Pregenerated sensors for RGS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026360Ensembl transcript IDs: ENSMUST00000027606.4, ENSMUST00000127206.8, ENSMUST00000153527.3
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTGAATGCAGCCAGCCCATATTTACTGGCCAGCAGTTCATCAAATaGTTCTGCCCAGAGCTGCGCTTCCTCAGGAGAAGGCCTGCAAGA | + |
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Preference number: 1 (lower is better) Translates to: PECSQPIFTGQQFIK*FCPELRFLRRRPAR Trigger: TCTTGCAGGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAACTGCTGGCCAGTAAATATGGGCTGGCTGCATTCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR TCA 90 bp | AGAACACATTCAGAGGCCTGTTCCCTCCCTCTGTTCTTCACACAGTaGGGGAAGCCGTTCTCACACAGAGCCTCTCCTAGGTTGCTGACT | + |
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Preference number: 1 (lower is better) Translates to: RTHSEACSLPLFFTQ*GKPFSHRASPRLLT Trigger: AGTCAGCAACCTAGGAGAGGCTCTGTGTGAGAACGGCTTCCCTCACTGTGTGAAGAACAGAGGGAGGGAACAGGCCTCTGAATGTGTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR GCA 90 bp | CATCAAATGCTTCTGCCCAGAGCTGCGCTTCCTCAGGAGAAGGCCTaGAAGAGAAGTTCCGCAAATGAGCTCCCCAACACACATCAGTTC | + |
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Preference number: 1 (lower is better) Translates to: HQMLLPRAALPQEKA*KRSSANELPNTHQF Trigger: GAACTGATGTGTGTTGGGGAGCTCATTTGCGGAACTTCTCTTGCAGGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR GCA 90 bp | TGCAGCCAGCCCATATTTACTGGCCAGCAGTTCATCAAATGCTTCTaGCCAGAGCTGCGCTTCCTCAGGAGAAGGCCTGCAAGAGAAGTT | + |
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Preference number: 1 (lower is better) Translates to: CSQPIFTGQQFIKCF*PELRFLRRRPAREV Trigger: AACTTCTCTTGCAGGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAACTGCTGGCCAGTAAATATGGGCTGGCTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR CCA 90 bp | AGTTTAGCTGCCCGCAAGACAGTTTTTGGCACTCGTAACAGACGCTaGTTCTACAGCACGGCACAGCATTCGGTCCATCACACACACCAT | + |
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Preference number: 1 (lower is better) Translates to: SLAARKTVFGTRNRR*FYSTAQHSVHHTHH Trigger: ATGGTGTGTGTGATGGACCGAATGCTGTGCCGTGCTGTAGAACCAGCGTCTGTTACGAGTGCCAAAAACTGTCTTGCGGGCAGCTAAACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 90 bp | CACAGTGAGGGAAGCCGTTCTCACACAGAGCCTCTCCTAGGTTGCTaGCTTCCTGATTCACTACCCAACATTGAATCAATAGTTCTGAGC | + |
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Preference number: 1 (lower is better) Translates to: HSEGSRSHTEPLLGC*LPDSLPNIESIVLS Trigger: GCTCAGAACTATTGATTCAATGTTGGGTAGTGAATCAGGAAGTCAGCAACCTAGGAGAGGCTCTGTGTGAGAACGGCTTCCCTCACTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 90 bp | GTCCACTTCCCTGGGGAAGTGGCAATTGCATTGATAGGTGTGTGGTaGGCAAGAGCTAAAATTACACTGCGGAGAGGAACCATTAGACAG | + |
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Preference number: 1 (lower is better) Translates to: VHFPGEVAIALIGVW*ARAKITLRRGTIRQ Trigger: CTGTCTAATGGTTCCTCTCCGCAGTGTAATTTTAGCTCTTGCTCACCACACACCTATCAATGCAATTGCCACTTCCCCAGGGAAGTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 90 bp | TTCTGTACCTGTTATATGTCATTCTGGCTTCTGGTGATACAGAAATaGGCCAGGTTGTCCCTCCTGTACTTGTGCTTGTTCCAGACATCT | + |
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Preference number: 1 (lower is better) Translates to: FCTCYMSFWLLVIQK*ARLSLLYLCLFQTS Trigger: AGATGTCTGGAACAAGCACAAGTACAGGAGGGACAACCTGGCTCATTTCTGTATCACCAGAAGCCAGAATGACATATAACAGGTACAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 90 bp | AGAATTCAATGTTTTCTTCACAGAACTCGGACTTTAAAAACGCCCTaGATGCAGCCAGCCCATATTTACTGGCCAGCAGTTCATCAAATG | + |
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Preference number: 1 (lower is better) Translates to: RIQCFLHRTRTLKTP*MQPAHIYWPAVHQM Trigger: CATTTGATGAACTGCTGGCCAGTAAATATGGGCTGGCTGCATTCAGGGCGTTTTTAAAGTCCGAGTTCTGTGAAGAAAACATTGAATTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR TCA 90 bp | CAGCTGTTGATTTCTCAGTGGGCAGGTACAACAATTGATCCACACTaGTACCTCTTTGCTAGAAAGTTCTTTTCTCTGATAGCTGACATA | + |
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Preference number: 1 (lower is better) Translates to: QLLISQWAGTTIDPH*YLFARKFFSLIADI Trigger: TATGTCAGCTATCAGAGAAAAGAACTTTCTAGCAAAGAGGTATCAGTGTGGATCAATTGTTGTACCTGCCCACTGAGAAATCAACAGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 90 bp | TATTTATTTTATTCTGTACCTGTTATATGTCATTCTGGCTTCTGGTaGTACAGAAATGAGCCAGGTTGTCCCTCCTGTACTTGTGCTTGT | + |
