAAGGCAACTGTGGAGAGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR-3UTR CAA 90 bp | CCCACAATTCTAATGGAAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCAGCTTATCAATTGATTaGTTAATGGATGCCTACTGC | + |
|
Preference number: 3 (lower is better) Translates to: PTILMEKKLSTVAFFSNFSLSID*LMDAYC Trigger: GCAGTAGGCATCCATTAACAAATCAATTGATAAGCT...GAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTTCCATTAGAATTGTGGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR TCA 72 bp | TTAAACAGTAAATCGAGGATAAAACTCCAAAGCTACTaGCTGTGGGTTGTCTTCATCATTGTCTGCAATAAG | + |
|
Preference number: 3 (lower is better) Translates to: LNSKSRIKLQSY*LWVVFIIVCNK Trigger: CTTATTGCAGACAATGATGAAGACAACCCACAGTCAGTAGCTTTGGAGTTTTATCCTCGATTTACTGTTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR GCA 72 bp | AGTAAAGACAGTAAAATATTTCCATGTATTTGGTTCTaGCTTTTGAAAGGTGTCCTCTATATAGGAGAGAGT | + |
|
Preference number: 3 (lower is better) Translates to: SKDSKIFPCIWF*LLKGVLYIGES Trigger: ACTCTCTCCTATATAGAGGACACCTTTCAAAAGGCAGAACCAAATACATGGAAATATTTTACTGTCTTTACT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR GCA 72 bp | GTTAGCTTATCAATTGATTTGTTAATGGATGCCTACTaGTCTTCAGGAAATAATCGAATCCTTCTCATAGAA | + |
|
Preference number: 3 (lower is better) Translates to: VSLSIDLLMDAY*SSGNNRILLIE Trigger: TTCTATGAGAAGGATTCGATTATTTCCTGAAGAGCAGTAGGCATCCATTAACAAATCAATTGATAAGCTAAC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CAA 72 bp | CTGCCTGCATCCTTTTGTGGCCTCACAGCACTGCCCTaGAGGCACCCTTCCTACCCTTCTCACCCTGCACTG | + |
|
Preference number: 4 (lower is better) Translates to: LPASFCGLTALP*RHPSYPSHPAL Trigger: CAGTGCAGGGTGAGAAGGGTAGGAAGGGTGCCTCAAGGGCAGTGCTGTGAGGCCACAAAAGGATGCAGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CCA 90 bp | GTCTGGCAAGCATTACCCAGATTCCTCCCCTCCTGTGACATATTTCTCAGCATTAGCTTGTCCAGGGACTaGCGCCACTGCAGGACCTCC | + |
|
Preference number: 4 (lower is better) Translates to: VWQALPRFLPSCDIFLSISLSRD*RHCRTS Trigger: GGAGGTCCTGCAGTGGCGCCAGTCCCTGGACAAGCT...AATGCTGAGAAATATGTCACAGGAGGGGAGGAATCTGGGTAATGCTTGCCAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR GCA 90 bp | AAGAGGGAAACACAAGCAGCCCTGGGCTCACACATTAAGTTAGCTTCATACTTTAGGGACTGGCGCCACTaGAGGACCTCCTCCAGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: KRETQAALGSHIKLASYFRDWRH*RTSSSE Trigger: CTCACTGGAGGAGGTCCTGCAGTGGCGCCAGTCCCT...AAAGTATGAAGCTAACTTAATGTGTGAGCCCAGGGCTGCTTGTGTTTCCCTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR GCA 90 bp | AAGAGGGAAACACAAGCAGCCCTGGGCTCACACATTAAGTTAGCTTCATACTTTCTTTCCAGGCATGAGTaGGGCAGAGCTGCCAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: KRETQAALGSHIKLASYFLSRHE*GRAASP Trigger: GGGACTGGCAGCTCTGCCGCACTCATGCCTGGAAAG...AAAGTATGAAGCTAACTTAATGTGTGAGCCCAGGGCTGCTTGTGTTTCCCTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR GCA 90 bp | GCAGATGAAGATCTGAGAACAAGGTCTGTCTGTCAAAGAGTTTACATGGAGATCAGGGACTGGCGCCACTaGAGGACCTCCTCCAGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: ADEDLRTRSVCQRVYMEIRDWRH*RTSSSE Trigger: