Pregenerated sensors for RGS16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026475Ensembl transcript IDs: ENSMUST00000027748.8
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTCTTGCACTTGCTGCACAGGATCTGCCTCCCACACAGGGCAGCTaGTTTAGGGACGGGCGACTCCACCTCTCTTCCCGATGGCTTCTA | + |
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Preference number: 1 (lower is better) Translates to: PLALAAQDLPPTQGS*FRDGRLHLSSRWLL Trigger: TAGAAGCCATCGGGAAGAGAGGTGGAGTCGCCCGTCCCTAAAGCAGCTGCCCTGTGTGGGAGGCAGATCCTGTGCAGCAAGTGCAAGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 90 bp | TCAAGCTGCGGGGATGGATGTCCGTCTGTCCTTCCACTATCCTCTTaGACTTGCTGCACAGGATCTGCCTCCCACACAGGGCAGCTGCTT | + |
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Preference number: 1 (lower is better) Translates to: SSCGDGCPSVLPLSS*TCCTGSASHTGQLL Trigger: AAGCAGCTGCCCTGTGTGGGAGGCAGATCCTGTGCAGCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCCGCAGCTTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 90 bp | GCCCACCACAGTATCTGGAGGAGAGGGGGTTCTTCGCACTCAAGCTaGGGGGATGGATGTCCGTCTGTCCTTCCACTATCCTCTTGCACT | + |
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Preference number: 1 (lower is better) Translates to: AHHSIWRRGGSSHSS*GDGCPSVLPLSSCT Trigger: AGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCCGCAGCTTGAGTGCGAAGAACCCCCTCTCCTCCAGATACTGTGGTGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CCA 90 bp | CACAGGAATATTAAGAAGCCTCAGCTCGGGGGCCCTGGGTGTCCCTaGGAAGGCAAGGGGCAGGAAATGAAGGTTCCACACACACAGCCT | + |
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Preference number: 1 (lower is better) Translates to: HRNIKKPQLGGPGCP*EGKGQEMKVPHTQP Trigger: AGGCTGTGTGTGTGGAACCTTCATTTCCTGCCCCTTGCCTTCCCAGGGACACCCAGGGCCCCCGAGCTGAGGCTTCTTAATATTCCTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CCA 90 bp | CAGTATCTGGAGGAGAGGGGGTTCTTCGCACTCAAGCTGCGGGGATaGATGTCCGTCTGTCCTTCCACTATCCTCTTGCACTTGCTGCAC | + |
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Preference number: 1 (lower is better) Translates to: QYLEERGFFALKLRG*MSVCPSTILLHLLH Trigger: GTGCAGCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCCGCAGCTTGAGTGCGAAGAACCCCCTCTCCTCCAGATACTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CCA 90 bp | CAGCCCTCAGTCACAGGTCCTGGAAATGAGGAGTCTCTCCTACACTaGCCCACCACAGTATCTGGAGGAGAGGGGGTTCTTCGCACTCAA | + |
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Preference number: 1 (lower is better) Translates to: QPSVTGPGNEESLLH*PTTVSGGEGVLRTQ Trigger: TTGAGTGCGAAGAACCCCCTCTCCTCCAGATACTGTGGTGGGCCAGTGTAGGAGAGACTCCTCATTTCCAGGACCTGTGACTGAGGGCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CCA 90 bp | AGTCCAGGAGTGAGGAAATCAAGACGGGGACCAAAGCCGACTGTCTaGCCCTTAAATAACTGCTCTCTGGCTCCTGTTCTCATGGTTCCC | + |
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Preference number: 1 (lower is better) Translates to: SPGVRKSRRGPKPTV*PLNNCSLAPVLMVP Trigger: GGGAACCATGAGAACAGGAGCCAGAGAGCAGTTATTTAAGGGCCAGACAGTCGGCTTTGGTCCCCGTCTTGATTTCCTCACTCCTGGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR CCA 90 bp | GGAGGCGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAATCAGCTCGGGGGCCCTaGGTGTCCCTGGGAAGGCAA | + |
|
Preference number: 2 (lower is better) Translates to: GGVIRQQLQLRLFSTGKQSARGP*VSLGRQ Trigger: TTGCCTTCCCAGGGACACCCAGGGCCCCCGAGCTGA...TTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACGCCTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR GCA 90 bp | GCCCTGTTCACAAGCAGACCCTGCTGCAAAGGTGAAGGCAGGGGGCCACCTACATTGCTGCACAGGATCTaGCTCCCACACAGGGCAGCT | + |
