RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RGR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021804

Ensembl transcript IDs: ENSMUST00000022338.7, ENSMUST00000225070.2, ENSMUST00000225229.2, ENSMUST00000225403.2

Found 249 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTCCCCAGGAACTTGCCTGCTCAGGCTCTCAGCTTTATAGGATGTaGTTTCTGCCTCTCACAGTCCCTGGGACACCTGCCCCTTCCACC +
Preference number: 1 (lower is better)
Translates to: PPQELACSGSQLYRM*FLPLTVPGTPAPST
Trigger: GGTGGAAGGGGCAGGTGTCCCAGGGACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 90 bp GTACAGGAGGGCATAGGGGCCCCAGCCAAGCAGCAGCATTCTGCCTaGAAGAGTAGTATTCACCGGGAGATGGCCACTCCTGGAGAATTT +
Preference number: 1 (lower is better)
Translates to: VQEGIGAPAKQQHSA*KSSIHREMATPGEF
Trigger: AAATTCTCCAGGAGTGGCCATCTCCCGGTGAATACTACTCTTCCAGGCAGAATGCTGCTGCTTGGCTGGGGCCCCTATGCCCTCCTGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
3UTR GCA 90 bp GCACAATGTCTCTGGTCCTCACTCTTCTTCCCTGACTTCTCAGGCTaGAGAGCTTCTCCCTTTGCGCTCATTATCCTCGCTGTGATGAGG +
Preference number: 1 (lower is better)
Translates to: AQCLWSSLFFPDFSG*RASPFALIILAVMR
Trigger: CCTCATCACAGCGAGGATAATGAGCGCAAAGGGAGAAGCTCTGCAGCCTGAGAAGTCAGGGAAGAAGAGTGAGGACCAGAGACATTGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 90 bp CTTGGGTCCTTGGGTTCTGTAGCTGAGACTGCAGCACAATGTCTCTaGTCCTCACTCTTCTTCCCTGACTTCTCAGGCTGCAGAGCTTCT +
Preference number: 1 (lower is better)
Translates to: LGSLGSVAETAAQCL*SSLFFPDFSGCRAS
Trigger: AGAAGCTCTGCAGCCTGAGAAGTCAGGGAAGAAGAGTGAGGACCAGAGACATTGTGCTGCAGTCTCAGCTACAGAACCCAAGGACCCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 90 bp GTTCTGAAACTGGGTGTCAATTTCAGCCCCAGGTCTCAGAGCACATaGTCGCTCTTATGTTCAGCTGTCCCTGACATCTCAGTATGGCCC +
Preference number: 1 (lower is better)
Translates to: VLKLGVNFSPRSQST*SLLCSAVPDISVWP
Trigger: GGGCCATACTGAGATGTCAGGGACAGCTGAACATAAGAGCGAGCATGTGCTCTGAGACCTGGGGCTGAAATTGACACCCAGTTTCAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR CCA 90 bp CTGAATTACTCCATGGAAGGGCAAGGCAGGGGTACTAGAGGTGAATaGGAAGCAGGGCAGAGGAGAAGCCTTTCCTACATGCACTCAAGA +
Preference number: 1 (lower is better)
Translates to: LNYSMEGQGRGTRGE*EAGQRRSLSYMHSR
Trigger: TCTTGAGTGCATGTAGGAAAGGCTTCTCCTCTGCCCTGCTTCCCATTCACCTCTAGTACCCCTGCCTTGCCCTTCCATGGAGTAATTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 90 bp CCAAGCAGCAGCATTCTGCCTGGAAGAGTAGTATTCACCGGGAGATaGCCACTCCTGGAGAATTTCTGCTCCATGAACCGGTATGAAGTG +
Preference number: 1 (lower is better)
Translates to: PSSSILPGRVVFTGR*PLLENFCSMNRYEV
Trigger: CACTTCATACCGGTTCATGGAGCAGAAATTCTCCAGGAGTGGCCATCTCCCGGTGAATACTACTCTTCCAGGCAGAATGCTGCTGCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
3UTR GCA 90 bp GGAAGAGTAGTATTCACCGGGAGATGGCCACTCCTGGAGAATTTCTaGTCCATGAACCGGTATGAAGTGTGTGTGATGAACAGGGGTACG +
Preference number: 1 (lower is better)
Translates to: GRVVFTGRWPLLENF*SMNRYEVCVMNRGT
Trigger: CGTACCCCTGTTCATCACACACACTTCATACCGGTTCATGGAGCAGAAATTCTCCAGGAGTGGCCATCTCCCGGTGAATACTACTCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
3UTR CCA 90 bp TTGACCCTGGCACAGGCTCATGTCACCATTGCCATGCACTGTGTGTaGCACATATTAGCTGTTGAGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: LTLAQAHVTIAMHCV*HILAVECVCVCVCV
Trigger: CACACACACACACACACACACACACTCAACAGCTAATATGTGCCACACACAGTGCATGGCAATGGTGACATGAGCCTGTGCCAGGGTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 90 bp GCTTGCCTGGTTCCTGCAGTTGGCCTGATTCCTGTTGACTTTTTCTaGGTTCATCCTAGAGGTCTGCATCTCAGTGAAGCAAAGAGTGCT +
Preference number: 1 (lower is better)
Translates to: ACLVPAVGLIPVDFF*VHPRGLHLSEAKSA
Trigger: AGCACTCTTTGCTTCACTGAGATGCAGACCTCTAGGATGAACTCAGAAAAAGTCAACAGGAATCAGGCCAACTGCAGGAACCAGGCAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 90 bp GCTAAACAGAACCATGTATGTTCTGGGCAAAGGACACAGTCATCCTaGGCTCTGGAGACTGTCACTGTGGAGAGGAAATCAAAGATGTGG +
Preference number: 1 (lower is better)
Translates to: AKQNHVCSGQRTQSS*ALETVTVERKSKMW
Trigger: CCACATCTTTGATTTCCTCTCCACAGTGACAGTCTCCAGAGCTCAGGATGACTGTGTCCTTTGCCCAGAACATACATGGTTCTGTTTAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 90 bp TCATGTCACCATTGCCATGCACTGTGTGTGGCACATATTAGCTGTTaGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: SCHHCHALCVAHISC*VCVCVCVCVCVCVC
Trigger: ACACACACACACACACACACACACACACACACACACACACACTCAACAGCTAATATGTGCCACACACAGTGCATGGCAATGGTGACATGA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 90 bp TATTGGTCACCTGCTCCACCCATGTGTAAGCCACCAAGACTTCCTTaGTTCATTTTCTATGCAGAGTCTAGGTCAAGCATCATATGCGGG +
Preference number: 1 (lower is better)
Translates to: YWSPAPPMCKPPRLP*FIFYAESRSSIICG
Trigger: CCCGCATATGATGCTTGACCTAGACTCTGCATAGAAAATGAAGCAAGGAAGTCTTGGTGGCTTACACATGGGTGGAGCAGGTGACCAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 90 bp AGAACCATGTATGTTCTGGGCAAAGGACACAGTCATCCTGAGCTCTaGAGACTGTCACTGTGGAGAGGAAATCAAAGATGTGGCTCCATA +
Preference number: 1 (lower is better)
Translates to: RTMYVLGKGHSHPEL*RLSLWRGNQRCGSI
Trigger: TATGGAGCCACATCTTTGATTTCCTCTCCACAGTGACAGTCTCCAGAGCTCAGGATGACTGTGTCCTTTGCCCAGAACATACATGGTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 90 bp CTTCCTTGCTTCATTTTCTATGCAGAGTCTAGGTCAAGCATCATATaGGGGCCCTGGAGTGTGGCCAAGTGTCATCTTGTCTGTATATCA +
Preference number: 1 (lower is better)
Translates to: LPCFIFYAESRSSII*GPWSVAKCHLVCIS
Trigger: TGATATACAGACAAGATGACACTTGGCCACACTCCAGGGCCCGCATATGATGCTTGACCTAGACTCTGCATAGAAAATGAAGCAAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 90 bp GGACAGGACACTGTACTGATAGATACAATTGAGGGCACACATGAGTaGATGGAGGAAAGAAATCTAGCAAGCCCCGAGGATCATCAATTG +
Preference number: 1 (lower is better)
Translates to: GQDTVLIDTIEGTHE*MEERNLASPEDHQL