CTCACTGGAGGAGGTCCTGCAGTGGCGCCAGTCCCT...GATCTCCATGTAAACTCTTTGACAGACAGACCTTGTTCTCAGATCTTCATCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| CDS-3UTR TCA 90 bp | CCCACAATTCTAATGGAAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCGGCCCTTTCCAGGCATaGGTGCGGCAGAGCTGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: PTILMEKKLSTVAFFSNFGPFQA*VRQSCQ Trigger: CTGGCAGCTCTGCCGCACTCATGCCTGGAAAGGGCC...GAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTTCCATTAGAATTGTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR TCA 90 bp | ATTTCTGCAGATGAAGATCTGAGAACAAGGTCTGTCTGTCAAAGAGTTTACATGGGCCCTTTCCAGGCATaGGTGCGGCAGAGCTGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: ISADEDLRTRSVCQRVYMGPFQA*VRQSCQ Trigger: CTGGCAGCTCTGCCGCACTCATGCCTGGAAAGGGCC...CATGTAAACTCTTTGACAGACAGACCTTGTTCTCAGATCTTCATCTGCAGAAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| CDS-3UTR GCA 90 bp | AAGAGGGAAACACAAGCAGCCCTGGGCTCACACATTAAGTTAGCTTCATACTTTGGGCCAAGTCAAAGCTaGGAGGAGACGGTTCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: KRETQAALGSHIKLASYFGPSQS*EETVPP Trigger: TGGTGGAACCGTCTCCTCGCAGCTTTGACTTGGCCC...AAAGTATGAAGCTAACTTAATGTGTGAGCCCAGGGCTGCTTGTGTTTCCCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CCA 90 bp | ATAGGCCTCCTTCAGGAACAAGAAGCAAATACTCCTGCCCTTGACCACAATTTAAGGGCTTGTGTGCCTTaGCAGGCTTCTCTGGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: IGLLQEQEANTPALDHNLRACVP*QASLAS Trigger: AGAAGCCAGAGAAGCCTGCCAAGGCACACAAGCCCT...TAAATTGTGGTCAAGGGCAGGAGTATTTGCTTCTTGTTCCTGAAGGAGGCCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CCA 90 bp | TGCCCAGAAGAAAAAGTCAAAATCTGGACTGTGAATGAGCTTATAACATATCCCAGCTTGTCCAGGGACTaGCGCCACTGCAGGACCTCC | + |
|
Preference number: 4 (lower is better) Translates to: CPEEKVKIWTVNELITYPSLSRD*RHCRTS Trigger: GGAGGTCCTGCAGTGGCGCCAGTCCCTGGACAAGCT...GGGATATGTTATAAGCTCATTCACAGTCCAGATTTTGACTTTTTCTTCTGGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| CDS-3UTR CCA 90 bp | CAAGAAGCAAATACTCCTGCCCTTGACCACAATTTAGACCCAACCCTTTCCTACGCAGAGTCTGGCTTCTaGAGGAGAATTCCCAACTTG | + |
|
Preference number: 4 (lower is better) Translates to: QEANTPALDHNLDPTLSYAESGF*RRIPNL Trigger: CAAGTTGGGAATTCTCCTCCAGAAGCCAGACTCTGC...GTAGGAAAGGGTTGGGTCTAAATTGTGGTCAAGGGCAGGAGTATTTGCTTCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR GCA 90 bp | AAAGAAAACAACAGAACACAGATAGCCAGTTCTAAGCACTGTAAAAGATGTGCTCTTTCCAGGCATGAGTaGGGCAGAGCTGCCAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: KENNRTQIASSKHCKRCALSRHE*GRAASP Trigger: GGGACTGGCAGCTCTGCCGCACTCATGCCTGGAAAG...AGCACATCTTTTACAGTGCTTAGAACTGGCTATCTGTGTTCTGTTGTTTTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| CDS-3UTR CCA 90 bp | TCTGCAGATGAAGATCTGAGAACAAGGTCTGTCTGTCAAAGAGTTTACATGGAGGCAGAGTCTGGCTTCTaGAGGAGAATTCCCAACTTG | + |
|
Preference number: 4 (lower is better) Translates to: SADEDLRTRSVCQRVYMEAESGF*RRIPNL Trigger: CAAGTTGGGAATTCTCCTCCAGAAGCCAGACTCTGC...CTCCATGTAAACTCTTTGACAGACAGACCTTGTTCTCAGATCTTCATCTGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| 3UTR CAA 72 bp | AACTCCAAAGCTACTGACTGTGGGTTGTCTTCATCATaGTCTGCAATAAGCTTCCATTTAGAGTCCCGGATG | + |
