Pregenerated sensors for RGS13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051079Ensembl transcript IDs: ENSMUST00000052375.8, ENSMUST00000111941.2
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | TGTCACAGCATCTGGGAGCTTTTTAGGTTTGGAATGACTTTCCCTTaGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCCTTTCT | + |
Preference number: 1 (lower is better) Translates to: CHSIWELFRFGMTFP*ELEINSGLGFCFLS Trigger: AGAAAGGAAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCAAACCTAAAAAGCTCCCAGATGCTGTGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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3UTR-3UTR GCA 90 bp | TTTAGGTTTGGAATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTAATTCCATTAGCACTTaGAACATGCCATCTTCCATT | + |
Preference number: 2 (lower is better) Translates to: FRFGMTFPWELEINSGLGNSIST*NMPSSI Trigger: AATGGAAGATGGCATGTTGCAAGTGCTAATGGAATT...ACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCAAACCTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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3UTR-3UTR GCA 90 bp | TGGAATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTTTAGCACTTGCAACATaGCATCTTCCATTTAAACTT | + |
Preference number: 2 (lower is better) Translates to: WNDFPLGTRDQLRTWFLFLALAT*HLPFKL Trigger: AAGTTTAAATGGAAGATGGCATGTTGCAAGTGCTAA...AAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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3UTR CCA 72 bp | ATCTGGGAGCTTTTTAGGTTTGGAATGACTTTCCCTTaGGAACTAGAGATCAACTCAGGACTTGGTTTCTGT | + |
Preference number: 3 (lower is better) Translates to: IWELFRFGMTFP*ELEINSGLGFC Trigger: ACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCAAACCTAAAAAGCTCCCAGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR CCA 90 bp | ATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCCTTCTCTCTAGGAGACTGTaGCTGGATGTAGATATTGTA | + |
Preference number: 4 (lower is better) Translates to: MTFPWELEINSGLGFCFLLSRRL*LDVDIV Trigger: TACAATATCTACATCCAGCCACAGTCTCCTAGAGAG...AAGGAAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR TCA 90 bp | CTCATCTTGTGTCTTTTTCTAAATTCCATTAGCACTTGCAACATGCCATCTTCCATCCAAAGTAAGGTTTaGAGGGAGCCTCTTAGATTC | + |
Preference number: 4 (lower is better) Translates to: LILCLFLNSISTCNMPSSIQSKV*REPLRF Trigger: GAATCTAAGAGGCTCCCTTCAAACCTTACTTTGGAT...GGAAGATGGCATGTTGCAAGTGCTAATGGAATTTAGAAAAAGACACAAGATGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR TCA 90 bp | CTCATCTTGTGTCTTTTTCTAAATTCCATTAGCACTTGCAACATGCCATCTTCCTCTTCAAAGCATGTTTaGGTGGGTTCACGAATGCTT | + |
Preference number: 4 (lower is better) Translates to: LILCLFLNSISTCNMPSSSSKHV*VGSRML Trigger: AAGCATTCGTGAACCCACTCAAACATGCTTTGAAGA...GGAAGATGGCATGTTGCAAGTGCTAATGGAATTTAGAAAAAGACACAAGATGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR TCA 90 bp | TCTTCTCTGTTAATTCCTCTCTGTAAGGATGCTATAAATTGTGTCACAGCATCTATCCAAAGTAAGGTTTaGAGGGAGCCTCTTAGATTC | + |
Preference number: 4 (lower is better) Translates to: SSLLIPLCKDAINCVTASIQSKV*REPLRF Trigger: GAATCTAAGAGGCTCCCTTCAAACCTTACTTTGGAT...AGATGCTGTGACACAATTTATAGCATCCTTACAGAGAGGAATTAACAGAGAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR TCA 90 bp | TCTTCTCTGTTAATTCCTCTCTGTAAGGATGCTATAAATTGTGTCACAGCATCTTCTTCAAAGCATGTTTaGGTGGGTTCACGAATGCTT | + |