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Preference number: 1 (lower is better) Translates to: YLFYSVPVICHSGFW*YRNEPGCPSCTCAC Trigger: ACAAGCACAAGTACAGGAGGGACAACCTGGCTCATTTCTGTATCACCAGAAGCCAGAATGACATATAACAGGTACAGAATAAAATAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR TCA 90 bp | AGCAAATGGAAGGCGGCCAGCAATGCTGGTGCAGGGGATTGTGTACCAGGTTGGCATTCTGGCTTCTGGTaGTACAGAAATGAGCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: SKWKAASNAGAGDCVPGWHSGFW*YRNEPG Trigger: ACCTGGCTCATTTCTGTATCACCAGAAGCCAGAATG...CCAACCTGGTACACAATCCCCTGCACCAGCATTGCTGGCCGCCTTCCATTTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR CCA 90 bp | AGAACTGACCAGGTTCTTGCCCATGCCAGGTGTCTGGAACCAAGCATACGCCAGCACAGCCTTTGCTCTTaGGAGACAGAATGGAATGTC | + |
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Preference number: 2 (lower is better) Translates to: RTDQVLAHARCLEPSIRQHSLCS*ETEWNV Trigger: GACATTCCATTCTGTCTCCCAAGAGCAAAGGCTGTG...CTGGCGTATGCTTGGTTCCAGACACCTGGCATGGGCAAGAACCTGGTCAGTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR GCA 90 bp | AGGATAAGAATTGTTCTCCATCAAACTGTACACCCTCTTCTGAGCTGTGGTGAAGCTTCTGCCCAGAGCTaGGCTTCCTCAGGAGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: RIRIVLHQTVHPLLSCGEASAQS*ASSGEG Trigger: GCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGC...TTCACCACAGCTCAGAAGAGGGTGTACAGTTTGATGGAGAACAATTCTTATCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR-3UTR GCA 90 bp | GCAAGAGCTAAAATTACACTGCGGAGAGGAACCATTAGACAGAAAGATTCCCTGGCAGGTCACAGCCTTTaGTCTTGGGAGACAGAATGG | + |
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Preference number: 2 (lower is better) Translates to: ARAKITLRRGTIRQKDSLAGHSL*SWETEW Trigger: CCATTCTGTCTCCCAAGAGCAAAGGCTGTGACCTGC...CAGGGAATCTTTCTGTCTAATGGTTCCTCTCCGCAGTGTAATTTTAGCTCTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR GCA 90 bp | CACTTGCTTTCTTCTTCAGTGTTACCCAGAGTAGCACAGATTATTAGCCAAATGCCAGGTTCTTGCCCATaGCAGGTGTCTGGAACCAAG | + |
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Preference number: 2 (lower is better) Translates to: HLLSSSVLPRVAQIISQMPGSCP*QVSGTK Trigger: CTTGGTTCCAGACACCTGGCATGGGCAAGAACCTGG...CATTTGGCTAATAATCTGTGCTACTCTGGGTAACACTGAAGAAGAAAGCAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR CAA 90 bp | GTACACCCTCTTCTGAGCTGTGGTGAAGCAGCCACTTGTAGCCTCTaGGATATTTTGGGCAATCAGAGATTTCGTTTGGAAGTCTATGTT | + |
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Preference number: 2 (lower is better) Translates to: VHPLLSCGEAATCSL*DILGNQRFRLEVYV Trigger: AACATAGACTTCCAAACGAAATCTCTGATTGCCCAAAATATCCAAGAGGCTACAAGTGGCTGCTTCACCACAGCTCAGAAGAGGGTGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR CAA 90 bp | CGTCAGCGGTTGGTAAGTGACAGGAGGCAAGATCAGGTTTGTGTGTaGAAAGCATCACTAGCGTTAAGAAGGAACTATATAAGGTGTAGG | + |
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Preference number: 2 (lower is better) Translates to: RQRLVSDRRQDQVCV*KASLALRRNYIRCR Trigger: CCTACACCTTATATAGTTCCTTCTTAACGCTAGTGATGCTTTCAACACACAAACCTGATCTTGCCTCCTGTCACTTACCAACCGCTGACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR TCA 90 bp | GAAGAAAGAACTGACCAGGTTCTTGCCCATGCCAGGTGTCTGGAACCAAGCATATTCACTACCCAACATTaGATCAATAGTTCTGAGCGA | + |
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Preference number: 2 (lower is better) Translates to: EERTDQVLAHARCLEPSIFTTQH*INSSER Trigger: TCGCTCAGAACTATTGATTCAATGTTGGGTAGTGAA...TATGCTTGGTTCCAGACACCTGGCATGGGCAAGAACCTGGTCAGTTCTTTCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR TCA 90 bp | CCACATTTACACGAACCTTTTCCTTTTCTTAGGCTGTTTGGCCCTGTAACTTTACCTCTCCTAGGTTGCTaGCTTCCTGATTCACTACCC | + |
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Preference number: 2 (lower is better) Translates to: PHLHEPFPFLRLFGPVTLPLLGC*LPDSLP Trigger: GGGTAGTGAATCAGGAAGTCAGCAACCTAGGAGAGG...TAAAGTTACAGGGCCAAACAGCCTAAGAAAAGGAAAAGGTTCGTGTAAATGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR GCA 90 bp | ATAAGTCCTGGTAGAATTCGGACTCCAAGAACCGAGGATAAGAATTGTTCTCCATTCATCAAATGCTTCTaGCCAGAGCTGCGCTTCCTC | + |
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Preference number: 2 (lower is better) Translates to: ISPGRIRTPRTEDKNCSPFIKCF*PELRFL Trigger: GAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAA...TGGAGAACAATTCTTATCCTCGGTTCTTGGAGTCCGAATTCTACCAGGACTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR-3UTR CCA 90 bp | GCAAGAGCTAAAATTACACTGCGGAGAGGAACCATTAGACAGAAAGATTCCCTGTCTTGGGAGACAGAATaGAATGTCCTTTGTGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: ARAKITLRRGTIRQKDSLSWETE*NVLCVW Trigger: CCACACACAAAGGACATTCCATTCTGTCTCCCAAGA...CAGGGAATCTTTCTGTCTAATGGTTCCTCTCCGCAGTGTAATTTTAGCTCTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR GCA 90 bp | ATCAGAGATTTCGTTTGGAAGTCTATGTTTATCTCTTTGGGAGCTTCCTTCTCTCCTCAGGAGAAGGCCTaGAAGAGAAGTTCCGCAAAT | + |