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Preference number: 2 (lower is better) Translates to: ALFTSRPCCKGEGRGPPTLLHRI*LPHRAA Trigger: AGCTGCCCTGTGTGGGAGGCAGATCCTGTGCAGCAA...TGTAGGTGGCCCCCTGCCTTCACCTTTGCAGCAGGGTCTGCTTGTGAACAGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CAA 90 bp | CTGCGGGGATGGATGTCCGTCTGTCCTTCCACTATCCTCTTGCACTaGCTGCACAGGATCTGCCTCCCACACAGGGCAGCTGCTTTAGGG | + |
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Preference number: 2 (lower is better) Translates to: LRGWMSVCPSTILLH*LHRICLPHRAAALG Trigger: CCCTAAAGCAGCTGCCCTGTGTGGGAGGCAGATCCTGTGCAGCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCCGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CAA 90 bp | CTCAAGCTGCGGGGATGGATGTCCGTCTGTCCTTCCACTATCCTCTaGCACTTGCTGCACAGGATCTGCCTCCCACACAGGGCAGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: LKLRGWMSVCPSTIL*HLLHRICLPHRAAA Trigger: AGCAGCTGCCCTGTGTGGGAGGCAGATCCTGTGCAGCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCCGCAGCTTGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR TCA 90 bp | CGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAAACCACGGCCCAGTCCAGGAGTaGGGAAATCAAGACGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: RDQAAAPAEALQYRQTNHGPVQE*GNQDGD Trigger: GTCCCCGTCTTGATTTCCTCACTCCTGGACTGGGCC...GTGGTTTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR CCA 90 bp | GGAATATTAAGAAGCCTCAGCTCGGGGGCCCTGGGTGTCCCTGGGAAGGCAAGGGAGTCTCTCCTACACTaGCCCACCACAGTATCTGGA | + |
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Preference number: 2 (lower is better) Translates to: GILRSLSSGALGVPGKARESLLH*PTTVSG Trigger: TCCAGATACTGTGGTGGGCCAGTGTAGGAGAGACTC...CCTTGCCTTCCCAGGGACACCCAGGGCCCCCGAGCTGAGGCTTCTTAATATTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR TCA 90 bp | ACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTAACTACAGTCTCACCTGCTGGACATaGGTGCTGGCCCCTGTGCCG | + |
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Preference number: 2 (lower is better) Translates to: TSVPELSWSLTGFSPNYSLTCWT*VLAPVP Trigger: CGGCACAGGGGCCAGCACTCATGTCCAGCAGGTGAG...ACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR CCA 90 bp | TCTCTGGCTCCTGTTCTCATGGTTCCCAACCACCCAGCATCCCTTTGTGTGTGCGCCCACCACAGTATCTaGAGGAGAGGGGGTTCTTCG | + |
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Preference number: 2 (lower is better) Translates to: SLAPVLMVPNHPASLCVCAHHSI*RRGGSS Trigger: CGAAGAACCCCCTCTCCTCCAGATACTGTGGTGGGC...GCACACACAAAGGGATGCTGGGTGGTTGGGAACCATGAGAACAGGAGCCAGAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR GCA 90 bp | TCTCTGGCTCCTGTTCTCATGGTTCCCAACCACCCAGCATCCCTTTGTGTGTGCTCTTCGCACTCAAGCTaGGGGGATGGATGTCCGTCT | + |
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Preference number: 2 (lower is better) Translates to: SLAPVLMVPNHPASLCVCSSHSS*GDGCPS Trigger: AGACGGACATCCATCCCCGCAGCTTGAGTGCGAAGA...GCACACACAAAGGGATGCTGGGTGGTTGGGAACCATGAGAACAGGAGCCAGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR GCA 90 bp | GGAGGCGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAATTCACAAGCAGACCCTaGTGCAAAGGTGAAGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: GGVIRQQLQLRLFSTGKQFTSRP*CKGEGR Trigger: CCTGCCTTCACCTTTGCAGCAGGGTCTGCTTGTGAA...TTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACGCCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR TCA 90 bp | CGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAAACCACAGCTTTCTTGGTCCTTaGCGGGCTTCTCCCCTAACT | + |