Preference number: 4 (lower is better) Translates to: SSLLIPLCKDAINCVTASSSKHV*VGSRML Trigger: AAGCATTCGTGAACCCACTCAAACATGCTTTGAAGA...AGATGCTGTGACACAATTTATAGCATCCTTACAGAGAGGAATTAACAGAGAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR GCA 90 bp | ATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCCTTCTTGTAGGTTTCACATaGCATCCAGAATTTAATGTT | + |
Preference number: 4 (lower is better) Translates to: MTFPWELEINSGLGFCFLLVGFT*HPEFNV Trigger: AACATTAAATTCTGGATGGCATGTGAAACCTACAAG...AAGGAAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR GCA 90 bp | TGGAATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCTTGTAGGTTTCACATaGCATCCAGAATTTAATGTT | + |
Preference number: 4 (lower is better) Translates to: WNDFPLGTRDQLRTWFLFLVGFT*HPEFNV Trigger: AACATTAAATTCTGGATGGCATGTGAAACCTACAAG...AAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR CCA 90 bp | ATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTCCTTAGACTTTCCAAAGATTaGGCCCATTTTAAAACTTCA | + |
Preference number: 4 (lower is better) Translates to: MTFPWELEINSGLGFCFLRLSKD*AHFKTS Trigger: TGAAGTTTTAAAATGGGCCCAATCTTTGGAAAGTCT...AAGGAAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR CCA 90 bp | CTCATCTTGTGTCTTTTTCTAAATTCCATTAGCACTTGCAACATGCCATCTTCCAGACTTTCCAAAGATTaGGCCCATTTTAAAACTTCA | + |
Preference number: 4 (lower is better) Translates to: LILCLFLNSISTCNMPSSRLSKD*AHFKTS Trigger: TGAAGTTTTAAAATGGGCCCAATCTTTGGAAAGTCT...GGAAGATGGCATGTTGCAAGTGCTAATGGAATTTAGAAAAAGACACAAGATGAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR CAA 90 bp | TGGAATGACTTTCCCTTGGGAACTAGAGATCAACTCAGGACTTGGTTTCTGTTTAACAGTTTTCAGGAGTaGTTGGTACATTTCAGACTT | + |
Preference number: 5 (lower is better) Translates to: WNDFPLGTRDQLRTWFLFNSFQE*LVHFRL Trigger: AAGTCTGAAATGTACCAACAACTCCTGAAAACTGTT...AAACAGAAACCAAGTCCTGAGTTGATCTCTAGTTCCCAAGGGAAAGTCATTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS-3UTR CAA 90 bp | TCTTCTCTGTTAATTCCTCTCTGTAAGGATGCTATAAATTGTGTCACAGCATCTAACAGTTTTCAGGAGTaGTTGGTACATTTCAGACTT | + |
Preference number: 5 (lower is better) Translates to: SSLLIPLCKDAINCVTASNSFQE*LVHFRL Trigger: AAGTCTGAAATGTACCAACAACTCCTGAAAACTGTT...AGATGCTGTGACACAATTTATAGCATCCTTACAGAGAGGAATTAACAGAGAAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS CAA 90 bp | TTCCATGTGCATGTATACAATCTTCTGAGCTTCTTCAAAGCATGTTaGAGTGGGTTCACGAATGCTTTTGATGATAGCTTCCCGTGTTGT | + |
Preference number: 6 (lower is better) Translates to: FHVHVYNLLSFFKAC*SGFTNAFDDSFPCC Trigger: ACAACACGGGAAGCTATCATCAAAAGCATTCGTGAACCCACTCAAACATGCTTTGAAGAAGCTCAGAAGATTGTATACATGCACATGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |
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CDS CAA 72 bp | CATGTATACAATCTTCTGAGCTTCTTCAAAGCATGTTaGAGTGGGTTCACGAATGCTTTTGATGATAGCTTC | + |
Preference number: 6 (lower is better) Translates to: HVYNLLSFFKAC*SGFTNAFDDSF Trigger: GAAGCTATCATCAAAAGCATTCGTGAACCCACTCAAACATGCTTTGAAGAAGCTCAGAAGATTGTATACATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052375.8 ENSMUST00000111941.2 |