Trigger: CAATTGATGATCCTCGGGGCTTGCTAGATTTCTTTCCTCCATTCACTCATGTGTGCCCTCAATTGTATCTATCAGTACAGTGTCCTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 90 bp GGACAAGAGCAAAAGACAGAGATAGGATTACAAGCACTAAGTGGATaGTGGCATACAAAGAAGGAAGTGCTGCTTGCAGTGTTGTTCTGG +
Preference number: 1 (lower is better)
Translates to: GQEQKTEIGLQALSG*WHTKKEVLLAVLFW
Trigger: CCAGAACAACACTGCAAGCAGCACTTCCTTCTTTGTATGCCAGCATCCACTTAGTGCTTGTAATCCTATCTCTGTCTTTTGCTCTTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 90 bp TCTCATGAAGGACTAGGCACCTGTTATATCTTGATTCTAAGTTGCTaGGTCAATAGAAGGTGCAGATGTATATCTAAAGGTGACCGGGGC +
Preference number: 1 (lower is better)
Translates to: SHEGLGTCYILILSC*VNRRCRCISKGDRG
Trigger: GCCCCGGTCACCTTTAGATATACATCTGCACCTTCTATTGACTCAGCAACTTAGAATCAAGATATAACAGGTGCCTAGTCCTTCATGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 90 bp AGAGACACTCTAAAGTTCACAGGGGAAATTGAGAATAGGGTAGATTaGGGTCTTAGAAATGAGTGGCTTTGTTTGGACTTTTGTTGGATG +
Preference number: 1 (lower is better)
Translates to: RDTLKFTGEIENRVD*GLRNEWLCLDFCWM
Trigger: CATCCAACAAAAGTCCAAACAAAGCCACTCATTTCTAAGACCCCAATCTACCCTATTCTCAATTTCCCCTGTGAACTTTAGAGTGTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 90 bp AGGCTCATATCAGTATCTGTTTCAGTGAGCATTTTATGTGCTTGCTaGATACACATGTTAGCTTGTTCAACTGTTCTAGCGTTAGTCCAC +
Preference number: 1 (lower is better)
Translates to: RLISVSVSVSILCAC*IHMLACSTVLALVH
Trigger: GTGGACTAACGCTAGAACAGTTGAACAAGCTAACATGTGTATTCAGCAAGCACATAAAATGCTCACTGAAACAGATACTGATATGAGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 90 bp TCATTACAATTAAGCACATGCTATTTGAAAGATGGCAGCCTCAGATaGCTTCCAAAAACAAACAAGTCCCAGGGCTTTCTCCTTTTATTG +
Preference number: 1 (lower is better)
Translates to: SLQLSTCYLKDGSLR*LPKTNKSQGFLLLL
Trigger: CAATAAAAGGAGAAAGCCCTGGGACTTGTTTGTTTTTGGAAGTCATCTGAGGCTGCCATCTTTCAAATAGCATGTGCTTAATTGTAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp GTAGATGAGCTCACTACTCTCCTCCCCAGGAACTTGCCTGCTCAGGCTCTCAGCGCGGGCCCTGGAGTGTaGCCAAGTGTCATCTTGTCT +
Preference number: 2 (lower is better)
Translates to: VDELTTLLPRNLPAQALSAGPGV*PSVILS
Trigger: AGACAAGATGACACTTGGCCACACTCCAGGGCCCGC...GCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp GTAGATGAGCTCACTACTCTCCTCCCCAGGAACTTGCCTGCTCAGGCTCTCAGCCCAACTCGAGGCACGTaGGCTCTTCAGAGAACCCAT +
Preference number: 2 (lower is better)
Translates to: VDELTTLLPRNLPAQALSPTRGT*ALQRTH
Trigger: ATGGGTTCTCTGAAGAGCCCACGTGCCTCGAGTTGG...GCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp CTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGCTCACTCTTCTTCCCTaGCTTCTCAGGCTGCAGAGC +
Preference number: 2 (lower is better)
Translates to: LHRHVRERSGERPNLQARLTLLP*LLRLQS
Trigger: GCTCTGCAGCCTGAGAAGTCAGGGAAGAAGAGTGAG...CCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp GTAGATGAGCTCACTACTCTCCTCCCCAGGAACTTGCCTGCTCAGGCTCTCAGCCTGATTTCCTGCATCTaGAGAACCAGGAGGCAACCC +
Preference number: 2 (lower is better)
Translates to: VDELTTLLPRNLPAQALSLISCI*RTRRQP
Trigger: GGGTTGCCTCCTGGTTCTCCAGATGCAGGAAATCAG...GCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CTCCCACTCTTGCTACTTGTCTTCTGGCTCCGCCTGTCTTCAACCCTTTCTCTCGCGGGCCCTGGAGTGTaGCCAAGTGTCATCTTGTCT +
Preference number: 2 (lower is better)
Translates to: LPLLLLVFWLRLSSTLSLAGPGV*PSVILS
Trigger: AGACAAGATGACACTTGGCCACACTCCAGGGCCCGC...GAGAGAAAGGGTTGAAGACAGGCGGAGCCAGAAGACAAGTAGCAAGAGTGGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp ACACCCACACACGCACACACACAGAAGAGGTGGGGACAAGAGCAAAAGACAGAGTGTTGTTCTGGGGCCTaGTGCTTGCCTGGTTCCTGC +
Preference number: 2 (lower is better)
Translates to: TPTHAHTQKRWGQEQKTECCSGA*CLPGSC
Trigger: GCAGGAACCAGGCAAGCACCAGGCCCCAGAACAACA...CTCTGTCTTTTGCTCTTGTCCCCACCTCTTCTGTGTGTGTGCGTGTGTGGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CCTCCCACTCTTGCTACTTGTCTTCTGGCTCCGCCTGTCTTCAACCCTTTCTCTCCTGACATCTCAGTATaGCCCAGGATGGGGAGGGGT +
Preference number: 2 (lower is better)
Translates to: PPTLATCLLAPPVFNPFSPDISV*PRMGRG
Trigger: ACCCCTCCCCATCCTGGGCCATACTGAGATGTCAGG...AGAGAAAGGGTTGAAGACAGGCGGAGCCAGAAGACAAGTAGCAAGAGTGGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp CTGGGACACCTGCCCCTTCCACCATTAGACTTCCAGGATGGTCTCCATTACCCTCATCTTCCTGACCTCTaGCCTGGGGCATACTTAACC +
Preference number: 2 (lower is better)
Translates to: LGHLPLPPLDFQDGLHYPHLPDL*PGAYLT
Trigger: GGTTAAGTATGCCCCAGGTCAGAGGTCAGGAAGATG...AGGGTAATGGAGACCATCCTGGAAGTCTAATGGTGGAAGGGGCAGGTGTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp CTGGGACACCTGCCCCTTCCACCATTAGACTTCCAGGATGGTCTCCATTACCCTATGTTCAGCTGTCCCTaGCATCTCAGTATGGCCCAG +
Preference number: 2 (lower is better)
Translates to: LGHLPLPPLDFQDGLHYPMFSCP*HLSMAQ
Trigger: CTGGGCCATACTGAGATGTCAGGGACAGCTGAACAT...AGGGTAATGGAGACCATCCTGGAAGTCTAATGGTGGAAGGGGCAGGTGTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp CTGGGACACCTGCCCCTTCCACCATTAGACTTCCAGGATGGTCTCCATTACCCTGTCCCACTCAGGACATaGCTTTTTGGTCTCACCCTC +
Preference number: 2 (lower is better)
Translates to: LGHLPLPPLDFQDGLHYPVPLRT*LFGLTL
Trigger: GAGGGTGAGACCAAAAAGTCATGTCCTGAGTGGGAC...AGGGTAATGGAGACCATCCTGGAAGTCTAATGGTGGAAGGGGCAGGTGTCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp GTAGATGAGCTCACTACTCTCCTCCCCAGGAACTTGCCTGCTCAGGCTCTCAGCGACTGTTGGGAAGTATaGAGCAGCATCTTCCTGACC +
Preference number: 2 (lower is better)
Translates to: VDELTTLLPRNLPAQALSDCWEV*SSIFLT
Trigger: GGTCAGGAAGATGCTGCTGCATACTTCCCAACAGTC...GCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CGAGGATCATCAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCCCAACTCGAGGCACGTaGGCTCTTCAGAGAACCCAT +
Preference number: 2 (lower is better)
Translates to: RGSSIASQACEGEKWGETPTRGT*ALQRTH
Trigger: ATGGGTTCTCTGAAGAGCCCACGTGCCTCGAGTTGG...GGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTGATGATCCTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp GAGAAGCCTTTCCTACATGCACTCAAGATCCTGCGAGTGCCCAAAGATGAAGAGGCAGCAGCATCTTCCTaGCCTCTGACCTGGGGCATA +
