Pregenerated sensors for RGS21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000098509Ensembl transcript IDs: ENSMUST00000184189.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTGAAAACTTTGGTCTCTGGCACTGTCAGGCCTATGTACAAGTGTGCACACATCCTCAACTCGATGGCATaGAGATTTGTATATTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: LKTLVSGTVRPMYKCAHILNSMA*RFVYFL Trigger: CAGAAAATATACAAATCTTCATGCCATCGAGTTGAG...GATGTGTGCACACTTGTACATAGGCCTGACAGTGCCAGAGACCAAAGTTTTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| 3UTR-3UTR GCA 90 bp | AGGCTATTACTGAGCCAAGTAATAGATTTTGAAAACTTTGGTCTCTGGCACTGTGCCTATGTACAAGTGTaGACACATCCATCACTTTTC | + |
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Preference number: 2 (lower is better) Translates to: RLLLSQVIDFENFGLWHCAYVQV*THPSLF Trigger: GAAAAGTGATGGATGTGTGCACACTTGTACATAGGC...ACAGTGCCAGAGACCAAAGTTTTCAAAATCTATTACTTGGCTCAGTAATAGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| 3UTR GCA 72 bp | TTTGGTCTCTGGCACTGTCAGGCCTATGTACAAGTGTaGACACATCCATCACTTTTCCTTTTTAACTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: FGLWHCQAYVQV*THPSLFLFNFK Trigger: TTTAAAGTTAAAAAGGAAAAGTGATGGATGTGTGCACACTTGTACATAGGCCTGACAGTGCCAGAGACCAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| CDS-3UTR GCA 90 bp | GGCACTGTCAGGCCTATGTACAAGTGTGCACACATCCATCACTTTTCCTTTTTACATATTTTCAGACCATaGCAGTGTTTCCGTAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: GTVRPMYKCAHIHHFSFLHIFRP*QCFRSW Trigger: CCAACTACGGAAACACTGGCATGGTCTGAAAATATG...TAAAAAGGAAAAGTGATGGATGTGTGCACACTTGTACATAGGCCTGACAGTGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| CDS-3UTR TCA 90 bp | GTAATAGATTTTGAAAACTTTGGTCTCTGGCACTGTCAGGCCTATGTACAAGTGGGCAGCCATCTTTTATaGTTTCCAACCTGTTGGCTA | + |
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Preference number: 4 (lower is better) Translates to: VIDFENFGLWHCQAYVQVGSHLL*FPTCWL Trigger: TAGCCAACAGGTTGGAAATCATAAAAGATGGCTGCC...CACTTGTACATAGGCCTGACAGTGCCAGAGACCAAAGTTTTCAAAATCTATTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| CDS-3UTR CCA 90 bp | AGGCTATTACTGAGCCAAGTAATAGATTTTGAAAACTTTGGTCTCTGGCACTGTCAGTGTTTCCGTAGTTaGAGACCTGTAGAAACAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RLLLSQVIDFENFGLWHCQCFRS*RPVETA Trigger: TGCTGTTTCTACAGGTCTCCAACTACGGAAACACTG...ACAGTGCCAGAGACCAAAGTTTTCAAAATCTATTACTTGGCTCAGTAATAGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| CDS-3UTR CCA 90 bp | TTGAAAACTTTGGTCTCTGGCACTGTCAGGCCTATGTACAAGTGTGCACACATCCTCATCAAAGCATTTTaGAGTTGGTTCAGCAATATT | + |
|
Preference number: 4 (lower is better) Translates to: LKTLVSGTVRPMYKCAHILIKAF*SWFSNI Trigger: AATATTGCTGAACCAACTCCAAAATGCTTTGATGAG...GATGTGTGCACACTTGTACATAGGCCTGACAGTGCCAGAGACCAAAGTTTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| CDS-3UTR CCA 90 bp | AGGCTATTACTGAGCCAAGTAATAGATTTTGAAAACTTTGGTCTCTGGCACTGTGAGGGAATGAATCCTTaGCCATCAGACTATAGATTA | + |
|
Preference number: 4 (lower is better) Translates to: RLLLSQVIDFENFGLWHCEGMNP*PSDYRL Trigger: TAATCTATAGTCTGATGGCCAAGGATTCATTCCCTC...ACAGTGCCAGAGACCAAAGTTTTCAAAATCTATTACTTGGCTCAGTAATAGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| CDS-3UTR TCA 90 bp | ATTTTAAATGTTGTATATAATGCTAGGCAGTCCTCAACTCGATGGCATGAAGATTTCAGCAATATTCCTTaGGATGAGGTCTCTGGTACT | + |
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Preference number: 4 (lower is better) Translates to: ILNVVYNARQSSTRWHEDFSNIP*DEVSGT Trigger: AGTACCAGAGACCTCATCTCAAGGAATATTGCTGAA...ATCTTCATGCCATCGAGTTGAGGACTGCCTAGCATTATATACAACATTTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| 3UTR CAA 72 bp | GATAGTCATTGCTACATTATTAGTCATAATCTGCAATaGATTGTGCCTCCTTGTTCTCGGTTCCTCTTAGTA | + |
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Preference number: 4 (lower is better) Translates to: DSHCYIISHNLQ*IVPPCSRFLLV Trigger: TACTAAGAGGAACCGAGAACAAGGAGGCACAATCAATTGCAGATTATGACTAATAATGTAGCAATGACTATC 38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| CDS-3UTR CAA 90 bp | ATTTTAAATGTTGTATATAATGCTAGGCAGTCCTCAACTCGATGGCATGAAGATCCTCATCAAAGCATTTaGGAGTTGGTTCAGCAATAT | + |
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Preference number: 5 (lower is better) Translates to: ILNVVYNARQSSTRWHEDPHQSI*ELVQQY Trigger: ATATTGCTGAACCAACTCCAAAATGCTTTGATGAGG...ATCTTCATGCCATCGAGTTGAGGACTGCCTAGCATTATATACAACATTTAAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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| CDS GCA 72 bp | GTCTCTGGTACTGAAGTCAATGTTAATCTCTTTTGGTaGATCAGCTACGATGAATTCGGAGTAAATCGTCTT | + |
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Preference number: 6 (lower is better) Translates to: VSGTEVNVNLFW*ISYDEFGVNRL Trigger: AAGACGATTTACTCCGAATTCATCGTAGCTGATGCACCAAAAGAGATTAACATTGACTTCAGTACCAGAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184189.3 |
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