|
Preference number: 4 (lower is better) Translates to: NSKATDCGLSSS*SAISFHLESRM Trigger: CATCCGGGACTCTAAATGGAAGCTTATTGCAGACAATGATGAAGACAACCCACAGTCAGTAGCTTTGGAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR TCA 90 bp | ACAGCAAGATGCAGTTTGATTCTCCTTCATTCTGGGCTGTTCCTCTGTGTTTTCACTTCAGGAAACTTTTaGAGCTGGCAAATCCATAGC | + |
|
Preference number: 4 (lower is better) Translates to: TARCSLILLHSGLFLCVFTSGNF*SWQIHS Trigger: GCTATGGATTTGCCAGCTTCAAAAGTTTCCTGAAGT...GAAAACACAGAGGAACAGCCCAGAATGAAGGAGAATCAAACTGCATCTTGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR TCA 90 bp | ACAGCAAGATGCAGTTTGATTCTCCTTCATTCTGGGCTGTTCCTCTGTGTTTTCGGGCCTCTGTCTGGATaGATTCTTCATAAATTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TARCSLILLHSGLFLCVFGPLSG*ILHKFA Trigger: AGCAAATTTATGAAGAATTCATCCAGACAGAGGCCC...GAAAACACAGAGGAACAGCCCAGAATGAAGGAGAATCAAACTGCATCTTGCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR GCA 90 bp | GTCTGGCAAGCATTACCCAGATTCCTCCCCTCCTGTGACATATTTCTCAGCATTTTCATAAATTTGCTTTaGCTTCTCCGCCATTTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: VWQALPRFLPSCDIFLSIFINLL*LLRHFD Trigger: ATCAAAATGGCGGAGAAGGCAAAGCAAATTTATGAA...AATGCTGAGAAATATGTCACAGGAGGGGAGGAATCTGGGTAATGCTTGCCAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CCA 90 bp | TTAAATAATGCATTTGCTGAAAAACCCAACGGTGGCTGCCTTATGACCAGCTTGTGGCTTCTCATTGTATaGAATGACAAGGTCAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: LNNAFAEKPNGGCLMTSLWLLIV*NDKVNS Trigger: GCTGTTGACCTTGTCATTCCATACAATGAGAAGCCA...CAAGCTGGTCATAAGGCAGCCACCGTTGGGTTTTTCAGCAAATGCATTATTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CCA 90 bp | ATTTCTGCAGATGAAGATCTGAGAACAAGGTCTGTCTGTCAAAGAGTTTACATGTGGCTTCTCATTGTATaGAATGACAAGGTCAACAGC | + |
|
Preference number: 4 (lower is better) Translates to: ISADEDLRTRSVCQRVYMWLLIV*NDKVNS Trigger: GCTGTTGACCTTGTCATTCCATACAATGAGAAGCCA...CATGTAAACTCTTTGACAGACAGACCTTGTTCTCAGATCTTCATCTGCAGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| 3UTR CAA 72 bp | GACAGTAAAATATTTCCATGTATTTGGTTCTGCCTTTaGAAAGGTGTCCTCTATATAGGAGAGAGTGTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: DSKIFPCIWFCL*KGVLYIGESVY Trigger: ATACACACTCTCTCCTATATAGAGGACACCTTTCAAAAGGCAGAACCAAATACATGGAAATATTTTACTGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| 3UTR CAA 72 bp | TTCCTACAAATAGTTTCTAGTCCAATTTTAATACATTaGGCTTTTCCTTTGGAACTAGACTACTTATCGCCC | + |
|
Preference number: 4 (lower is better) Translates to: FLQIVSSPILIH*AFPLELDYLSP Trigger: GGGCGATAAGTAGTCTAGTTCCAAAGGAAAAGCCAAATGTATTAAAATTGGACTAGAAACTATTTGTAGGAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CAA 90 bp | AAGAGGGAAACACAAGCAGCCCTGGGCTCACACATTAAGTTAGCTTCATACTTTTCCTCCAGTGAGGGCTaGTGTGCCTTGGCAGGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KRETQAALGSHIKLASYFSSSEG*CALAGF Trigger: GAAGCCTGCCAAGGCACACAAGCCCTCACTGGAGGA...AAAGTATGAAGCTAACTTAATGTGTGAGCCCAGGGCTGCTTGTGTTTCCCTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CAA 90 bp | AAGACGTGGCATCTGACATTTGGGTTAGCTCTTCAAGAAAGAGAATTTCTGCAGGAGGGCTTGTGTGCCTaGGCAGGCTTCTCTGGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KTWHLTFGLALQEREFLQEGLCA*AGFSGF Trigger: GAAGCCAGAGAAGCCTGCCAAGGCACACAAGCCCTC...CTGCAGAAATTCTCTTTCTTGAAGAGCTAACCCAAATGTCAGATGCCACGTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| CDS-3UTR CAA 90 bp | AAACCAGAACTCTTGTTCCCTCACATCGTGATGACTCCGTGTCCTGGAATGTCTTTGATCTTGATCTCCTaGGCCCTTTCCAGGCATGAG | + |