Preference number: 2 (lower is better)
Translates to: EKPFLHALKILRVPKDEEAAASS*PLTWGI
Trigger: TATGCCCCAGGTCAGAGGTCAGGAAGATGCTGCTGC...CTCTTCATCTTTGGGCACTCGCAGGATCTTGAGTGCATGTAGGAAAGGCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp CAGCACAATGTCTCTGGTCCTCACTCTTCTTCCCTGACTTCTCAGGCTGCAGAGTTTCACAGAGCATGGTaGAGCCAGGGATGGGCAACA +
Preference number: 2 (lower is better)
Translates to: QHNVSGPHSSSLTSQAAEFHRAW*SQGWAT
Trigger: TGTTGCCCATCCCTGGCTTCACCATGCTCTGTGAAA...CTCTGCAGCCTGAGAAGTCAGGGAAGAAGAGTGAGGACCAGAGACATTGTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp CTGGGACACCTGCCCCTTCCACCATTAGACTTCCAGGATGGTCTCCATTACCCTAGGGTTCATTTTGAATaGTGGTGCTGGTGGTCAGGG +
Preference number: 2 (lower is better)
Translates to: LGHLPLPPLDFQDGLHYPRVHFE*WCWWSG
Trigger: CCCTGACCACCAGCACCAGCATTCAAAATGAACCCT...AGGGTAATGGAGACCATCCTGGAAGTCTAATGGTGGAAGGGGCAGGTGTCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp ATGCAGAGTCTAGGTCAAGCATCATATGCGGGCCCTGGAGTGTGGCCAAGTGTCAGGGTTCATTTTGAATaGTGGTGCTGGTGGTCAGGG +
Preference number: 2 (lower is better)
Translates to: MQSLGQASYAGPGVWPSVRVHFE*WCWWSG
Trigger: CCCTGACCACCAGCACCAGCATTCAAAATGAACCCT...GACACTTGGCCACACTCCAGGGCCCGCATATGATGCTTGACCTAGACTCTGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CCTCCCACTCTTGCTACTTGTCTTCTGGCTCCGCCTGTCTTCAACCCTTTCTCTCTGATTTCCTGCATCTaGAGAACCAGGAGGCAACCC +
Preference number: 2 (lower is better)
Translates to: PPTLATCLLAPPVFNPFSLISCI*RTRRQP
Trigger: GGGTTGCCTCCTGGTTCTCCAGATGCAGGAAATCAG...AGAGAAAGGGTTGAAGACAGGCGGAGCCAGAAGACAAGTAGCAAGAGTGGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 90 bp GAGGTCTGCATCTCAGTGAAGCAAAGAGTGCTGAAGCCAATGAGATaGGAAGGGAAGTTCAGACAGGCTCCCCAGGAAAGCAGTGATGGC +
Preference number: 2 (lower is better)
Translates to: EVCISVKQRVLKPMR*EGKFRQAPQESSDG
Trigger: GCCATCACTGCTTTCCTGGGGAGCCTGTCTGAACTTCCCTTCCAATCTCATTGGCTTCAGCACTCTTTGCTTCACTGAGATGCAGACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 90 bp CCCAGTCCCACTCAGGACATGACTTTTTGGTCTCACCCTCCCCGCTaGGAACTATCACTTATTTGTCCTCAGCTTGATCCACTGGCCTCT +
Preference number: 2 (lower is better)
Translates to: PSPTQDMTFWSHPPR*ELSLICPQLDPLAS
Trigger: AGAGGCCAGTGGATCAAGCTGAGGACAAATAAGTGATAGTTCCAAGCGGGGAGGGTGAGACCAAAAAGTCATGTCCTGAGTGGGACTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp ACTCCATGGAAGGGCAAGGCAGGGGTACTAGAGGTGAATGGGAAGCAGGGCAGACCCTTTCTCTCTATCTaGAGGGTCTTTCCCCTAATT +
Preference number: 2 (lower is better)
Translates to: TPWKGKAGVLEVNGKQGRPFLSI*RVFPLI
Trigger: AATTAGGGGAAAGACCCTTCAGATAGAGAGAAAGGG...TCTGCCCTGCTTCCCATTCACCTCTAGTACCCCTGCCTTGCCCTTCCATGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp AGCAGCATTCTGCCTGGAAGAGTAGTATTCACCGGGAGATGGCCACTCCTGGAGCTCCATGAACCGGTATaGAGTGTGTGTGATGAACAG +
Preference number: 2 (lower is better)
Translates to: SSILPGRVVFTGRWPLLELHEPV*SVCDEQ
Trigger: CTGTTCATCACACACACTTCATACCGGTTCATGGAG...CTCCAGGAGTGGCCATCTCCCGGTGAATACTACTCTTCCAGGCAGAATGCTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
3UTR-3UTR GCA 90 bp TTGGTCTCTCTTGACCCAGAGACAGCTGAATTACTCCATGGAAGGGCAAGGCAGCATTTTGAATGCTGGTaGTGGTGGTCAGGGGACACC +
Preference number: 2 (lower is better)
Translates to: LVSLDPETAELLHGRARQHFECW*WWSGDT
Trigger: GGTGTCCCCTGACCACCAGCACCAGCATTCAAAATG...CTGCCTTGCCCTTCCATGGAGTAATTCAGCTGTCTCTGGGTCAAGAGAGACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp TTCTCAGGCTGCAGAGCTTCTCCCTTTGCGCTCATTATCCTCGCTGTGATGAGGACAGCCTGGCCAATCTaGCTTCTTCCCATGTCTTCA +
Preference number: 2 (lower is better)
Translates to: FSGCRASPFALIILAVMRTAWPI*LLPMSS
Trigger: TGAAGACATGGGAAGAAGGCAGATTGGCCAGGCTGT...CCTCATCACAGCGAGGATAATGAGCGCAAAGGGAGAAGCTCTGCAGCCTGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CAGCACAATGTCTCTGGTCCTCACTCTTCTTCCCTGACTTCTCAGGCTGCAGAGGTTCATTTTGAATGCTaGTGCTGGTGGTCAGGGGAC +
Preference number: 2 (lower is better)
Translates to: QHNVSGPHSSSLTSQAAEVHFEC*CWWSGD
Trigger: GTCCCCTGACCACCAGCACCAGCATTCAAAATGAAC...CTCTGCAGCCTGAGAAGTCAGGGAAGAAGAGTGAGGACCAGAGACATTGTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp ATCTCAGTGAAGCAAAGAGTGCTGAAGCCAATGAGATTGGAAGGGAAGTTCAGAGCCTCTCACAGTCCCTaGGACACCTGCCCCTTCCAC +
Preference number: 2 (lower is better)
Translates to: ISVKQRVLKPMRLEGKFRASHSP*DTCPFH
Trigger: GTGGAAGGGGCAGGTGTCCCAGGGACTGTGAGAGGC...TCTGAACTTCCCTTCCAATCTCATTGGCTTCAGCACTCTTTGCTTCACTGAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGGAGAATCCAGAGACTTaGACAAAGCTGATACCTCCC +
Preference number: 2 (lower is better)
Translates to: LHRHVRERSGERPNLQARENPET*TKLIPP
Trigger: GGGAGGTATCAGCTTTGTCCAAGTCTCTGGATTCTC...CCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp CGAGGATCATCAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCGGTAAGAGTCTGGCATaGTTTCTAGGACTGTTGGGA +
Preference number: 2 (lower is better)
Translates to: RGSSIASQACEGEKWGETGKSLA*FLGLLG
Trigger: TCCCAACAGTCCTAGAAATCATGCCAGACTCTTACC...GGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTGATGATCCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp TTGGTCTCTCTTGACCCAGAGACAGCTGAATTACTCCATGGAAGGGCAAGGCAGATTGGGCTTGGATGCTaGTCCCTTTGGCCTGTTTCT +
Preference number: 2 (lower is better)
Translates to: LVSLDPETAELLHGRARQIGLGC*SLWPVS
Trigger: AGAAACAGGCCAAAGGGATCAGCATCCAAGCCCAAT...CTGCCTTGCCCTTCCATGGAGTAATTCAGCTGTCTCTGGGTCAAGAGAGACCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp ATGCAGAGTCTAGGTCAAGCATCATATGCGGGCCCTGGAGTGTGGCCAAGTGTCTATAACCTGATTTCCTaGATCTGGAGAACCAGGAGG +
Preference number: 2 (lower is better)
Translates to: MQSLGQASYAGPGVWPSVYNLIS*IWRTRR