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Preference number: 2 (lower is better) Translates to: IRDFVWKSMFISLGASFSPQEKA*KRSSAN Trigger: ATTTGCGGAACTTCTCTTGCAGGCCTTCTCCTGAGG...AGAGAAGGAAGCTCCCAAAGAGATAAACATAGACTTCCAAACGAAATCTCTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR-3UTR GCA 90 bp | GCAAGAGCTAAAATTACACTGCGGAGAGGAACCATTAGACAGAAAGATTCCCTGTTTCATCTCAAACTCTaGTTTCCCGACAAGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: ARAKITLRRGTIRQKDSLFHLKL*FPDKEE Trigger: TTCCTCCTTGTCGGGAAAGCAGAGTTTGAGATGAAA...CAGGGAATCTTTCTGTCTAATGGTTCCTCTCCGCAGTGTAATTTTAGCTCTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR CAA 90 bp | CTTCTGAGCTGTGGTGAAGCAGCCACTTGTAGCCTCTTGGATATTTaGGGCAATCAGAGATTTCGTTTGGAAGTCTATGTTTATCTCTTT | + |
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Preference number: 2 (lower is better) Translates to: LLSCGEAATCSLLDI*GNQRFRLEVYVYLF Trigger: AAAGAGATAAACATAGACTTCCAAACGAAATCTCTGATTGCCCAAAATATCCAAGAGGCTACAAGTGGCTGCTTCACCACAGCTCAGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR-3UTR GCA 90 bp | CTTGTGATCAGTTATAACTGTCAACTTTGGAGAAACTTAAATGTTAGGACAGCTGGCTCTTCTCACTTGTaGTTGAATGTGGTGTATTCA | + |
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Preference number: 2 (lower is better) Translates to: LVISYNCQLWRNLNVRTAGSSHL*LNVVYS Trigger: TGAATACACCACATTCAAGCACAAGTGAGAAGAGCC...AGCTGTCCTAACATTTAAGTTTCTCCAAAGTTGACAGTTATAACTGATCACAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153527.3 |
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| 3UTR TCA 72 bp | TCAGAGGCCTGTTCCCTCCCTCTGTTCTTCACACAGTaGGGGAAGCCGTTCTCACACAGAGCCTCTCCTAGG | + |
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Preference number: 3 (lower is better) Translates to: SEACSLPLFFTQ*GKPFSHRASPR Trigger: CCTAGGAGAGGCTCTGTGTGAGAACGGCTTCCCTCACTGTGTGAAGAACAGAGGGAGGGAACAGGCCTCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR GCA 72 bp | CTTCTGCCCAGAGCTGCGCTTCCTCAGGAGAAGGCCTaGAAGAGAAGTTCCGCAAATGAGCTCCCCAACACA | + |
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Preference number: 3 (lower is better) Translates to: LLPRAALPQEKA*KRSSANELPNT Trigger: TGTGTTGGGGAGCTCATTTGCGGAACTTCTCTTGCAGGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR CCA 72 bp | TCCCTGGGGCTGAGGGACATAGCATCTTCAAGCAAATaGAAGGCGGCCAGCAATGCTGGTGCAGGGGATTGT | + |
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Preference number: 3 (lower is better) Translates to: SLGLRDIASSSK*KAASNAGAGDC Trigger: ACAATCCCCTGCACCAGCATTGCTGGCCGCCTTCCATTTGCTTGAAGATGCTATGTCCCTCAGCCCCAGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR CCA 72 bp | GCCCGCAAGACAGTTTTTGGCACTCGTAACAGACGCTaGTTCTACAGCACGGCACAGCATTCGGTCCATCAC | + |
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Preference number: 3 (lower is better) Translates to: ARKTVFGTRNRR*FYSTAQHSVHH Trigger: GTGATGGACCGAATGCTGTGCCGTGCTGTAGAACCAGCGTCTGTTACGAGTGCCAAAAACTGTCTTGCGGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR CAA 90 bp | AGAACTGACCAGGTTCTTGCCCATGCCAGGTGTCTGGAACCAAGCATACGCCAGCCCACTTCTCAGCTGTaGATTTCTCAGTGGGCAGGT | + |
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Preference number: 3 (lower is better) Translates to: RTDQVLAHARCLEPSIRQPTSQL*ISQWAG Trigger: ACCTGCCCACTGAGAAATCAACAGCTGAGAAGTGGG...CTGGCGTATGCTTGGTTCCAGACACCTGGCATGGGCAAGAACCTGGTCAGTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 72 bp | GGGAGGGCCCAGGGACACAAAGCGATGGGATGTCATTaGGTTAAGGTCTTCCAATTTCAAGCTGAGGGTGCC | + |
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Preference number: 3 (lower is better) Translates to: GRAQGHKAMGCH*VKVFQFQAEGA Trigger: GGCACCCTCAGCTTGAAATTGGAAGACCTTAACTCAATGACATCCCATCGCTTTGTGTCCCTGGGCCCTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR GCA 72 bp | CCCATATTTACTGGCCAGCAGTTCATCAAATGCTTCTaGCCAGAGCTGCGCTTCCTCAGGAGAAGGCCTGCA | + |