|
Preference number: 5 (lower is better) Translates to: KPELLFPHIVMTPCPGMSLILIS*ALSRHE Trigger: CTCATGCCTGGAAAGGGCCAAGGAGATCAAGATCAA...AGACATTCCAGGACACGGAGTCATCACGATGTGAGGGAACAAGAGTTCTGGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CAA 90 bp | CCTGGGAGGATGCTGTGTTGCTACAAAGGATGTAACTCAACTCACAGGGCAACTATTCCCAACTTGATCTaGATCTCCTTGGCCCTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: PGRMLCCYKGCNSTHRATIPNLI*ISLALS Trigger: GGAAAGGGCCAAGGAGATCAAGATCAAGTTGGGAAT...AGTTGCCCTGTGAGTTGAGTTACATCCTTTGTAGCAACACAGCATCCTCCCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS CCA 90 bp | TTCTCATTGTATGGAATGACAAGGTCAACAGCAGAGTCTGGCTTCTaGAGGAGAATTCCCAACTTGATCTTGATCTCCTTGGCCCTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: FSLYGMTRSTAESGF*RRIPNLILISLALS Trigger: GGAAAGGGCCAAGGAGATCAAGATCAAGTTGGGAATTCTCCTCCAGAAGCCAGACTCTGCTGTTGACCTTGTCATTCCATACAATGAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027997.9 ENSMUST00000152809.3 |
||
| CDS-3UTR CAA 90 bp | CAAGAAGCAAATACTCCTGCCCTTGACCACAATTTAGACCCAACCCTTTCCTACAGGAGAATTCCCAACTaGATCTTGATCTCCTTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: QEANTPALDHNLDPTLSYRRIPN*ILISLA Trigger: GGCCAAGGAGATCAAGATCAAGTTGGGAATTCTCCT...GTAGGAAAGGGTTGGGTCTAAATTGTGGTCAAGGGCAGGAGTATTTGCTTCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CAA 90 bp | AAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCCTATGGGATCTTAAGAGAGGGCTTGTGTGCCTaGGCAGGCTTCTCTGGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KRSSPQLPFSLISYGILREGLCA*AGFSGF Trigger: GAAGCCAGAGAAGCCTGCCAAGGCACACAAGCCCTC...TCTTAAGATCCCATAGGAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CAA 90 bp | AAAGAAAACAACAGAACACAGATAGCCAGTTCTAAGCACTGTAAAAGATGTGCTTCCTCCAGTGAGGGCTaGTGTGCCTTGGCAGGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KENNRTQIASSKHCKRCASSSEG*CALAGF Trigger: GAAGCCTGCCAAGGCACACAAGCCCTCACTGGAGGA...AGCACATCTTTTACAGTGCTTAGAACTGGCTATCTGTGTTCTGTTGTTTTCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| CDS-3UTR CAA 90 bp | TCTGCAGATGAAGATCTGAGAACAAGGTCTGTCTGTCAAAGAGTTTACATGGAGTTGATCTTGATCTCCTaGGCCCTTTCCAGGCATGAG | + |
|