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Preference number: 2 (lower is better) Translates to: RDQAAAPAEALQYRQTNHSFLGP*RASPLT Trigger: AGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCT...GTGGTTTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR GCA 90 bp | GCTGAGCTAACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTTCCTCTTGCACTTGCTaGACAGGATCTGCCTCCCAC | + |
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Preference number: 2 (lower is better) Translates to: AELTSVPELSWSLTGFSPSSCTC*TGSASH Trigger: GTGGGAGGCAGATCCTGTGCAGCAAGTGCAAGAGGA...AGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGTTAGCTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR GCA 90 bp | CAGCCTTGTCGTCAGCCCTCAGTCACAGGTCCTGGAAATGAGGAGTCTCTCCTACTATCCTCTTGCACTTaGTGCACAGGATCTGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: QPCRQPSVTGPGNEESLLLSSCT*CTGSAS Trigger: GGAGGCAGATCCTGTGCAGCAAGTGCAAGAGGATAG...TAGGAGAGACTCCTCATTTCCAGGACCTGTGACTGAGGGCTGACGACAAGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTAACTACAGTCTCAAGCTGCGGGGATaGATGTCCGTCTGTCCTTCC | + |
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Preference number: 2 (lower is better) Translates to: TSVPELSWSLTGFSPNYSLKLRG*MSVCPS Trigger: GGAAGGACAGACGGACATCCATCCCCGCAGCTTGAG...ACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR TCA 90 bp | ACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTAACTACAGTGCAAGGGGCAGGAAATaGAGGTTCCACACACACAGC | + |
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Preference number: 2 (lower is better) Translates to: TSVPELSWSLTGFSPNYSARGRK*RFHTHS Trigger: GCTGTGTGTGTGGAACCTTCATTTCCTGCCCCTTGC...ACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR TCA 90 bp | CGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAAACCACCAAAGAGAACTGGTTTaGCTTCAGCTAGTCTTTTGG | + |
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Preference number: 2 (lower is better) Translates to: RDQAAAPAEALQYRQTNHQRELV*LQLVFW Trigger: CCAAAAGACTAGCTGAAGTCAAACCAGTTCTCTTTG...GTGGTTTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CAA 90 bp | GCAGGATTCATCATTGACCCGGAAAGGGGCTCACAGGCCGGTTTTTaGAGGTATAGAAATCTCATCTGGGCCAAGAATCAGACAGACTCA | + |
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Preference number: 2 (lower is better) Translates to: AGFIIDPERGSQAGF*RYRNLIWAKNQTDS Trigger: TGAGTCTGTCTGATTCTTGGCCCAGATGAGATTTCTATACCTCAAAAAACCGGCCTGTGAGCCCCTTTCCGGGTCAATGATGAATCCTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 72 bp | CTTGCTGCACAGGATCTGCCTCCCACACAGGGCAGCTaGTTTAGGGACGGGCGACTCCACCTCTCTTCCCGA | + |
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Preference number: 3 (lower is better) Translates to: LAAQDLPPTQGS*FRDGRLHLSSR Trigger: TCGGGAAGAGAGGTGGAGTCGCCCGTCCCTAAAGCAGCTGCCCTGTGTGGGAGGCAGATCCTGTGCAGCAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR CAA 90 bp | GAGCACCCGGCGCAGCCTTGTCGTCAGCCCTCAGTCACAGGTCCTGGAAATGAGACTATCCTCTTGCACTaGCTGCACAGGATCTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: EHPAQPCRQPSVTGPGNETILLH*LHRICL Trigger: GAGGCAGATCCTGTGCAGCAAGTGCAAGAGGATAGT...CTCATTTCCAGGACCTGTGACTGAGGGCTGACGACAAGGCTGCGCCGGGTGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 72 bp | GGATGTCCGTCTGTCCTTCCACTATCCTCTTGCACTTaGTGCACAGGATCTGCCTCCCACACAGGGCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: GCPSVLPLSSCT*CTGSASHTGQL Trigger: CAGCTGCCCTGTGTGGGAGGCAGATCCTGTGCAGCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 72 bp | GGGGATGGATGTCCGTCTGTCCTTCCACTATCCTCTTaGACTTGCTGCACAGGATCTGCCTCCCACACAGGG | + |
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Preference number: 3 (lower is better) Translates to: GDGCPSVLPLSS*TCCTGSASHTG Trigger: CCCTGTGTGGGAGGCAGATCCTGTGCAGCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CCA 72 bp | GAGGAGAGGGGGTTCTTCGCACTCAAGCTGCGGGGATaGATGTCCGTCTGTCCTTCCACTATCCTCTTGCAC | + |