Trigger: CCTCCTGGTTCTCCAGATGCAGGAAATCAGGTTATA...GACACTTGGCCACACTCCAGGGCCCGCATATGATGCTTGACCTAGACTCTGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CTTGCCTGCTCAGGCTCTCAGCTTTATAGGATGTGCTTTCTGCCTCTCACAGTCGTTCATTTTGAATGCTaGTGCTGGTGGTCAGGGGAC +
Preference number: 2 (lower is better)
Translates to: LACSGSQLYRMCFLPLTVVHFEC*CWWSGD
Trigger: GTCCCCTGACCACCAGCACCAGCATTCAAAATGAAC...GACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGAGCCTGAGCAGGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp GAGAAGCCTTTCCTACATGCACTCAAGATCCTGCGAGTGCCCAAAGATGAAGAGATCATATGCGGGCCCTaGAGTGTGGCCAAGTGTCAT +
Preference number: 2 (lower is better)
Translates to: EKPFLHALKILRVPKDEEIICGP*SVAKCH
Trigger: ATGACACTTGGCCACACTCCAGGGCCCGCATATGAT...CTCTTCATCTTTGGGCACTCGCAGGATCTTGAGTGCATGTAGGAAAGGCTTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGAAATCTGCCGAGAATCCAGAGACTTaGACAAAGCTGATACCTCCC +
Preference number: 2 (lower is better)
Translates to: HVRERSGERPNLQARKSAENPET*TKLIPP
Trigger: GGGAGGTATCAGCTTTGTCCAAGTCTCTGGATTCTC...GGCAGATTTCCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGAAATCTGCCTGGACTTTTGTTGGATaGGCTTCTGTCCCTTCCCAT +
Preference number: 2 (lower is better)
Translates to: HVRERSGERPNLQARKSAWTFVG*ASVPSH
Trigger: ATGGGAAGGGACAGAAGCCCATCCAACAAAAGTCCA...GGCAGATTTCCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 90 bp AATCTGCAAGTTGTAGATGAGCTCACTACTCTCCTCCCCAGGAACTaGCCTGCTCAGGCTCTCAGCTTTATAGGATGTGCTTTCTGCCTC +
Preference number: 2 (lower is better)
Translates to: NLQVVDELTTLLPRN*PAQALSFIGCAFCL
Trigger: GAGGCAGAAAGCACATCCTATAAAGCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTACAACTTGCAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 90 bp GGTCAAGCATCATATGCGGGCCCTGGAGTGTGGCCAAGTGTCATCTaGTCTGTATATCACCTGGTTGAGTACATAATCCAGAAAAGGGCG +
Preference number: 2 (lower is better)
Translates to: GQASYAGPGVWPSVI*SVYHLVEYIIQKRA
Trigger: CGCCCTTTTCTGGATTATGTACTCAACCAGGTGATATACAGACAAGATGACACTTGGCCACACTCCAGGGCCCGCATATGATGCTTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 90 bp GATGGATCTCAAGCATTATTGAGCCACATCCTTCCTTGGTCTCTCTaGACCCAGAGACAGCTGAATTACTCCATGGAAGGGCAAGGCAGG +
Preference number: 2 (lower is better)
Translates to: DGSQALLSHILPWSL*TQRQLNYSMEGQGR
Trigger: CCTGCCTTGCCCTTCCATGGAGTAATTCAGCTGTCTCTGGGTCAAGAGAGACCAAGGAAGGATGTGGCTCAATAATGCTTGAGATCCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp TCAATGTCAATAATGGTGGAAGAGAGGAAGGGTCCCCAACAAGGTTACTCAGGGAGGACACAGTCATCCTaGGCTCTGGAGACTGTCACT +
Preference number: 2 (lower is better)
Translates to: SMSIMVEERKGPQQGYSGRTQSS*ALETVT
Trigger: AGTGACAGTCTCCAGAGCTCAGGATGACTGTGTCCT...CCCTGAGTAACCTTGTTGGGGACCCTTCCTCTCTTCCACCATTATTGACATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp GCTCTTCAGAGAACCCATGAGCTAAACAGAACCATGTATGTTCTGGGCAAAGGACTCAGCTTGATCCACTaGCCTCTGAGCCTTTCCTGG +
Preference number: 2 (lower is better)
Translates to: ALQRTHELNRTMYVLGKGLSLIH*PLSLSW
Trigger: CCAGGAAAGGCTCAGAGGCCAGTGGATCAAGCTGAG...TCCTTTGCCCAGAACATACATGGTTCTGTTTAGCTCATGGGTTCTCTGAAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp CTTGCCTGCTCAGGCTCTCAGCTTTATAGGATGTGCTTTCTGCCTCTCACAGTCTACTTAACCCAGGATTaGAGAGGTAGCCTTGACTGT +
Preference number: 2 (lower is better)
Translates to: LACSGSQLYRMCFLPLTVYLTQD*RGSLDC
Trigger: ACAGTCAAGGCTACCTCTTCAATCCTGGGTTAAGTA...GACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGAGCCTGAGCAGGCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp GCAACCCCAAATCTGCAAGTTGTAGATGAGCTCACTACTCTCCTCCCCAGGAACGATGGCAGCCTCAGATaGCTTCCAAAAACAAACAAG +
Preference number: 2 (lower is better)
Translates to: ATPNLQVVDELTTLLPRNDGSLR*LPKTNK
Trigger: CTTGTTTGTTTTTGGAAGTCATCTGAGGCTGCCATC...GTTCCTGGGGAGGAGAGTAGTGAGCTCATCTACAACTTGCAGATTTGGGGTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp GTAGATGAGCTCACTACTCTCCTCCCCAGGAACTTGCCTGCTCAGGCTCTCAGCCTCCTCTACTATCCTTaGTTCTGCAAAATAACCAAT +
Preference number: 2 (lower is better)
Translates to: VDELTTLLPRNLPAQALSLLYYP*FCKITN
Trigger: ATTGGTTATTTTGCAGAATCAAGGATAGTAGAGGAG...GCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp ACTTTTTCTGAGTTCATCCTAGAGGTCTGCATCTCAGTGAAGCAAAGAGTGCTGCTCACTCTTCTTCCCTaGCTTCTCAGGCTGCAGAGC +
Preference number: 2 (lower is better)
Translates to: TFSEFILEVCISVKQRVLLTLLP*LLRLQS
Trigger: GCTCTGCAGCCTGAGAAGTCAGGGAAGAAGAGTGAG...CAGCACTCTTTGCTTCACTGAGATGCAGACCTCTAGGATGAACTCAGAAAAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp CAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGATGCACTCAAGATCCTaGGAGTGCCCAAAGATGAAG +
Preference number: 2 (lower is better)
Translates to: QLLHRHVRERSGERPNLQMHSRS*ECPKMK
Trigger: CTTCATCTTTGGGCACTCGCAGGATCTTGAGTGCAT...CTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp TGGTGGAAGAGAGGAAGGGTCCCCAACAAGGTTACTCAGGGCATTAACTTGGGGTTAGAGAGATGGGGTTaGAAAGAGTTACTTTCCCGT +
Preference number: 2 (lower is better)
Translates to: WWKRGRVPNKVTQGINLGLERWG*KELLSR
Trigger: ACGGGAAAGTAACTCTTTCCAACCCCATCTCTCTAA...CCCCAAGTTAATGCCCTGAGTAACCTTGTTGGGGACCCTTCCTCTCTTCCACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CTCTTGACCCAGAGACAGCTGAATTACTCCATGGAAGGGCAAGGCAGGGGTACTTGGAGACTGTCACTGTaGAGAGGAAATCAAAGATGT +
Preference number: 2 (lower is better)
Translates to: LLTQRQLNYSMEGQGRGTWRLSL*RGNQRC
Trigger: ACATCTTTGATTTCCTCTCCACAGTGACAGTCTCCA...AGTACCCCTGCCTTGCCCTTCCATGGAGTAATTCAGCTGTCTCTGGGTCAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp TTCTCAGGCTGCAGAGCTTCTCCCTTTGCGCTCATTATCCTCGCTGTGATGAGGATGAGTGGCTTTGTTTaGACTTTTGTTGGATGGGCT +
Preference number: 2 (lower is better)
Translates to: FSGCRASPFALIILAVMRMSGFV*TFVGWA
Trigger: AGCCCATCCAACAAAAGTCCAAACAAAGCCACTCAT...CCTCATCACAGCGAGGATAATGAGCGCAAAGGGAGAAGCTCTGCAGCCTGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp GAGAAGCCTTTCCTACATGCACTCAAGATCCTGCGAGTGCCCAAAGATGAAGAGCCCTTTCTCTCTATCTaGAGGGTCTTTCCCCTAATT +