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Preference number: 3 (lower is better) Translates to: PIFTGQQFIKCF*PELRFLRRRPA Trigger: TGCAGGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAACTGCTGGCCAGTAAATATGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR CCA 72 bp | AAAGAACTGACCAGGTTCTTGCCCATGCCAGGTGTCTaGAACCAAGCATACGCCAGGCAGGCCCACATTTAC | + |
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Preference number: 3 (lower is better) Translates to: KELTRFLPMPGV*NQAYARQAHIY Trigger: GTAAATGTGGGCCTGCCTGGCGTATGCTTGGTTCCAGACACCTGGCATGGGCAAGAACCTGGTCAGTTCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR CAA 90 bp | GAAGAAAGAACTGACCAGGTTCTTGCCCATGCCAGGTGTCTGGAACCAAGCATATCACAGCCTTTGCTCTaGGGAGACAGAATGGAATGT | + |
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Preference number: 3 (lower is better) Translates to: EERTDQVLAHARCLEPSISQPLL*GDRMEC Trigger: ACATTCCATTCTGTCTCCCAAGAGCAAAGGCTGTGA...TATGCTTGGTTCCAGACACCTGGCATGGGCAAGAACCTGGTCAGTTCTTTCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR CAA 90 bp | GCAAGAGCTAAAATTACACTGCGGAGAGGAACCATTAGACAGAAAGATTCCCTGGGCAGGTCACAGCCTTaGCTCTTGGGAGACAGAATG | + |
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Preference number: 3 (lower is better) Translates to: ARAKITLRRGTIRQKDSLGRSQP*LLGDRM Trigger: CATTCTGTCTCCCAAGAGCAAAGGCTGTGACCTGCC...CAGGGAATCTTTCTGTCTAATGGTTCCTCTCCGCAGTGTAATTTTAGCTCTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR CAA 90 bp | TGGAAGGCGGCCAGCAATGCTGGTGCAGGGGATTGTGTACCAGGTTGGAACGTACCAGATATAGAAAATTaGCTTCAGAAAGGGAATTCC | + |
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Preference number: 3 (lower is better) Translates to: WKAASNAGAGDCVPGWNVPDIEN*LQKGNS Trigger: GGAATTCCCTTTCTGAAGCAAATTTTCTATATCTGG...TACGTTCCAACCTGGTACACAATCCCCTGCACCAGCATTGCTGGCCGCCTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR GCA 72 bp | AAGGCAGGAGGTGCAGGAAACTTGGGGTTTTCGTATTaGCCCATCACAGAAGAAAGAACTGACCAGGTTCTT | + |
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Preference number: 3 (lower is better) Translates to: KAGGAGNLGFSY*PITEERTDQVL Trigger: AAGAACCTGGTCAGTTCTTTCTTCTGTGATGGGGCAATACGAAAACCCCAAGTTTCCTGCACCTCCTGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 72 bp | GGAAGCCGTTCTCACACAGAGCCTCTCCTAGGTTGCTaGCTTCCTGATTCACTACCCAACATTGAATCAATA | + |
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Preference number: 3 (lower is better) Translates to: GSRSHTEPLLGC*LPDSLPNIESI Trigger: TATTGATTCAATGTTGGGTAGTGAATCAGGAAGTCAGCAACCTAGGAGAGGCTCTGTGTGAGAACGGCTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 72 bp | CTTCCTCGAAGCAAGCATTTCCCACTTCTCAGCTGTTaGTTTCTCAGTGGGCAGGTACAACAATTGATCCAC | + |
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Preference number: 3 (lower is better) Translates to: LPRSKHFPLLSC*FLSGQVQQLIH Trigger: GTGGATCAATTGTTGTACCTGCCCACTGAGAAATCAACAGCTGAGAAGTGGGAAATGCTTGCTTCGAGGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR CAA 90 bp | AAGCGATGGGATGTCATTGAGTTAAGGTCTTCCAATTTCAAGCTGAGGGTGCCCGTGCAAGCAAAGCACTaGCTTTCTTCTTCAGTGTTA | + |
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Preference number: 3 (lower is better) Translates to: KRWDVIELRSSNFKLRVPVQAKH*LSSSVL Trigger: TAACACTGAAGAAGAAAGCAAGTGCTTTGCTTGCAC...GGGCACCCTCAGCTTGAAATTGGAAGACCTTAACTCAATGACATCCCATCGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 72 bp | TGTTTTCTTCACAGAACTCGGACTTTAAAAACGCCCTaGATGCAGCCAGCCCATATTTACTGGCCAGCAGTT | + |
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Preference number: 3 (lower is better) Translates to: CFLHRTRTLKTP*MQPAHIYWPAV Trigger: AACTGCTGGCCAGTAAATATGGGCTGGCTGCATTCAGGGCGTTTTTAAAGTCCGAGTTCTGTGAAGAAAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
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| 3UTR GCA 72 bp | CCAACAACATTGCATCGGATCTTTCATCTCAAACTCTaGTTTCCCGACAAGGAGGAAGAACACATTCAGAGG | + |
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Preference number: 3 (lower is better) Translates to: PTTLHRIFHLKL*FPDKEEEHIQR Trigger: CCTCTGAATGTGTTCTTCCTCCTTGTCGGGAAAGCAGAGTTTGAGATGAAAGATCCGATGCAATGTTGTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR CCA 72 bp | TGTACCAGGTTGGAACGTAAGAGGAAGTCAGCCCTGTaGGGTTATGCTATATTAGGAATGCTGCTTTCATCT | + |
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Preference number: 3 (lower is better) Translates to: CTRLERKRKSAL*GYAILGMLLSS Trigger: AGATGAAAGCAGCATTCCTAATATAGCATAACCCCACAGGGCTGACTTCCTCTTACGTTCCAACCTGGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 72 bp | TGTTATATGTCATTCTGGCTTCTGGTGATACAGAAATaGGCCAGGTTGTCCCTCCTGTACTTGTGCTTGTTC | + |