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Preference number: 3 (lower is better) Translates to: EERGFFALKLRG*MSVCPSTILLH Trigger: GTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCCGCAGCTTGAGTGCGAAGAACCCCCTCTCCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CCA 72 bp | TGTTCGGTAAGACTCAGAAGTGATAGGCAGGCAAGTTaGTTTCCCCCGGCCCCATCCTTCCAGGCAGCCCTC | + |
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Preference number: 3 (lower is better) Translates to: CSVRLRSDRQAS*FPPAPSFQAAL Trigger: GAGGGCTGCCTGGAAGGATGGGGCCGGGGGAAACCAACTTGCCTGCCTATCACTTCTGAGTCTTACCGAACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR TCA 72 bp | GCCTTGTCGTCAGCCCTCAGTCACAGGTCCTGGAAATaGGGAGTCTCTCCTACACTGGCCCACCACAGTATC | + |
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Preference number: 3 (lower is better) Translates to: ALSSALSHRSWK*GVSPTLAHHSI Trigger: GATACTGTGGTGGGCCAGTGTAGGAGAGACTCCTCATTTCCAGGACCTGTGACTGAGGGCTGACGACAAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 72 bp | AGTATCTGGAGGAGAGGGGGTTCTTCGCACTCAAGCTaGGGGGATGGATGTCCGTCTGTCCTTCCACTATCC | + |
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Preference number: 3 (lower is better) Translates to: SIWRRGGSSHSS*GDGCPSVLPLS Trigger: GGATAGTGGAAGGACAGACGGACATCCATCCCCGCAGCTTGAGTGCGAAGAACCCCCTCTCCTCCAGATACT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 72 bp | ACTTCTCAGTTAGCCCTGTTCACAAGCAGACCCTGCTaGAAAGGTGAAGGCAGGGGGCCACCTACAAGACGG | + |
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Preference number: 3 (lower is better) Translates to: TSQLALFTSRPC*KGEGRGPPTRR Trigger: CCGTCTTGTAGGTGGCCCCCTGCCTTCACCTTTGCAGCAGGGTCTGCTTGTGAACAGGGCTAACTGAGAAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR CAA 90 bp | GGAGGCGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAACCTTCCACTATCCTCTaGCACTTGCTGCACAGGATC | + |
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Preference number: 3 (lower is better) Translates to: GGVIRQQLQLRLFSTGKQPSTIL*HLLHRI Trigger: GATCCTGTGCAGCAAGTGCAAGAGGATAGTGGAAGG...TTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACGCCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR TCA 72 bp | CCACACACACAGCCTTTTCTAGGCCCAGTCCAGGAGTaGGGAAATCAAGACGGGGACCAAAGCCGACTGTCT | + |
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Preference number: 3 (lower is better) Translates to: PHTQPFLGPVQE*GNQDGDQSRLS Trigger: AGACAGTCGGCTTTGGTCCCCGTCTTGATTTCCTCACTCCTGGACTGGGCCTAGAAAAGGCTGTGTGTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 72 bp | CGGGGACCAAAGCCGACTGTCTGGCCCTTAAATAACTaGTCTCTGGCTCCTGTTCTCATGGTTCCCAACCAC | + |
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Preference number: 3 (lower is better) Translates to: RGPKPTVWPLNN*SLAPVLMVPNH Trigger: GTGGTTGGGAACCATGAGAACAGGAGCCAGAGAGCAGTTATTTAAGGGCCAGACAGTCGGCTTTGGTCCCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 72 bp | AAGACTTCTCAGTTAGCCCTGTTCACAAGCAGACCCTaGTGCAAAGGTGAAGGCAGGGGGCCACCTACAAGA | + |
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Preference number: 3 (lower is better) Translates to: KTSQLALFTSRP*CKGEGRGPPTR Trigger: TCTTGTAGGTGGCCCCCTGCCTTCACCTTTGCAGCAGGGTCTGCTTGTGAACAGGGCTAACTGAGAAGTCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CCA 72 bp | CCCTTGGCTGAGCTAACTTCTGTTCCAGAGCTTTCTTaGTCCTTGACGGGCTTCTCCCCTAACTACAGTGGG | + |