Preference number: 2 (lower is better)
Translates to: EKPFLHALKILRVPKDEEPFLSI*RVFPLI
Trigger: AATTAGGGGAAAGACCCTTCAGATAGAGAGAAAGGG...CTCTTCATCTTTGGGCACTCGCAGGATCTTGAGTGCATGTAGGAAAGGCTTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp CAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGATCTCAAGCATTATTaGGCCACATCCTTCCTTGGT +
Preference number: 2 (lower is better)
Translates to: QLLHRHVRERSGERPNLQDLKHY*ATSFLG
Trigger: ACCAAGGAAGGATGTGGCTCAATAATGCTTGAGATC...CTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp GCTCTTCAGAGAACCCATGAGCTAAACAGAACCATGTATGTTCTGGGCAAAGGAGACTGTTGGGAAGTATaGAGCAGCATCTTCCTGACC +
Preference number: 2 (lower is better)
Translates to: ALQRTHELNRTMYVLGKGDCWEV*SSIFLT
Trigger: GGTCAGGAAGATGCTGCTGCATACTTCCCAACAGTC...TCCTTTGCCCAGAACATACATGGTTCTGTTTAGCTCATGGGTTCTCTGAAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp GTAGATGAGCTCACTACTCTCCTCCCCAGGAACTTGCCTGCTCAGGCTCTCAGCAGTGAGCATTTTATGTaGTTGCTGAATACACATGTT +
Preference number: 2 (lower is better)
Translates to: VDELTTLLPRNLPAQALSSEHFM*LLNTHV
Trigger: AACATGTGTATTCAGCAAGCACATAAAATGCTCACT...GCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp ATCTCAGTGAAGCAAAGAGTGCTGAAGCCAATGAGATTGGAAGGGAAGTTCAGACATTTTGAATGCTGGTaGTGGTGGTCAGGGGACACC +
Preference number: 2 (lower is better)
Translates to: ISVKQRVLKPMRLEGKFRHFECW*WWSGDT
Trigger: GGTGTCCCCTGACCACCAGCACCAGCATTCAAAATG...TCTGAACTTCCCTTCCAATCTCATTGGCTTCAGCACTCTTTGCTTCACTGAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp GCCTTTCTAAACTTGTTGTATTTGTGCATGTGGGGGACAGGACACTGTACTGATTGTGGAGACAGACACTaGCAGGTTCCTCTACAGACC +
Preference number: 2 (lower is better)
Translates to: AFLNLLYLCMWGTGHCTDCGDRH*QVPLQT
Trigger: GGTCTGTAGAGGAACCTGGCAGTGTCTGTCTCCACA...ATCAGTACAGTGTCCTGTCCCCCACATGCACAAATACAACAAGTTTAGAAAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp AGACTTCCAGGATGGTCTCCATTACCCTGTTGGTCTTCTCTACTTTCTTCTAGGGGTAAGAGTCTGGCATaGTTTCTAGGACTGTTGGGA +
Preference number: 2 (lower is better)
Translates to: RLPGWSPLPCWSSLLSSRGKSLA*FLGLLG
Trigger: TCCCAACAGTCCTAGAAATCATGCCAGACTCTTACC...CCTAGAAGAAAGTAGAGAAGACCAACAGGGTAATGGAGACCATCCTGGAAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp TCTCAGCTTTATAGGATGTGCTTTCTGCCTCTCACAGTCCCTGGGACACCTGCCTGGCTCCATATCTTTTaGCATCTGGAGCATTTAATA +
Preference number: 2 (lower is better)
Translates to: SQLYRMCFLPLTVPGTPAWLHIF*HLEHLI
Trigger: TATTAAATGCTCCAGATGTCAAAAGATATGGAGCCA...GGCAGGTGTCCCAGGGACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp GCCTTTCTAAACTTGTTGTATTTGTGCATGTGGGGGACAGGACACTGTACTGATATTGGGCTTGGATGCTaGTCCCTTTGGCCTGTTTCT +
Preference number: 2 (lower is better)
Translates to: AFLNLLYLCMWGTGHCTDIGLGC*SLWPVS
Trigger: AGAAACAGGCCAAAGGGATCAGCATCCAAGCCCAAT...ATCAGTACAGTGTCCTGTCCCCCACATGCACAAATACAACAAGTTTAGAAAGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp ATCTCAGTGAAGCAAAGAGTGCTGAAGCCAATGAGATTGGAAGGGAAGTTCAGACCTCTTCCAGGAAGCTaGAGGGCAGAGCTCAAAATA +
Preference number: 2 (lower is better)
Translates to: ISVKQRVLKPMRLEGKFRPLPGS*RAELKI
Trigger: TATTTTGAGCTCTGCCCTTCAGCTTCCTGGAAGAGG...TCTGAACTTCCCTTCCAATCTCATTGGCTTCAGCACTCTTTGCTTCACTGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp CTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGTTACAATTAAGCACATaGTATTTGAAAGATGGCAGC +
Preference number: 2 (lower is better)
Translates to: LHRHVRERSGERPNLQARLQLST*YLKDGS
Trigger: GCTGCCATCTTTCAAATAGCATGTGCTTAATTGTAA...CCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp CTAACTCTCCTCTTCCAGGAAGCTGAAGGGCAGAGCTCAAAATATTCCTGGTCATATAACCTGATTTCCTaGATCTGGAGAACCAGGAGG +
Preference number: 2 (lower is better)
Translates to: LTLLFQEAEGQSSKYSWSYNLIS*IWRTRR
Trigger: CCTCCTGGTTCTCCAGATGCAGGAAATCAGGTTATA...TGACCAGGAATATTTTGAGCTCTGCCCTTCAGCTTCCTGGAAGAGGAGAGTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp GAGAAGCCTTTCCTACATGCACTCAAGATCCTGCGAGTGCCCAAAGATGAAGAGTTAGAGAGATGGGGTTaGAAAGAGTTACTTTCCCGT +
Preference number: 2 (lower is better)
Translates to: EKPFLHALKILRVPKDEELERWG*KELLSR
Trigger: ACGGGAAAGTAACTCTTTCCAACCCCATCTCTCTAA...CTCTTCATCTTTGGGCACTCGCAGGATCTTGAGTGCATGTAGGAAAGGCTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGATGAGTGGCTTTGTTTaGACTTTTGTTGGATGGGCT +
Preference number: 2 (lower is better)
Translates to: QLLHRHVRERSGERPNLQMSGFV*TFVGWA
Trigger: AGCCCATCCAACAAAAGTCCAAACAAAGCCACTCAT...CTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp ATCTCAGTGAAGCAAAGAGTGCTGAAGCCAATGAGATTGGAAGGGAAGTTCAGAGCAGCACAATGTCTCTaGTCCTCACTCTTCTTCCCT +
Preference number: 2 (lower is better)
Translates to: ISVKQRVLKPMRLEGKFRAAQCL*SSLFFP
Trigger: AGGGAAGAAGAGTGAGGACCAGAGACATTGTGCTGC...TCTGAACTTCCCTTCCAATCTCATTGGCTTCAGCACTCTTTGCTTCACTGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp AGACTTCCAGGATGGTCTCCATTACCCTGTTGGTCTTCTCTACTTTCTTCTAGGCCTCTGAGCCTTTCCTaGCAGATGTTCACTGTTCAT +
Preference number: 2 (lower is better)
Translates to: RLPGWSPLPCWSSLLSSRPLSLS*QMFTVH
Trigger: ATGAACAGTGAACATCTGCCAGGAAAGGCTCAGAGG...CCTAGAAGAAAGTAGAGAAGACCAACAGGGTAATGGAGACCATCCTGGAAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp TCTTCACTGAGATTGGGCTTGGATGCTGATCCCTTTGGCCTGTTTCTTATCTCGTCTTCAGAGAACCCATaGGCTAAACAGAACCATGTA +
Preference number: 2 (lower is better)
Translates to: SSLRLGLDADPFGLFLISSSENP*AKQNHV
Trigger: TACATGGTTCTGTTTAGCTCATGGGTTCTCTGAAGA...CGAGATAAGAAACAGGCCAAAGGGATCAGCATCCAAGCCCAATCTCAGTGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp TTCTGGGCAAAGGACACAGTCATCCTGAGCTCTGGAGACTGTCACTGTGGAGAGCCTTTTATTGTAGTCTaGGTTCATGAAGAATGTGAT +