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Preference number: 3 (lower is better) Translates to: CYMSFWLLVIQK*ARLSLLYLCLF Trigger: GAACAAGCACAAGTACAGGAGGGACAACCTGGCTCATTTCTGTATCACCAGAAGCCAGAATGACATATAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR TCA 72 bp | ATCAGACTGGGGACTGAGGAAAAGCTGCACAGAGTGTaGGGTAAATGGAACTTAATGGCAAAGGAGATTTGT | + |
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Preference number: 3 (lower is better) Translates to: IRLGTEEKLHRV*GKWNLMAKEIC Trigger: ACAAATCTCCTTTGCCATTAAGTTCCATTTACCTCACACTCTGTGCAGCTTTTCCTCAGTCCCCAGTCTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR-3UTR CAA 90 bp | GCAAGAGCTAAAATTACACTGCGGAGAGGAACCATTAGACAGAAAGATTCCCTGAATGCTCCAACAACATaGCATCGGATCTTTCATCTC | + |
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Preference number: 3 (lower is better) Translates to: ARAKITLRRGTIRQKDSLNAPTT*HRIFHL Trigger: GAGATGAAAGATCCGATGCAATGTTGTTGGAGCATT...CAGGGAATCTTTCTGTCTAATGGTTCCTCTCCGCAGTGTAATTTTAGCTCTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
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| 3UTR CCA 72 bp | GTGGTGAAGCAGCCACTTGTAGCCTCTTGGATATTTTaGGCAATCAGAGATTTCGTTTGGAAGTCTATGTTT | + |
|
Preference number: 3 (lower is better) Translates to: VVKQPLVASWIF*AIRDFVWKSMF Trigger: AAACATAGACTTCCAAACGAAATCTCTGATTGCCCAAAATATCCAAGAGGCTACAAGTGGCTGCTTCACCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| 3UTR-3UTR CAA 90 bp | AGACCTGGCATATTTGTCATATTTCCATCACAGTATCACTGTTTCAATGAATTCTTGTCCCTCCTGTACTaGTGCTTGTTCCAGACATCT | + |
|
Preference number: 3 (lower is better) Translates to: RPGIFVIFPSQYHCFNEFLSLLY*CLFQTS Trigger: AGATGTCTGGAACAAGCACAAGTACAGGAGGGACAA...GAATTCATTGAAACAGTGATACTGTGATGGAAATATGACAAATATGCCAGGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| 3UTR TCA 72 bp | AGTCTATGTTTATCTCTTTGGGAGCTTCCTTCTCTATaGAGTCGGTATAGATTTTCCTTGCTTTTGAGGACA | + |
|
Preference number: 3 (lower is better) Translates to: SLCLSLWELPSL*SRYRFSLLLRT Trigger: TGTCCTCAAAAGCAAGGAAAATCTATACCGACTTCATAGAGAAGGAAGCTCCCAAAGAGATAAACATAGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| 3UTR TCA 72 bp | ATTTCTCAGTGGGCAGGTACAACAATTGATCCACACTaGTACCTCTTTGCTAGAAAGTTCTTTTCTCTGATA | + |
|
Preference number: 3 (lower is better) Translates to: ISQWAGTTIDPH*YLFARKFFSLI Trigger: TATCAGAGAAAAGAACTTTCTAGCAAAGAGGTATCAGTGTGGATCAATTGTTGTACCTGCCCACTGAGAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| 3UTR TCA 72 bp | GTACTTGTGCTTGTTCCAGACATCTGGTTAAAGGTGTaGATTAGGGTAGTCATAAAGACTATTTCTTTTGGC | + |
|
Preference number: 3 (lower is better) Translates to: VLVLVPDIWLKV*IRVVIKTISFG Trigger: GCCAAAAGAAATAGTCTTTATGACTACCCTAATTCACACCTTTAACCAGATGTCTGGAACAAGCACAAGTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| 3UTR-3UTR CAA 90 bp | AGTTATAACTGTCAACTTTGGAGAAACTTAAATGTTAGGACAGCTGGGATGAGATCTTCTCACTTGTGCTaGAATGTGGTGTATTCAAGT | + |
|
Preference number: 3 (lower is better) Translates to: SYNCQLWRNLNVRTAGMRSSHLC*NVVYSS Trigger: ACTTGAATACACCACATTCAAGCACAAGTGAGAAGA...TCTCATCCCAGCTGTCCTAACATTTAAGTTTCTCCAAAGTTGACAGTTATAACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153527.3 |
||
| CDS-3UTR GCA 90 bp | CCAGCAGTTCATCAAATGCTTCTGCCCAGAGCTGCGCTTCCTCAGGAGAAGGCCATGGGTACGCAGTCGTaGTGGACAGCCAGGAACATG | + |
|
Preference number: 4 (lower is better) Translates to: PAVHQMLLPRAALPQEKAMGTQS*WTARNM Trigger: CATGTTCCTGGCTGTCCAGCACGACTGCGTACCCAT...GGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAACTGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| CDS-3UTR GCA 90 bp | AGAACTGACCAGGTTCTTGCCCATGCCAGGTGTCTGGAACCAAGCATACGCCAGCTTGGGGCCGTTGCCTaGACTCTTGTCCATGGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: RTDQVLAHARCLEPSIRQLGAVA*TLVHGY Trigger: GTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAG...CTGGCGTATGCTTGGTTCCAGACACCTGGCATGGGCAAGAACCTGGTCAGTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS-3UTR CCA 90 bp | CCAGCAGTTCATCAAATGCTTCTGCCCAGAGCTGCGCTTCCTCAGGAGAAGGCCCTGCACTCTTGTCCATaGGTACGCAGTCGTGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: PAVHQMLLPRAALPQEKALHSCP*VRSRAG Trigger: TCCAGCACGACTGCGTACCCATGGACAAGAGTGCAG...GGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAACTGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| 3UTR CAA 72 bp | GGCCAGCAATGCTGGTGCAGGGGATTGTGTACCAGGTaGGAACGTAAGAGGAAGTCAGCCCTGTGGGGTTAT | + |