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Preference number: 3 (lower is better) Translates to: PLAELTSVPELS*SLTGFSPNYSG Trigger: CCCACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGTTAGCTCAGCCAAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CCA 72 bp | GTGAGGAAATCAAGACGGGGACCAAAGCCGACTGTCTaGCCCTTAAATAACTGCTCTCTGGCTCCTGTTCTC | + |
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Preference number: 3 (lower is better) Translates to: VRKSRRGPKPTV*PLNNCSLAPVL Trigger: GAGAACAGGAGCCAGAGAGCAGTTATTTAAGGGCCAGACAGTCGGCTTTGGTCCCCGTCTTGATTTCCTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR-3UTR CAA 90 bp | GGAGGCGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAAGCAGAATGGCTTCTTTaGCAGGATTCATCATTGACC | + |
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Preference number: 3 (lower is better) Translates to: GGVIRQQLQLRLFSTGKQAEWLL*QDSSLT Trigger: GGTCAATGATGAATCCTGCAAAAGAAGCCATTCTGC...TTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACGCCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR TCA 72 bp | AAGACGGCCATGGAGAGCACCCAGCTTAGGGTCCCATaGGCAGAATGGCTTCTTTTGCAGGATTCATCATTG | + |
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Preference number: 3 (lower is better) Translates to: KTAMESTQLRVP*AEWLLLQDSSL Trigger: CAATGATGAATCCTGCAAAAGAAGCCATTCTGCTCATGGGACCCTAAGCTGGGTGCTCTCCATGGCCGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR GCA 72 bp | CTCATGGTTCCCAACCACCCAGCATCCCTTTGTGTGTaGCCTGGTAAAAAGTATAAGTTCTGGGCCACCCTT | + |
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Preference number: 3 (lower is better) Translates to: LMVPNHPASLCV*PGKKYKFWATL Trigger: AAGGGTGGCCCAGAACTTATACTTTTTACCAGGGCACACACAAAGGGATGCTGGGTGGTTGGGAACCATGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CCA 72 bp | TCTCCGTCTCGGTGGCTGGTGCTGGAAGTCCCAACTTaGAAAGTTTGTTCGGTAAGACTCAGAAGTGATAGG | + |
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Preference number: 3 (lower is better) Translates to: SPSRWLVLEVPT*KVCSVRLRSDR Trigger: CCTATCACTTCTGAGTCTTACCGAACAAACTTTCCAAGTTGGGACTTCCAGCACCAGCCACCGAGACGGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR TCA 72 bp | CAGCTAGTCTTTTGGGCTCCTAGATGGATTTTTCAATaGCTTCTCTCCCTTAGCTCACCTGCTGGACATGAG | + |
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Preference number: 3 (lower is better) Translates to: QLVFWAPRWIFQ*LLSLSSPAGHE Trigger: CTCATGTCCAGCAGGTGAGCTAAGGGAGAGAAGTCATTGAAAAATCCATCTAGGAGCCCAAAAGACTAGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR GCA 90 bp | GAGCACCCGGCGCAGCCTTGTCGTCAGCCCTCAGTCACAGGTCCTGGAAATGAGTGGGCTGCCGCTGGGTaGAGAGGTGGAAGTGGCCGA | + |
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Preference number: 4 (lower is better) Translates to: EHPAQPCRQPSVTGPGNEWAAAG*RGGSGR Trigger: TCGGCCACTTCCACCTCTGCACCCAGCGGCAGCCCA...CTCATTTCCAGGACCTGTGACTGAGGGCTGACGACAAGGCTGCGCCGGGTGCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR TCA 90 bp | CCCAGAGCACCCGGCGCAGCCTTGTCGTCAGCCCTCAGTCACAGGTCCTGGAAATCGTCAAAGATGTGGTaGGCCCTGGACGCCAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: PRAPGAALSSALSHRSWKSSKMW*ALDASL Trigger: CAAACTGGCGTCCAGGGCTCACCACATCTTTGACGA...TTTCCAGGACCTGTGACTGAGGGCTGACGACAAGGCTGCGCCGGGTGCTCTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR GCA 90 bp | CCCACACAGGGCAGCTGCTTTAGGGACGGGCGACTCCACCTCTCTTCCCGATGGCCTTCTCCATCAATGTaGGGGTCTTCCCCTGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: PTQGSCFRDGRLHLSSRWPSPSM*GSSPEP Trigger: TGGCTCAGGGGAAGACCCGCACATTGATGGAGAAGG...CCATCGGGAAGAGAGGTGGAGTCGCCCGTCCCTAAAGCAGCTGCCCTGTGTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CCA 90 bp | CGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAAACCACCGCTGGGTGCAGAGGTaGAAGTGGCCGAGGCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: RDQAAAPAEALQYRQTNHRWVQR*KWPRLG Trigger: CCCAAGCCTCGGCCACTTCCACCTCTGCACCCAGCG...GTGGTTTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR TCA 90 bp | GCCCTGTTCACAAGCAGACCCTGCTGCAAAGGTGAAGGCAGGGGGCCACCTACACGCCAGTTTGGTGGCTaGTCGGATCTTCTTGAACTC | + |