Preference number: 2 (lower is better)
Translates to: FWAKDTVILSSGDCHCGEPFIVV*VHEECD
Trigger: ATCACATTCTTCATGAACCCAGACTACAATAAAAGG...CTCTCCACAGTGACAGTCTCCAGAGCTCAGGATGACTGTGTCCTTTGCCCAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 90 bp TTAGTCCACAATGTCATCTTTACTCTAGGGTTTAGAGAGATGGGGTaGGAAAGAGTTACTTTCCCGTGGCCCCTAAGACTGTATGTAGAG +
Preference number: 2 (lower is better)
Translates to: LVHNVIFTLGFREMG*ERVTFPWPLRLYVE
Trigger: CTCTACATACAGTCTTAGGGGCCACGGGAAAGTAACTCTTTCCAACCCCATCTCTCTAAACCCTAGAGTAAAGATGACATTGTGGACTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp CACCAAGACTTCCTTGCTTCATTTTCTATGCAGAGTCTAGGTCAAGCATCATATATAGGATGTGCTTTCTaGCTCTCACAGTCCCTGGGA +
Preference number: 2 (lower is better)
Translates to: HQDFLASFSMQSLGQASYIGCAF*LSQSLG
Trigger: TCCCAGGGACTGTGAGAGGCAGAAAGCACATCCTAT...ATATGATGCTTGACCTAGACTCTGCATAGAAAATGAAGCAAGGAAGTCTTGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp GCCTTTCTAAACTTGTTGTATTTGTGCATGTGGGGGACAGGACACTGTACTGATCAGCTTTATAGGATGTaGTTTCTGCCTCTCACAGTC +
Preference number: 2 (lower is better)
Translates to: AFLNLLYLCMWGTGHCTDQLYRM*FLPLTV
Trigger: GACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTG...ATCAGTACAGTGTCCTGTCCCCCACATGCACAAATACAACAAGTTTAGAAAGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp TATCACAGTGCTCCCTCATCCCTCCTTAGCTCAATGTCAATAATGGTGGAAGAGTGGAGACTGTCACTGTaGAGAGGAAATCAAAGATGT +
Preference number: 2 (lower is better)
Translates to: YHSAPSSLLSSMSIMVEEWRLSL*RGNQRC
Trigger: ACATCTTTGATTTCCTCTCCACAGTGACAGTCTCCA...CTCTTCCACCATTATTGACATTGAGCTAAGGAGGGATGAGGGAGCACTGTGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp CAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGGTCTTAGAAATGAGTaGCTTTGTTTGGACTTTTGT +
Preference number: 2 (lower is better)
Translates to: QLLHRHVRERSGERPNLQGLRNE*LCLDFC
Trigger: ACAAAAGTCCAAACAAAGCCACTCATTTCTAAGACC...CTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp ATACACATGTTAGCTTGTTCAACTGTTCTAGCGTTAGTCCACAATGTCATCTTTCATCTTCCTGACCTCTaGCCTGGGGCATACTTAACC +
Preference number: 2 (lower is better)
Translates to: IHMLACSTVLALVHNVIFHLPDL*PGAYLT
Trigger: GGTTAAGTATGCCCCAGGTCAGAGGTCAGGAAGATG...AAAGATGACATTGTGGACTAACGCTAGAACAGTTGAACAAGCTAACATGTGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp AGACTTCCAGGATGGTCTCCATTACCCTGTTGGTCTTCTCTACTTTCTTCTAGGCAGTATCTGTTTCAGTaGGCATTTTATGTGCTTGCT +
Preference number: 2 (lower is better)
Translates to: RLPGWSPLPCWSSLLSSRQYLFQ*AFYVLA
Trigger: AGCAAGCACATAAAATGCTCACTGAAACAGATACTG...CCTAGAAGAAAGTAGAGAAGACCAACAGGGTAATGGAGACCATCCTGGAAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp ACTTTTTCTGAGTTCATCCTAGAGGTCTGCATCTCAGTGAAGCAAAGAGTGCTGATGCTATTTGAAAGATaGCAGCCTCAGATGACTTCC +
Preference number: 2 (lower is better)
Translates to: TFSEFILEVCISVKQRVLMLFER*QPQMTS
Trigger: GGAAGTCATCTGAGGCTGCCATCTTTCAAATAGCAT...CAGCACTCTTTGCTTCACTGAGATGCAGACCTCTAGGATGAACTCAGAAAAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp AACTTGTTGTATTTGTGCATGTGGGGGACAGGACACTGTACTGATAGATACAATCTCACCCTCCCCGCTTaGAACTATCACTTATTTGTC +
Preference number: 2 (lower is better)
Translates to: NLLYLCMWGTGHCTDRYNLTLPA*NYHLFV
Trigger: GACAAATAAGTGATAGTTCCAAGCGGGGAGGGTGAG...ATTGTATCTATCAGTACAGTGTCCTGTCCCCCACATGCACAAATACAACAAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp AACTTGTTGTATTTGTGCATGTGGGGGACAGGACACTGTACTGATAGATACAATGATGGCAGCCTCAGATaGCTTCCAAAAACAAACAAG +
Preference number: 2 (lower is better)
Translates to: NLLYLCMWGTGHCTDRYNDGSLR*LPKTNK
Trigger: CTTGTTTGTTTTTGGAAGTCATCTGAGGCTGCCATC...ATTGTATCTATCAGTACAGTGTCCTGTCCCCCACATGCACAAATACAACAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp TATCACAGTGCTCCCTCATCCCTCCTTAGCTCAATGTCAATAATGGTGGAAGAGTGGCTCCATATCTTTTaGCATCTGGAGCATTTAATA +
Preference number: 2 (lower is better)
Translates to: YHSAPSSLLSSMSIMVEEWLHIF*HLEHLI
Trigger: TATTAAATGCTCCAGATGTCAAAAGATATGGAGCCA...CTCTTCCACCATTATTGACATTGAGCTAAGGAGGGATGAGGGAGCACTGTGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR GCA 90 bp GACACAGTCATCCTGAGCTCTGGAGACTGTCACTGTGGAGAGGAAATCAAAGATAGTGAGCATTTTATGTaGTTGCTGAATACACATGTT +
Preference number: 2 (lower is better)
Translates to: DTVILSSGDCHCGEEIKDSEHFM*LLNTHV
Trigger: AACATGTGTATTCAGCAAGCACATAAAATGCTCACT...ATCTTTGATTTCCTCTCCACAGTGACAGTCTCCAGAGCTCAGGATGACTGTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp ACAATTAAGCACATGCTATTTGAAAGATGGCAGCCTCAGATGACTTCCAAAAACTACTTAACCCAGGATTaGAGAGGTAGCCTTGACTGT +
Preference number: 2 (lower is better)
Translates to: TIKHMLFERWQPQMTSKNYLTQD*RGSLDC
Trigger: ACAGTCAAGGCTACCTCTTCAATCCTGGGTTAAGTA...GTTTTTGGAAGTCATCTGAGGCTGCCATCTTTCAAATAGCATGTGCTTAATTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp GCCTTTCTAAACTTGTTGTATTTGTGCATGTGGGGGACAGGACACTGTACTGATCTCCTCTACTATCCTTaGTTCTGCAAAATAACCAAT +
Preference number: 2 (lower is better)
Translates to: AFLNLLYLCMWGTGHCTDLLYYP*FCKITN
Trigger: ATTGGTTATTTTGCAGAATCAAGGATAGTAGAGGAG...ATCAGTACAGTGTCCTGTCCCCCACATGCACAAATACAACAAGTTTAGAAAGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CCA 90 bp GTCATCTCATCTTACACTAAGGGACATAGAGCAAGGAGCAGAATAAGTCACTGGCCTTTTATTGTAGTCTaGGTTCATGAAGAATGTGAT +
Preference number: 2 (lower is better)
Translates to: VISSYTKGHRARSRISHWPFIVV*VHEECD
Trigger: ATCACATTCTTCATGAACCCAGACTACAATAAAAGG...CCAGTGACTTATTCTGCTCCTTGCTCTATGTCCCTTAGTGTAAGATGAGATGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR TCA 90 bp ACAATTAAGCACATGCTATTTGAAAGATGGCAGCCTCAGATGACTTCCAAAAACCAGTATCTGTTTCAGTaGGCATTTTATGTGCTTGCT +
Preference number: 2 (lower is better)
Translates to: TIKHMLFERWQPQMTSKNQYLFQ*AFYVLA