|
Preference number: 4 (lower is better) Translates to: GQQCWCRGLCTR*ERKRKSALWGY Trigger: ATAACCCCACAGGGCTGACTTCCTCTTACGTTCCAACCTGGTACACAATCCCCTGCACCAGCATTGCTGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS-3UTR CCA 90 bp | AGCAAATGGAAGGCGGCCAGCAATGCTGGTGCAGGGGATTGTGTACCAGGTTGGTTTTCTTGCCAGTTTTaGGCTTCCCAGGAGCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SKWKAASNAGAGDCVPGWFSCQF*ASQEQR Trigger: CCTCTGCTCCTGGGAAGCCCAAAACTGGCAAGAAAA...CCAACCTGGTACACAATCCCCTGCACCAGCATTGCTGGCCGCCTTCCATTTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS-3UTR GCA 90 bp | GTTCTCCATCAAACTGTACACCCTCTTCTGAGCTGTGGTGAAGCAGCCACTTGTCTTGGGGCCGTTGCCTaGACTCTTGTCCATGGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: VLHQTVHPLLSCGEAATCLGAVA*TLVHGY Trigger: GTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAG...ACAAGTGGCTGCTTCACCACAGCTCAGAAGAGGGTGTACAGTTTGATGGAGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| CDS-3UTR CCA 90 bp | AGGACAGCTGGGATGAGAGGCGCACAGGGCTCTTCTCACTTGTGCTTGAATGTGTTTTCTTGCCAGTTTTaGGCTTCCCAGGAGCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: RTAGMRGAQGSSHLCLNVFSCQF*ASQEQR Trigger: CCTCTGCTCCTGGGAAGCCCAAAACTGGCAAGAAAA...CACATTCAAGCACAAGTGAGAAGAGCCCTGTGCGCCTCTCATCCCAGCTGTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153527.3 |
||
| 3UTR CAA 72 bp | ATTGCCCCATCACAGAAGAAAGAACTGACCAGGTTCTaGCCCATGCCAGGTGTCTGGAACCAAGCATACGCC | + |
|
Preference number: 4 (lower is better) Translates to: IAPSQKKELTRF*PMPGVWNQAYA Trigger: GGCGTATGCTTGGTTCCAGACACCTGGCATGGGCAAGAACCTGGTCAGTTCTTTCTTCTGTGATGGGGCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS-3UTR GCA 90 bp | GAAGAACACATTCAGAGGCCTGTTCCCTCCCTCTGTTCTTCACACAGTGAGGGATTCATCAAATGCTTCTaGCCAGAGCTGCGCTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: EEHIQRPVPSLCSSHSEGFIKCF*PELRFL Trigger: GAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAA...TCCCTCACTGTGTGAAGAACAGAGGGAGGGAACAGGCCTCTGAATGTGTTCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS-3UTR GCA 90 bp | AGCCCATATTTACTGGCCAGCAGTTCATCAAATGCTTCTGCCCAGAGCTGCGCTGCTGTTTGCTTTTCTTaGCAGTTTTGGGCTTCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: SPYLLASSSSNASAQSCAAVCFS*QFWASQ Trigger: CTGGGAAGCCCAAAACTGGCAAGAAAAGCAAACAGC...AGCGCAGCTCTGGGCAGAAGCATTTGATGAACTGCTGGCCAGTAAATATGGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| CDS-3UTR GCA 90 bp | CCACATTTACACGAACCTTTTCCTTTTCTTAGGCTGTTTGGCCCTGTAACTTTAGCTTCTGCCCAGAGCTaGGCTTCCTCAGGAGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: PHLHEPFPFLRLFGPVTLASAQS*ASSGEG Trigger: GCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGC...TAAAGTTACAGGGCCAAACAGCCTAAGAAAAGGAAAAGGTTCGTGTAAATGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| 3UTR CAA 72 bp | TGCTTTCATCTTAATGTTCAGGAGAGCCGTCAGCGGTaGGTAAGTGACAGGAGGCAAGATCAGGTTTGTGTG | + |
|
Preference number: 4 (lower is better) Translates to: CFHLNVQESRQR*VSDRRQDQVCV Trigger: CACACAAACCTGATCTTGCCTCCTGTCACTTACCAACCGCTGACGGCTCTCCTGAACATTAAGATGAAAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS-3UTR TCA 90 bp | CTCAGTGGGCAGGTACAACAATTGATCCACACTGATACCTCTTTGCTAGAAAGTCATGGGGCTCCGTGGTaGTCTGTGGCTTTTTACATA | + |
|
Preference number: 4 (lower is better) Translates to: LSGQVQQLIHTDTSLLESHGAPW*SVAFYI Trigger: TATGTAAAAAGCCACAGATCACCACGGAGCCCCATG...ACTTTCTAGCAAAGAGGTATCAGTGTGGATCAATTGTTGTACCTGCCCACTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS-3UTR GCA 90 bp | CCACATTTACACGAACCTTTTCCTTTTCTTAGGCTGTTTGGCCCTGTAACTTTAATGGGTACGCAGTCGTaGTGGACAGCCAGGAACATG | + |
|
Preference number: 4 (lower is better) Translates to: PHLHEPFPFLRLFGPVTLMGTQS*WTARNM Trigger: CATGTTCCTGGCTGTCCAGCACGACTGCGTACCCAT...TAAAGTTACAGGGCCAAACAGCCTAAGAAAAGGAAAAGGTTCGTGTAAATGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS-3UTR GCA 90 bp | ATCAGTTATAACTGTCAACTTTGGAGAAACTTAAATGTTAGGACAGCTGGGATGGCTTCTGCCCAGAGCTaGGCTTCCTCAGGAGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: ISYNCQLWRNLNVRTAGMASAQS*ASSGEG Trigger: GCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGC...CATCCCAGCTGTCCTAACATTTAAGTTTCTCCAAAGTTGACAGTTATAACTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153527.3 |
||
