RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RGS13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000051079

Ensembl transcript IDs: ENSMUST00000052375.8, ENSMUST00000111941.2

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGTCACAGCATCTGGGAGCTTTTTAGGTTTGGAATGACTTTCCCTTaGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCCTTTCT +
Preference number: 1 (lower is better)
Translates to: CHSIWELFRFGMTFP*ELEINSGLGFCFLS
Trigger: AGAAAGGAAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCAAACCTAAAAAGCTCCCAGATGCTGTGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
3UTR-3UTR GCA 90 bp TTTAGGTTTGGAATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTAATTCCATTAGCACTTaGAACATGCCATCTTCCATT +
Preference number: 2 (lower is better)
Translates to: FRFGMTFPWELEINSGLGNSIST*NMPSSI
Trigger: AATGGAAGATGGCATGTTGCAAGTGCTAATGGAATT...ACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCAAACCTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
3UTR-3UTR GCA 90 bp TGGAATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTTTAGCACTTGCAACATaGCATCTTCCATTTAAACTT +
Preference number: 2 (lower is better)
Translates to: WNDFPLGTRDQLRTWFLFLALAT*HLPFKL
Trigger: AAGTTTAAATGGAAGATGGCATGTTGCAAGTGCTAA...AAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
3UTR CCA 72 bp ATCTGGGAGCTTTTTAGGTTTGGAATGACTTTCCCTTaGGAACTAGAGATCAACTCAGGACTTGGTTTCTGT +
Preference number: 3 (lower is better)
Translates to: IWELFRFGMTFP*ELEINSGLGFC
Trigger: ACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCAAACCTAAAAAGCTCCCAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR CCA 90 bp ATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCCTTCTCTCTAGGAGACTGTaGCTGGATGTAGATATTGTA +
Preference number: 4 (lower is better)
Translates to: MTFPWELEINSGLGFCFLLSRRL*LDVDIV
Trigger: TACAATATCTACATCCAGCCACAGTCTCCTAGAGAG...AAGGAAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR TCA 90 bp CTCATCTTGTGTCTTTTTCTAAATTCCATTAGCACTTGCAACATGCCATCTTCCATCCAAAGTAAGGTTTaGAGGGAGCCTCTTAGATTC +
Preference number: 4 (lower is better)
Translates to: LILCLFLNSISTCNMPSSIQSKV*REPLRF
Trigger: GAATCTAAGAGGCTCCCTTCAAACCTTACTTTGGAT...GGAAGATGGCATGTTGCAAGTGCTAATGGAATTTAGAAAAAGACACAAGATGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR TCA 90 bp CTCATCTTGTGTCTTTTTCTAAATTCCATTAGCACTTGCAACATGCCATCTTCCTCTTCAAAGCATGTTTaGGTGGGTTCACGAATGCTT +
Preference number: 4 (lower is better)
Translates to: LILCLFLNSISTCNMPSSSSKHV*VGSRML
Trigger: AAGCATTCGTGAACCCACTCAAACATGCTTTGAAGA...GGAAGATGGCATGTTGCAAGTGCTAATGGAATTTAGAAAAAGACACAAGATGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR TCA 90 bp TCTTCTCTGTTAATTCCTCTCTGTAAGGATGCTATAAATTGTGTCACAGCATCTATCCAAAGTAAGGTTTaGAGGGAGCCTCTTAGATTC +
Preference number: 4 (lower is better)
Translates to: SSLLIPLCKDAINCVTASIQSKV*REPLRF
Trigger: GAATCTAAGAGGCTCCCTTCAAACCTTACTTTGGAT...AGATGCTGTGACACAATTTATAGCATCCTTACAGAGAGGAATTAACAGAGAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR TCA 90 bp TCTTCTCTGTTAATTCCTCTCTGTAAGGATGCTATAAATTGTGTCACAGCATCTTCTTCAAAGCATGTTTaGGTGGGTTCACGAATGCTT +