Trigger: AGCAAGCACATAAAATGCTCACTGAAACAGATACTG...GTTTTTGGAAGTCATCTGAGGCTGCCATCTTTCAAATAGCATGTGCTTAATTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 90 bp ATTAAGGCTCATATCAGTATCTGTTTCAGTGAGCATTTTATGTGCTaGCTGAATACACATGTTAGCTTGTTCAACTGTTCTAGCGTTAGT +
Preference number: 2 (lower is better)
Translates to: IKAHISICFSEHFMC*LNTHVSLFNCSSVS
Trigger: ACTAACGCTAGAACAGTTGAACAAGCTAACATGTGTATTCAGCAAGCACATAAAATGCTCACTGAAACAGATACTGATATGAGCCTTAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp GGCATAGGGGCCCCAGCCAAGCAGCAGCATTCTGCCTaGAAGAGTAGTATTCACCGGGAGATGGCCACTCCT +
Preference number: 3 (lower is better)
Translates to: GIGAPAKQQHSA*KSSIHREMATP
Trigger: AGGAGTGGCCATCTCCCGGTGAATACTACTCTTCCAGGCAGAATGCTGCTGCTTGGCTGGGGCCCCTATGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
3UTR-3UTR CAA 90 bp ACTCCATGGAAGGGCAAGGCAGGGGTACTAGAGGTGAATGGGAAGCAGGGCAGAGACTCAACAGGGATCTaGGGGCTGGTGGGTAAGAGT +
Preference number: 3 (lower is better)
Translates to: TPWKGKAGVLEVNGKQGRDSTGI*GLVGKS
Trigger: ACTCTTACCCACCAGCCCCAAGATCCCTGTTGAGTC...TCTGCCCTGCTTCCCATTCACCTCTAGTACCCCTGCCTTGCCCTTCCATGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp CCTGCTCAGGCTCTCAGCTTTATAGGATGTGCTTTCTaGCTCTCACAGTCCCTGGGACACCTGCCCCTTCCA +
Preference number: 3 (lower is better)
Translates to: PAQALSFIGCAF*LSQSLGHLPLP
Trigger: TGGAAGGGGCAGGTGTCCCAGGGACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGAGCCTGAGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp AGTGCTGCTTGCAGTGTTGTTCTGGGGCCTGGTGCTTaGCTGGTTCCTGCAGTTGGCCTGATTCCTGTTGAC +
Preference number: 3 (lower is better)
Translates to: SAACSVVLGPGA*LVPAVGLIPVD
Trigger: GTCAACAGGAATCAGGCCAACTGCAGGAACCAGGCAAGCACCAGGCCCCAGAACAACACTGCAAGCAGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp GTGACCGGGGCTTTAGTGTCCCCAACTCGAGGCACGTaGGCTCTTCAGAGAACCCATGAGCTAAACAGAACC +
Preference number: 3 (lower is better)
Translates to: VTGALVSPTRGT*ALQRTHELNRT
Trigger: GGTTCTGTTTAGCTCATGGGTTCTCTGAAGAGCCCACGTGCCTCGAGTTGGGGACACTAAAGCCCCGGTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp AGAAGGAAGTGCTGCTTGCAGTGTTGTTCTGGGGCCTaGTGCTTGCCTGGTTCCTGCAGTTGGCCTGATTCC +
Preference number: 3 (lower is better)
Translates to: RRKCCLQCCSGA*CLPGSCSWPDS
Trigger: GGAATCAGGCCAACTGCAGGAACCAGGCAAGCACCAGGCCCCAGAACAACACTGCAAGCAGCACTTCCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp CGAGGATCATCAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCGTGCTGCTTGCAGTGTaGTTCTGGGGCCTGGTGCTT +
Preference number: 3 (lower is better)
Translates to: RGSSIASQACEGEKWGETVLLAV*FWGLVL
Trigger: AAGCACCAGGCCCCAGAACAACACTGCAAGCAGCAC...GGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTGATGATCCTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp CTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGATTGTGGGCATGGTTTaGGCGATGAGAGCAGGCACC +
Preference number: 3 (lower is better)
Translates to: LHRHVRERSGERPNLQARIVGMV*AMRAGT
Trigger: GGTGCCTGCTCTCATCGCCAAAACCATGCCCACAAT...CCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR TCA 72 bp TCAGAGCACATGCTCGCTCTTATGTTCAGCTGTCCCTaGCATCTCAGTATGGCCCAGGATGGGGAGGGGTGT +
Preference number: 3 (lower is better)
Translates to: SEHMLALMFSCP*HLSMAQDGEGC
Trigger: ACACCCCTCCCCATCCTGGGCCATACTGAGATGTCAGGGACAGCTGAACATAAGAGCGAGCATGTGCTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR GCA 72 bp GAACTTGCCTGCTCAGGCTCTCAGCTTTATAGGATGTaGTTTCTGCCTCTCACAGTCCCTGGGACACCTGCC +
Preference number: 3 (lower is better)
Translates to: ELACSGSQLYRM*FLPLTVPGTPA
Trigger: GGCAGGTGTCCCAGGGACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGAGCCTGAGCAGGCAAGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp TCCATGGAAGGGCAAGGCAGGGGTACTAGAGGTGAATaGGAAGCAGGGCAGAGGAGAAGCCTTTCCTACATG +
Preference number: 3 (lower is better)
Translates to: SMEGQGRGTRGE*EAGQRRSLSYM
Trigger: CATGTAGGAAAGGCTTCTCCTCTGCCCTGCTTCCCATTCACCTCTAGTACCCCTGCCTTGCCCTTCCATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp ACTCCATGGAAGGGCAAGGCAGGGGTACTAGAGGTGAATGGGAAGCAGGGCAGAATGTCTTCACTGAGATaGGGCTTGGATGCTGATCCC +
Preference number: 3 (lower is better)
Translates to: TPWKGKAGVLEVNGKQGRMSSLR*GLDADP
Trigger: GGGATCAGCATCCAAGCCCAATCTCAGTGAAGACAT...TCTGCCCTGCTTCCCATTCACCTCTAGTACCCCTGCCTTGCCCTTCCATGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp TTCTCAGGCTGCAGAGCTTCTCCCTTTGCGCTCATTATCCTCGCTGTGATGAGGAGAAGGAAGTGCTGCTaGCAGTGTTGTTCTGGGGCC +
Preference number: 3 (lower is better)
Translates to: FSGCRASPFALIILAVMRRRKCC*QCCSGA
Trigger: GGCCCCAGAACAACACTGCAAGCAGCACTTCCTTCT...CCTCATCACAGCGAGGATAATGAGCGCAAAGGGAGAAGCTCTGCAGCCTGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp GAACCAGGAGGCAACCCCAAATCTGCAAGTTGTAGATaGGCTCACTACTCTCCTCCCCAGGAACTTGCCTGC +
Preference number: 3 (lower is better)
Translates to: EPGGNPKSASCR*AHYSPPQELAC
Trigger: GCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTACAACTTGCAGATTTGGGGTTGCCTCCTGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp ACTCCATGGAAGGGCAAGGCAGGGGTACTAGAGGTGAATGGGAAGCAGGGCAGAAACCAAGGGTTCATTTaGAATGCTGGTGCTGGTGGT +
Preference number: 3 (lower is better)
Translates to: TPWKGKAGVLEVNGKQGRNQGFI*NAGAGG
Trigger: ACCACCAGCACCAGCATTCAAAATGAACCCTTGGTT...TCTGCCCTGCTTCCCATTCACCTCTAGTACCCCTGCCTTGCCCTTCCATGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp CTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGCTTCCTTGGTCTCTCTaGACCCAGAGACAGCTGAAT +
Preference number: 3 (lower is better)
Translates to: LHRHVRERSGERPNLQARLPWSL*TQRQLN
Trigger: ATTCAGCTGTCTCTGGGTCAAGAGAGACCAAGGAAG...CCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp TTCTCAGGCTGCAGAGCTTCTCCCTTTGCGCTCATTATCCTCGCTGTGATGAGGTCAGGACATGACTTTTaGGTCTCACCCTCCCCGCTT +
Preference number: 3 (lower is better)