| CDS-3UTR CCA 90 bp | CACTTGCTTTCTTCTTCAGTGTTACCCAGAGTAGCACAGATTATTAGCCAAATGCTGCACTCTTGTCCATaGGTACGCAGTCGTGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: HLLSSSVLPRVAQIISQMLHSCP*VRSRAG Trigger: TCCAGCACGACTGCGTACCCATGGACAAGAGTGCAG...CATTTGGCTAATAATCTGTGCTACTCTGGGTAACACTGAAGAAGAAAGCAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| 3UTR CAA 72 bp | CTTCTGAGCTGTGGTGAAGCAGCCACTTGTAGCCTCTaGGATATTTTGGGCAATCAGAGATTTCGTTTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LLSCGEAATCSL*DILGNQRFRLE Trigger: TTCCAAACGAAATCTCTGATTGCCCAAAATATCCAAGAGGCTACAAGTGGCTGCTTCACCACAGCTCAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| CDS-3UTR CCA 90 bp | GTAGCCTCTTGGATATTTTGGGCAATCAGAGATTTCGTTTGGAAGTCTATGTTTTTTTCTTGCCAGTTTTaGGCTTCCCAGGAGCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VASWIFWAIRDFVWKSMFFSCQF*ASQEQR Trigger: CCTCTGCTCCTGGGAAGCCCAAAACTGGCAAGAAAA...AAACATAGACTTCCAAACGAAATCTCTGATTGCCCAAAATATCCAAGAGGCTAC 43% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| CDS-3UTR CCA 90 bp | CTCAGTGGGCAGGTACAACAATTGATCCACACTGATACCTCTTTGCTAGAAAGTCCACTTGTAGCCTCTTaGATATTTTGGGCAATCAGA | + |
|
Preference number: 4 (lower is better) Translates to: LSGQVQQLIHTDTSLLESPLVAS*IFWAIR Trigger: TCTGATTGCCCAAAATATCCAAGAGGCTACAAGTGG...ACTTTCTAGCAAAGAGGTATCAGTGTGGATCAATTGTTGTACCTGCCCACTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| 3UTR CAA 72 bp | TGTGGTGAAGCAGCCACTTGTAGCCTCTTGGATATTTaGGGCAATCAGAGATTTCGTTTGGAAGTCTATGTT | + |
|
Preference number: 4 (lower is better) Translates to: CGEAATCSLLDI*GNQRFRLEVYV Trigger: AACATAGACTTCCAAACGAAATCTCTGATTGCCCAAAATATCCAAGAGGCTACAAGTGGCTGCTTCACCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| CDS-3UTR GCA 90 bp | CTTGTGATCAGTTATAACTGTCAACTTTGGAGAAACTTAAATGTTAGGACAGCTTTCATCAAATGCTTCTaGCCAGAGCTGCGCTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: LVISYNCQLWRNLNVRTAFIKCF*PELRFL Trigger: GAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAA...AGCTGTCCTAACATTTAAGTTTCTCCAAAGTTGACAGTTATAACTGATCACAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153527.3 |
||
| 3UTR CAA 72 bp | AGCCTCTTGGATATTTTGGGCAATCAGAGATTTCGTTaGGAAGTCTATGTTTATCTCTTTGGGAGCTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: SLLDILGNQRFR*EVYVYLFGSFL Trigger: AAGGAAGCTCCCAAAGAGATAAACATAGACTTCCAAACGAAATCTCTGATTGCCCAAAATATCCAAGAGGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027606.4 |
||
| 3UTR CAA 72 bp | TTGGTAAGTGACAGGAGGCAAGATCAGGTTTGTGTGTaGAAAGCATCACTAGCGTTAAGAAGGAACTATATA | + |
|
Preference number: 4 (lower is better) Translates to: LVSDRRQDQVCV*KASLALRRNYI Trigger: TATATAGTTCCTTCTTAACGCTAGTGATGCTTTCAACACACAAACCTGATCTTGCCTCCTGTCACTTACCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| 3UTR CAA 72 bp | TCCTCCCATTTACTAAAACTTCCAGATATAGAAAATTaGCTTCAGAAAGGGAATTCCTCCAAATTAGCCAGA | + |
|
Preference number: 4 (lower is better) Translates to: SSHLLKLPDIEN*LQKGNSSKLAR Trigger: TCTGGCTAATTTGGAGGAATTCCCTTTCTGAAGCAAATTTTCTATATCTGGAAGTTTTAGTAAATGGGAGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS GCA 90 bp | CCGCTTCATTTTCTCCCGCTTCTCCTCGACCTTGGGGCCGTTGCCTaGACTCTTGTCCATGGGTACGCAGTCGTGCTGGACAGCCAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: PLHFLPLLLDLGAVA*TLVHGYAVVLDSQE Trigger: TTCCTGGCTGTCCAGCACGACTGCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCGGGAGAAAATGAAGCGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS GCA 90 bp | GTGTCCGCTTCATTTTCTCCCGCTTCTCCTCGACCTTGGGGCCGTTaGCTGCACTCTTGTCCATGGGTACGCAGTCGTGCTGGACAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: VSASFSPASPRPWGR*LHSCPWVRSRAGQP Trigger: TGGCTGTCCAGCACGACTGCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCGGGAGAAAATGAAGCGGACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS CCA 90 bp | CCTTTAAGAGTGTCCGCTTCATTTTCTCCCGCTTCTCCTCGACCTTaGGGCCGTTGCCTGCACTCTTGTCCATGGGTACGCAGTCGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: PLRVSASFSPASPRP*GRCLHSCPWVRSRA Trigger: AGCACGACTGCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCGGGAGAAAATGAAGCGGACACTCTTAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS GCA 90 bp | CCTGAATGCAGCCAGCCCATATTTACTGGCCAGCAGTTCATCAAATaGTTCTGCCCAGAGCTGCGCTTCCTCAGGAGAAGGCTTGATAAA | + |
|
Preference number: 5 (lower is better) Translates to: PECSQPIFTGQQFIK*FCPELRFLRRRLDK Trigger: TTTATCAAGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAACTGCTGGCCAGTAAATATGGGCTGGCTGCATTCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127206.8 ENSMUST00000153527.3 |
||