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Preference number: 4 (lower is better) Translates to: ALFTSRPCCKGEGRGPPTRQFGG*SDLLEL Trigger: GAGTTCAAGAAGATCCGATCAGCCACCAAACTGGCG...TGTAGGTGGCCCCCTGCCTTCACCTTTGCAGCAGGGTCTGCTTGTGAACAGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CAA 72 bp | CGGGGATGGATGTCCGTCTGTCCTTCCACTATCCTCTaGCACTTGCTGCACAGGATCTGCCTCCCACACAGG | + |
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Preference number: 4 (lower is better) Translates to: RGWMSVCPSTIL*HLLHRICLPHR Trigger: CCTGTGTGGGAGGCAGATCCTGTGCAGCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CCA 90 bp | ACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTAACTACAGTCAGCTGGGCTGCCGCTaGGTGCAGAGGTGGAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: TSVPELSWSLTGFSPNYSQLGCR*VQRWKW Trigger: CCACTTCCACCTCTGCACCCAGCGGCAGCCCAGCTG...ACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CAA 72 bp | TGGATGTCCGTCTGTCCTTCCACTATCCTCTTGCACTaGCTGCACAGGATCTGCCTCCCACACAGGGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: WMSVCPSTILLH*LHRICLPHRAA Trigger: AGCTGCCCTGTGTGGGAGGCAGATCCTGTGCAGCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR TCA 90 bp | CAGCCTTGTCGTCAGCCCTCAGTCACAGGTCCTGGAAATGAGGAGTCTCTCCTACTGATCGGATCTTCTTaGACTCCTCGCAGGCCAACC | + |
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Preference number: 4 (lower is better) Translates to: QPCRQPSVTGPGNEESLLLIGSS*TPRRPT Trigger: GGTTGGCCTGCGAGGAGTTCAAGAAGATCCGATCAG...TAGGAGAGACTCCTCATTTCCAGGACCTGTGACTGAGGGCTGACGACAAGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR TCA 90 bp | GAGCACCCGGCGCAGCCTTGTCGTCAGCCCTCAGTCACAGGTCCTGGAAATGAGAGTTCTCGGGTCTCGTaGTCTATGTTCACCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: EHPAQPCRQPSVTGPGNESSRVS*SMFTSL Trigger: TAAAGAGGTGAACATAGATCACGAGACCCGAGAACT...CTCATTTCCAGGACCTGTGACTGAGGGCTGACGACAAGGCTGCGCCGGGTGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CCA 90 bp | ACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTAACTACAGTGTGCAGAGGTGGAAGTaGCCGAGGCTTGGGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: TSVPELSWSLTGFSPNYSVQRWK*PRLGQP Trigger: TGGCTGCCCAAGCCTCGGCCACTTCCACCTCTGCAC...ACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CCA 90 bp | ACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTAACTACAGTTCTCCAGGCAGGTGTTaGGGAAGGTGGCTAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: TSVPELSWSLTGFSPNYSSPGRC*GRWLGC Trigger: GCACCCTAGCCACCTTCCCCAACACCTGCCTGGAGA...ACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CCA 90 bp | GCTGAGCTAACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTCCCTGGACGCCAGTTTaGTGGCTGATCGGATCTTCT | + |
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Preference number: 4 (lower is better) Translates to: AELTSVPELSWSLTGFSPPWTPV*WLIGSS Trigger: AGAAGATCCGATCAGCCACCAAACTGGCGTCCAGGG...AGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGTTAGCTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR TCA 90 bp | GGAATATTAAGAAGCCTCAGCTCGGGGGCCCTGGGTGTCCCTGGGAAGGCAAGGTCCCAGTACATCTTCTaGGAAGCTTCTCTCTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: GILRSLSSGALGVPGKARSQYIF*EASLFV Trigger: AACAAAGAGAGAAGCTTCTCAGAAGATGTACTGGGA...CCTTGCCTTCCCAGGGACACCCAGGGCCCCCGAGCTGAGGCTTCTTAATATTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR TCA 90 bp | ACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTAACTACAGTTTCCCAGCCGCGTCTTaGACTCTTTGGCTCTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TSVPELSWSLTGFSPNYSFPAAS*TLWLSP Trigger: TGGAGAGAGCCAAAGAGTTCAAGACGCGGCTGGGAA...ACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR TCA 90 bp | TGGTCCTTGACGGGCTTCTCCCCTAACTACAGTGGGCATCTCATGTCAACAGGACTCAGCTCTGATTTATaGAGAAAGATTCCCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: WSLTGFSPNYSGHLMSTGLSSDL*RKIPSR Trigger: GCGGCTGGGAATCTTTCTTCATAAATCAGAGCTGAG...TCCTGTTGACATGAGATGCCCACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR GCA 90 bp | GCTGCGGGGATGGATGTCCGTCTGTCCTTCCACTATCCTCTTGCACTTGCTGCACTTCTCTCTTTGTTATaGTTACTGGCCCACTCGAAT | + |
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Preference number: 4 (lower is better) Translates to: AAGMDVRLSFHYPLALAALLSLL*LLAHSN Trigger: ATTCGAGTGGGCCAGTAAGCATAACAAAGAGAGAAG...TGCAGCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCCGCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR TCA 90 bp | TCTCTGGCTCCTGTTCTCATGGTTCCCAACCACCCAGCATCCCTTTGTGTGTGCATCGGAGCTCAGCTCTaGTTTATGAAGAAAGATTCC | + |
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Preference number: 4 (lower is better) Translates to: SLAPVLMVPNHPASLCVCIGAQL*FMKKDS Trigger: GGAATCTTTCTTCATAAATCAGAGCTGAGCTCCGAT...GCACACACAAAGGGATGCTGGGTGGTTGGGAACCATGAGAACAGGAGCCAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| 3UTR CAA 72 bp | ATCATTGACCCGGAAAGGGGCTCACAGGCCGGTTTTTaGAGGTATAGAAATCTCATCTGGGCCAAGAATCAG | + |
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Preference number: 4 (lower is better) Translates to: IIDPERGSQAGF*RYRNLIWAKNQ Trigger: CTGATTCTTGGCCCAGATGAGATTTCTATACCTCAAAAAACCGGCCTGTGAGCCCCTTTCCGGGTCAATGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CAA 90 bp | TCAAGCTGCGGGGATGGATGTCCGTCTGTCCTTCCACTATCCTCTTGCACTTGCCGCGTCTTGAACTCTTaGGCTCTCTCCAGGCAGGTG | + |
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Preference number: 5 (lower is better) Translates to: SSCGDGCPSVLPLSSCTCRVLNS*ALSRQV Trigger: CACCTGCCTGGAGAGAGCCAAAGAGTTCAAGACGCG...GCAAGTGCAAGAGGATAGTGGAAGGACAGACGGACATCCATCCCCGCAGCTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CAA 90 bp | CGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAAACCACGCTGATCGGATCTTCTaGAACTCCTCGCAGGCCAAC | + |
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Preference number: 5 (lower is better) Translates to: RDQAAAPAEALQYRQTNHADRIF*NSSQAN Trigger: GTTGGCCTGCGAGGAGTTCAAGAAGATCCGATCAGC...GTGGTTTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS TCA 90 bp | ACCTCTTTAGGGGCTTCGCTGCGGATGTACTCGTCAAAGATGTGGTaGGCCCTGGACGCCAGTTTGGTGGCTGATCGGATCTTCTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: TSLGASLRMYSSKMW*ALDASLVADRIFLN Trigger: GTTCAAGAAGATCCGATCAGCCACCAAACTGGCGTCCAGGGCTCACCACATCTTTGACGAGTACATCCGCAGCGAAGCCCCTAAAGAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CAA 90 bp | GCTGAGCTAACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTATTCCCAGCCGCGTCTaGAACTCTTTGGCTCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: AELTSVPELSWSLTGFSPIPSRV*NSLALS Trigger: GGAGAGAGCCAAAGAGTTCAAGACGCGGCTGGGAAT...AGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGTTAGCTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CAA 90 bp | ACTTCTGTTCCAGAGCTTTCTTGGTCCTTGACGGGCTTCTCCCCTAACTACAGTGCCCTGGACGCCAGTTaGGTGGCTGATCGGATCTTC | + |