Preference number: 5 (lower is better) Translates to: SADEDLRTRSVCQRVYMELILIS*ALSRHE Trigger: CTCATGCCTGGAAAGGGCCAAGGAGATCAAGATCAA...CTCCATGTAAACTCTTTGACAGACAGACCTTGTTCTCAGATCTTCATCTGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| CDS-3UTR CAA 90 bp | TCTGCAGATGAAGATCTGAGAACAAGGTCTGTCTGTCAAAGAGTTTACATGGAGATTCCCAACTTGATCTaGATCTCCTTGGCCCTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: SADEDLRTRSVCQRVYMEIPNLI*ISLALS Trigger: GGAAAGGGCCAAGGAGATCAAGATCAAGTTGGGAAT...CTCCATGTAAACTCTTTGACAGACAGACCTTGTTCTCAGATCTTCATCTGCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| CDS-3UTR CAA 90 bp | ATAGGCCTCCTTCAGGAACAAGAAGCAAATACTCCTGCCCTTGACCACAATTTATTCTCTGGCTTCTCATaGTATGGAATGACAAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: IGLLQEQEANTPALDHNLFSGFS*YGMTRS Trigger: TGACCTTGTCATTCCATACAATGAGAAGCCAGAGAA...TAAATTGTGGTCAAGGGCAGGAGTATTTGCTTCTTGTTCCTGAAGGAGGCCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CAA 90 bp | AAAAGAAGCTCTCCACAGTTGCCTTTTTCTCTAATTTCCTATGGGATCTTAAGAGCCTTCTCCGCCATTTaGATGGGGGACTTGATCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KRSSPQLPFSLISYGILRAFSAI*MGDLIF Trigger: GAAGATCAAGTCCCCCATCAAAATGGCGGAGAAGGC...TCTTAAGATCCCATAGGAAATTAGAGAAAAAGGCAACTGTGGAGAGCTTCTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||
| CDS-3UTR CAA 90 bp | GCAGATGAAGATCTGAGAACAAGGTCTGTCTGTCAAAGAGTTTACATGGAGATCTTCTCTGGCTTCTCATaGTATGGAATGACAAGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: ADEDLRTRSVCQRVYMEIFSGFS*YGMTRS Trigger: TGACCTTGTCATTCCATACAATGAGAAGCCAGAGAA...GATCTCCATGTAAACTCTTTGACAGACAGACCTTGTTCTCAGATCTTCATCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152809.3 |
||
| CDS GCA 72 bp | CTGTTCTGGAGAAGCTTGTCCAGGGACTGGCGCCACTaGAGGACCTCCTCCAGTGAGGGCTTGTGTGCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: LFWRSLSRDWRH*RTSSSEGLCAL Trigger: CAAGGCACACAAGCCCTCACTGGAGGAGGTCCTGCAGTGGCGCCAGTCCCTGGACAAGCTTCTCCAGAACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027997.9 ENSMUST00000152809.3 |
||
| CDS CAA 90 bp | GACTGGCGCCACTGCAGGACCTCCTCCAGTGAGGGCTTGTGTGCCTaGGCAGGCTTCTCTGGCTTCTCATTGTATGGAATGACAAGGTCA | + |
|
Preference number: 6 (lower is better) Translates to: DWRHCRTSSSEGLCA*AGFSGFSLYGMTRS Trigger: TGACCTTGTCATTCCATACAATGAGAAGCCAGAGAAGCCTGCCAAGGCACACAAGCCCTCACTGGAGGAGGTCCTGCAGTGGCGCCAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027997.9 ENSMUST00000152809.3 |
||
| CDS CAA 72 bp | CACTGCAGGACCTCCTCCAGTGAGGGCTTGTGTGCCTaGGCAGGCTTCTCTGGCTTCTCATTGTATGGAATG | + |
|
Preference number: 6 (lower is better) Translates to: HCRTSSSEGLCA*AGFSGFSLYGM Trigger: CATTCCATACAATGAGAAGCCAGAGAAGCCTGCCAAGGCACACAAGCCCTCACTGGAGGAGGTCCTGCAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027997.9 ENSMUST00000152809.3 |
||
| CDS CAA 90 bp | ACAAGGTCAACAGCAGAGTCTGGCTTCTGGAGGAGAATTCCCAACTaGATCTTGATCTCCTTGGCCCTTTCCAGGCATGAGTGCGGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: TRSTAESGFWRRIPN*ILISLALSRHECGR Trigger: TCTGCCGCACTCATGCCTGGAAAGGGCCAAGGAGATCAAGATCAAGTTGGGAATTCTCCTCCAGAAGCCAGACTCTGCTGTTGACCTTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027997.9 ENSMUST00000152809.3 |
||
| CDS CCA 72 bp | TCCACCAGGTTCTTCATGGTGATGTCTTTAGTGAAGTaGTCAATGTTCACCTCTTTAGGGGCCTCTGTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: STRFFMVMSLVK*SMFTSLGASVW Trigger: CCAGACAGAGGCCCCTAAAGAGGTGAACATTGACCACTTCACTAAAGACATCACCATGAAGAACCTGGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027997.9 |
||