Preference number: 4 (lower is better)
Translates to: SSLLIPLCKDAINCVTASSSKHV*VGSRML
Trigger: AAGCATTCGTGAACCCACTCAAACATGCTTTGAAGA...AGATGCTGTGACACAATTTATAGCATCCTTACAGAGAGGAATTAACAGAGAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR GCA 90 bp ATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCCTTCTTGTAGGTTTCACATaGCATCCAGAATTTAATGTT +
Preference number: 4 (lower is better)
Translates to: MTFPWELEINSGLGFCFLLVGFT*HPEFNV
Trigger: AACATTAAATTCTGGATGGCATGTGAAACCTACAAG...AAGGAAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR GCA 90 bp TGGAATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCTTGTAGGTTTCACATaGCATCCAGAATTTAATGTT +
Preference number: 4 (lower is better)
Translates to: WNDFPLGTRDQLRTWFLFLVGFT*HPEFNV
Trigger: AACATTAAATTCTGGATGGCATGTGAAACCTACAAG...AAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR CCA 90 bp ATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCCTTAGACTTTCCAAAGATTaGGCCCATTTTAAAACTTCA +
Preference number: 4 (lower is better)
Translates to: MTFPWELEINSGLGFCFLRLSKD*AHFKTS
Trigger: TGAAGTTTTAAAATGGGCCCAATCTTTGGAAAGTCT...AAGGAAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR CCA 90 bp CTCATCTTGTGTCTTTTTCTAAATTCCATTAGCACTTGCAACATGCCATCTTCCAGACTTTCCAAAGATTaGGCCCATTTTAAAACTTCA +
Preference number: 4 (lower is better)
Translates to: LILCLFLNSISTCNMPSSRLSKD*AHFKTS
Trigger: TGAAGTTTTAAAATGGGCCCAATCTTTGGAAAGTCT...GGAAGATGGCATGTTGCAAGTGCTAATGGAATTTAGAAAAAGACACAAGATGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR CAA 90 bp TGGAATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTAACAGTTTTCAGGAGTaGTTGGTACATTTCAGACTT +
Preference number: 5 (lower is better)
Translates to: WNDFPLGTRDQLRTWFLFNSFQE*LVHFRL
Trigger: AAGTCTGAAATGTACCAACAACTCCTGAAAACTGTT...AAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS-3UTR CAA 90 bp TCTTCTCTGTTAATTCCTCTCTGTAAGGATGCTATAAATTGTGTCACAGCATCTAACAGTTTTCAGGAGTaGTTGGTACATTTCAGACTT +
Preference number: 5 (lower is better)
Translates to: SSLLIPLCKDAINCVTASNSFQE*LVHFRL
Trigger: AAGTCTGAAATGTACCAACAACTCCTGAAAACTGTT...AGATGCTGTGACACAATTTATAGCATCCTTACAGAGAGGAATTAACAGAGAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS CAA 90 bp TTCCATGTGCATGTATACAATCTTCTGAGCTTCTTCAAAGCATGTTaGAGTGGGTTCACGAATGCTTTTGATGATAGCTTCCCGTGTTGT +
Preference number: 6 (lower is better)
Translates to: FHVHVYNLLSFFKAC*SGFTNAFDDSFPCC
Trigger: ACAACACGGGAAGCTATCATCAAAAGCATTCGTGAACCCACTCAAACATGCTTTGAAGAAGCTCAGAAGATTGTATACATGCACATGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2
CDS CAA 72 bp CATGTATACAATCTTCTGAGCTTCTTCAAAGCATGTTaGAGTGGGTTCACGAATGCTTTTGATGATAGCTTC +
Preference number: 6 (lower is better)
Translates to: HVYNLLSFFKAC*SGFTNAFDDSF
Trigger: GAAGCTATCATCAAAAGCATTCGTGAACCCACTCAAACATGCTTTGAAGAAGCTCAGAAGATTGTATACATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052375.8
ENSMUST00000111941.2