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Preference number: 5 (lower is better) Translates to: TSVPELSWSLTGFSPNYSALDAS*VADRIF Trigger: GAAGATCCGATCAGCCACCAAACTGGCGTCCAGGGC...ACTGTAGTTAGGGGAGAAGCCCGTCAAGGACCAAGAAAGCTCTGGAACAGAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS-3UTR CAA 90 bp | CGTGATCAGGCAGCAGCTCCAGCTGAGGCTCTTCAGTACAGGCAAACAAACCACGAGAAGCTTCTCTCTTaGTTATGCTTACTGGCCCAC | + |
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Preference number: 5 (lower is better) Translates to: RDQAAAPAEALQYRQTNHEKLLS*LCLLAH Trigger: GTGGGCCAGTAAGCATAACAAAGAGAGAAGCTTCTC...GTGGTTTGTTTGCCTGTACTGAAGAGCCTCAGCTGGAGCTGCTGCCTGATCACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS TCA 90 bp | GGCCCACTCGAATTTGCTAATACCCCCAGTATCGGAGCTCAGCTCTaGTTTATGAAGAAAGATTCCCAGCCGCGTCTTGAACTCTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: GPLEFANTPSIGAQL*FMKKDSQPRLELFG Trigger: GCCAAAGAGTTCAAGACGCGGCTGGGAATCTTTCTTCATAAATCAGAGCTGAGCTCCGATACTGGGGGTATTAGCAAATTCGAGTGGGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS TCA 90 bp | TCGAATTTGCTAATACCCCCAGTATCGGAGCTCAGCTCTGATTTATaGAGAAAGATTCCCAGCCGCGTCTTGAACTCTTTGGCTCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SNLLIPPVSELSSDL*RKIPSRVLNSLALS Trigger: GGAGAGAGCCAAAGAGTTCAAGACGCGGCTGGGAATCTTTCTTCATAAATCAGAGCTGAGCTCCGATACTGGGGGTATTAGCAAATTCGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS GCA 90 bp | TCTCTCCATCCCAGTACATCTTCTGAGAAGCTTCTCTCTTTGTTATaGTTACTGGCCCACTCGAATTTGCTAATACCCCCAGTATCGGAG | + |
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Preference number: 5 (lower is better) Translates to: SLHPSTSSEKLLSLL*LLAHSNLLIPPVSE Trigger: CTCCGATACTGGGGGTATTAGCAAATTCGAGTGGGCCAGTAAGCATAACAAAGAGAGAAGCTTCTCAGAAGATGTACTGGGATGGAGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS TCA 90 bp | GTTCAGCAGCAAATCGAAAGACTCTCTCCATCCCAGTACATCTTCTaGGAAGCTTCTCTCTTTGTTATGCTTACTGGCCCACTCGAATTT | + |
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Preference number: 5 (lower is better) Translates to: VQQQIERLSPSQYIF*EASLFVMLTGPLEF Trigger: AAATTCGAGTGGGCCAGTAAGCATAACAAAGAGAGAAGCTTCTCAGAAGATGTACTGGGATGGAGAGAGTCTTTCGATTTGCTGCTGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS TCA 72 bp | GGGGCTTCGCTGCGGATGTACTCGTCAAAGATGTGGTaGGCCCTGGACGCCAGTTTGGTGGCTGATCGGATC | + |
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Preference number: 6 (lower is better) Translates to: GASLRMYSSKMW*ALDASLVADRI Trigger: GATCCGATCAGCCACCAAACTGGCGTCCAGGGCTCACCACATCTTTGACGAGTACATCCGCAGCGAAGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS TCA 72 bp | CTAATACCCCCAGTATCGGAGCTCAGCTCTGATTTATaGAGAAAGATTCCCAGCCGCGTCTTGAACTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: LIPPVSELSSDL*RKIPSRVLNSL Trigger: CAAAGAGTTCAAGACGCGGCTGGGAATCTTTCTTCATAAATCAGAGCTGAGCTCCGATACTGGGGGTATTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS TCA 72 bp | GAATTTGCTAATACCCCCAGTATCGGAGCTCAGCTCTaGTTTATGAAGAAAGATTCCCAGCCGCGTCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: EFANTPSIGAQL*FMKKDSQPRLE Trigger: TTCAAGACGCGGCTGGGAATCTTTCTTCATAAATCAGAGCTGAGCTCCGATACTGGGGGTATTAGCAAATTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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| CDS GCA 72 bp | CCCAGTACATCTTCTGAGAAGCTTCTCTCTTTGTTATaGTTACTGGCCCACTCGAATTTGCTAATACCCCCA | + |
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Preference number: 6 (lower is better) Translates to: PSTSSEKLLSLL*LLAHSNLLIPP Trigger: TGGGGGTATTAGCAAATTCGAGTGGGCCAGTAAGCATAACAAAGAGAGAAGCTTCTCAGAAGATGTACTGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027748.8 |
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