| CDS GCA 90 bp | TGCAGCCAGCCCATATTTACTGGCCAGCAGTTCATCAAATGCTTCTaGCCAGAGCTGCGCTTCCTCAGGAGAAGGCTTGATAAAAGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: CSQPIFTGQQFIKCF*PELRFLRRRLDKSL Trigger: CAAACTTTTATCAAGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAACTGCTGGCCAGTAAATATGGGCTGGCTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000127206.8 ENSMUST00000153527.3 |
||
| CDS-3UTR CAA 90 bp | AGCTGGGATGAGAGGCGCACAGGGCTCTTCTCACTTGTGCTTGAATGTGGTGTATCCTCAGGAGAAGGCTaGATAAAAGTTTGCTGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: SWDERRTGLFSLVLECGVSSGEG*IKVCCL Trigger: CAAACAGCAAACTTTTATCAAGCCTTCTCCTGAGGA...TACACCACATTCAAGCACAAGTGAGAAGAGCCCTGTGCGCCTCTCATCCCAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153527.3 |
||
| CDS-3UTR CAA 90 bp | GCAAGAGCTAAAATTACACTGCGGAGAGGAACCATTAGACAGAAAGATTCCCTGTCCTCAGGAGAAGGCTaGATAAAAGTTTGCTGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: ARAKITLRRGTIRQKDSLSSGEG*IKVCCL Trigger: CAAACAGCAAACTTTTATCAAGCCTTCTCCTGAGGA...CAGGGAATCTTTCTGTCTAATGGTTCCTCTCCGCAGTGTAATTTTAGCTCTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS-3UTR CAA 90 bp | CCACATTTACACGAACCTTTTCCTTTTCTTAGGCTGTTTGGCCCTGTAACTTTAGCCACTTGTAGCCTCTaGGATATTTTGGGCAATCAG | + |
|
Preference number: 5 (lower is better) Translates to: PHLHEPFPFLRLFGPVTLATCSL*DILGNQ Trigger: CTGATTGCCCAAAATATCCAAGAGGCTACAAGTGGC...TAAAGTTACAGGGCCAAACAGCCTAAGAAAAGGAAAAGGTTCGTGTAAATGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127206.8 |
||
| CDS CAA 72 bp | CGCTTCTCCTCGACCTTGGGGCCGTTGCCTGCACTCTaGTCCATGGGTACGCAGTCGTGCTGGACAGCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RFSSTLGPLPAL*SMGTQSCWTAR Trigger: CCTGGCTGTCCAGCACGACTGCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS GCA 72 bp | TTTCTCCCGCTTCTCCTCGACCTTGGGGCCGTTGCCTaGACTCTTGTCCATGGGTACGCAGTCGTGCTGGAC | + |
|
Preference number: 6 (lower is better) Translates to: FLPLLLDLGAVA*TLVHGYAVVLD Trigger: GTCCAGCACGACTGCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCGGGAGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS CAA 90 bp | AGTGTCCGCTTCATTTTCTCCCGCTTCTCCTCGACCTTGGGGCCGTaGCCTGCACTCTTGTCCATGGGTACGCAGTCGTGCTGGACAGCC | + |
|
Preference number: 6 (lower is better) Translates to: SVRFIFSRFSSTLGP*PALLSMGTQSCWTA Trigger: GGCTGTCCAGCACGACTGCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCGGGAGAAAATGAAGCGGACACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS CCA 72 bp | GTGTCCGCTTCATTTTCTCCCGCTTCTCCTCGACCTTaGGGCCGTTGCCTGCACTCTTGTCCATGGGTACGC | + |
|
Preference number: 6 (lower is better) Translates to: VSASFSPASPRP*GRCLHSCPWVR Trigger: GCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCGGGAGAAAATGAAGCGGACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS CAA 90 bp | ATTTTCTCCCGCTTCTCCTCGACCTTGGGGCCGTTGCCTGCACTCTaGTCCATGGGTACGCAGTCGTGCTGGACAGCCAGGAACATGGCA | + |
|
Preference number: 6 (lower is better) Translates to: IFSRFSSTLGPLPAL*SMGTQSCWTARNMA Trigger: TGCCATGTTCCTGGCTGTCCAGCACGACTGCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCGGGAGAAAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS GCA 72 bp | TCATTTTCTCCCGCTTCTCCTCGACCTTGGGGCCGTTaGCTGCACTCTTGTCCATGGGTACGCAGTCGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: SFSPASPRPWGR*LHSCPWVRSRA Trigger: AGCACGACTGCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCGGGAGAAAATGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS CAA 72 bp | TTCATTTTCTCCCGCTTCTCCTCGACCTTGGGGCCGTaGCCTGCACTCTTGTCCATGGGTACGCAGTCGTGC | + |
|
Preference number: 6 (lower is better) Translates to: FIFSRFSSTLGP*PALLSMGTQSC Trigger: GCACGACTGCGTACCCATGGACAAGAGTGCAGGCAACGGCCCCAAGGTCGAGGAGAAGCGGGAGAAAATGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027606.4 ENSMUST00000127206.8 |
||
| CDS GCA 72 bp | CCCATATTTACTGGCCAGCAGTTCATCAAATGCTTCTaGCCAGAGCTGCGCTTCCTCAGGAGAAGGCTTGAT | + |
|
Preference number: 6 (lower is better) Translates to: PIFTGQQFIKCF*PELRFLRRRLD Trigger: ATCAAGCCTTCTCCTGAGGAAGCGCAGCTCTGGGCAGAAGCATTTGATGAACTGCTGGCCAGTAAATATGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000127206.8 ENSMUST00000153527.3 |
||
| CDS TCA 72 bp | CCTGTCTTCTTACCTCTTTGGGAGCTTCCTTCTCTATaGAGTCGGTATAGATTTTCCTTGCTTTTGAGGACA | + |
|
Preference number: 6 (lower is better) Translates to: PVFLPLWELPSL*SRYRFSLLLRT Trigger: TGTCCTCAAAAGCAAGGAAAATCTATACCGACTTCATAGAGAAGGAAGCTCCCAAAGAGGTAAGAAGACAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153527.3 |
||