Translates to: FSGCRASPFALIILAVMRSGHDF*VSPSPL
Trigger: AAGCGGGGAGGGTGAGACCAAAAAGTCATGTCCTGA...CCTCATCACAGCGAGGATAATGAGCGCAAAGGGAGAAGCTCTGCAGCCTGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR TCA 72 bp CCCAACTCGAGGCACGTGGGCTCTTCAGAGAACCCATaGGCTAAACAGAACCATGTATGTTCTGGGCAAAGG +
Preference number: 3 (lower is better)
Translates to: PNSRHVGSSENP*AKQNHVCSGQR
Trigger: CCTTTGCCCAGAACATACATGGTTCTGTTTAGCTCATGGGTTCTCTGAAGAGCCCACGTGCCTCGAGTTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp TCCAGAGACTTGGACAAAGCTGATACCTCCCACTCTTaGTACTTGTCTTCTGGCTCCGCCTGTCTTCAACCC +
Preference number: 3 (lower is better)
Translates to: SRDLDKADTSHS*YLSSGSACLQP
Trigger: GGGTTGAAGACAGGCGGAGCCAGAAGACAAGTAGCAAGAGTGGGAGGTATCAGCTTTGTCCAAGTCTCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp CTGGGTGTCAATTTCAGCCCCAGGTCTCAGAGCACATaGTCGCTCTTATGTTCAGCTGTCCCTGACATCTCA +
Preference number: 3 (lower is better)
Translates to: LGVNFSPRSQST*SLLCSAVPDIS
Trigger: TGAGATGTCAGGGACAGCTGAACATAAGAGCGAGCATGTGCTCTGAGACCTGGGGCTGAAATTGACACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR CCA 72 bp AGCATTCTGCCTGGAAGAGTAGTATTCACCGGGAGATaGCCACTCCTGGAGAATTTCTGCTCCATGAACCGG +
Preference number: 3 (lower is better)
Translates to: SILPGRVVFTGR*PLLENFCSMNR
Trigger: CCGGTTCATGGAGCAGAAATTCTCCAGGAGTGGCCATCTCCCGGTGAATACTACTCTTCCAGGCAGAATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
3UTR-3UTR CAA 90 bp GACACAGTCATCCTGAGCTCTGGAGACTGTCACTGTGGAGAGGAAATCAAAGATGACTCAACAGGGATCTaGGGGCTGGTGGGTAAGAGT +
Preference number: 3 (lower is better)
Translates to: DTVILSSGDCHCGEEIKDDSTGI*GLVGKS
Trigger: ACTCTTACCCACCAGCCCCAAGATCCCTGTTGAGTC...ATCTTTGATTTCCTCTCCACAGTGACAGTCTCCAGAGCTCAGGATGACTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp CTCTTGACCCAGAGACAGCTGAATTACTCCATGGAAGGGCAAGGCAGGGGTACTGTCCTTCTTGCTTTTTaGTGGAGACAGACACTGCCA +
Preference number: 3 (lower is better)
Translates to: LLTQRQLNYSMEGQGRGTVLLAF*WRQTLP
Trigger: TGGCAGTGTCTGTCTCCACAAAAAAGCAAGAAGGAC...AGTACCCCTGCCTTGCCCTTCCATGGAGTAATTCAGCTGTCTCTGGGTCAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR TCA 72 bp TGGTGTTACACTCCTTGGGTCCTTGGGTTCTGTAGCTaGGACTGCAGCACAATGTCTCTGGTCCTCACTCTT +
Preference number: 3 (lower is better)
Translates to: WCYTPWVLGFCS*DCSTMSLVLTL
Trigger: AAGAGTGAGGACCAGAGACATTGTGCTGCAGTCTCAGCTACAGAACCCAAGGACCCAAGGAGTGTAACACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp GGGACACCTGCCCCTTCCACCATTAGACTTCCAGGATaGTCTCCATTACCCTGTTGGTCTTCTCTACTTTCT +
Preference number: 3 (lower is better)
Translates to: GTPAPSTIRLPG*SPLPCWSSLLS
Trigger: AGAAAGTAGAGAAGACCAACAGGGTAATGGAGACCATCCTGGAAGTCTAATGGTGGAAGGGGCAGGTGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp TTCCAGGAAGCTGAAGGGCAGAGCTCAAAATATTCCTaGTCACAGCCTGGCCAATCTGCCTTCTTCCCATGT +
Preference number: 3 (lower is better)
Translates to: FQEAEGQSSKYS*SQPGQSAFFPC
Trigger: ACATGGGAAGAAGGCAGATTGGCCAGGCTGTGACCAGGAATATTTTGAGCTCTGCCCTTCAGCTTCCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp TCGCTCTTATGTTCAGCTGTCCCTGACATCTCAGTATaGCCCAGGATGGGGAGGGGTGTATGTGGAACAAAA +
Preference number: 3 (lower is better)
Translates to: SLLCSAVPDISV*PRMGRGVCGTK
Trigger: TTTTGTTCCACATACACCCCTCCCCATCCTGGGCCATACTGAGATGTCAGGGACAGCTGAACATAAGAGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp GCAAAGGACACAGTCATCCTGAGCTCTGGAGACTGTCACTGTGGAGAGGAAATCAACCAAGGGTTCATTTaGAATGCTGGTGCTGGTGGT +
Preference number: 3 (lower is better)
Translates to: AKDTVILSSGDCHCGEEINQGFI*NAGAGG
Trigger: ACCACCAGCACCAGCATTCAAAATGAACCCTTGGTT...GATTTCCTCTCCACAGTGACAGTCTCCAGAGCTCAGGATGACTGTGTCCTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp CAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGATGTCTTCACTGAGATaGGGCTTGGATGCTGATCCC +
Preference number: 3 (lower is better)
Translates to: QLLHRHVRERSGERPNLQMSSLR*GLDADP
Trigger: GGGATCAGCATCCAAGCCCAATCTCAGTGAAGACAT...CTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp CTCTTGACCCAGAGACAGCTGAATTACTCCATGGAAGGGCAAGGCAGGGGTACTAATGAGTGGCTTTGTTaGGACTTTTGTTGGATGGGC +
Preference number: 3 (lower is better)
Translates to: LLTQRQLNYSMEGQGRGTNEWLC*DFCWMG
Trigger: GCCCATCCAACAAAAGTCCAAACAAAGCCACTCATT...AGTACCCCTGCCTTGCCCTTCCATGGAGTAATTCAGCTGTCTCTGGGTCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp TCTGGCTCCGCCTGTCTTCAACCCTTTCTCTCTATCTaGAGGGTCTTTCCCCTAATTTATCACAGTGCTCCC +
Preference number: 3 (lower is better)
Translates to: SGSACLQPFLSI*RVFPLIYHSAP
Trigger: GGGAGCACTGTGATAAATTAGGGGAAAGACCCTTCAGATAGAGAGAAAGGGTTGAAGACAGGCGGAGCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp GCCACTCCTGGAGAATTTCTGCTCCATGAACCGGTATaGAGTGTGTGTGATGAACAGGGGTACGAGGAAGTT +
Preference number: 3 (lower is better)
Translates to: ATPGEFLLHEPV*SVCDEQGYEEV
Trigger: AACTTCCTCGTACCCCTGTTCATCACACACACTTCATACCGGTTCATGGAGCAGAAATTCTCCAGGAGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
3UTR GCA 72 bp GCTTCGTCTGGGTTGTGTACATATAACCTGATTTCCTaGATCTGGAGAACCAGGAGGCAACCCCAAATCTGC +
Preference number: 3 (lower is better)
Translates to: ASSGLCTYNLIS*IWRTRRQPQIC
Trigger: GCAGATTTGGGGTTGCCTCCTGGTTCTCCAGATGCAGGAAATCAGGTTATATGTACACAACCCAGACGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp GTATTCACCGGGAGATGGCCACTCCTGGAGAATTTCTaGTCCATGAACCGGTATGAAGTGTGTGTGATGAAC +
Preference number: 3 (lower is better)
Translates to: VFTGRWPLLENF*SMNRYEVCVMN
Trigger: GTTCATCACACACACTTCATACCGGTTCATGGAGCAGAAATTCTCCAGGAGTGGCCATCTCCCGGTGAATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
3UTR GCA 72 bp GCAGGCACCTGTTGTGGTGGAAAAGTCCATGAAAGATaGTTTGAAGCCTCTACTTTTCTCCCAGTCCCACTC +
Preference number: 3 (lower is better)
Translates to: AGTCCGGKVHER*FEASTFLPVPL
Trigger: GAGTGGGACTGGGAGAAAAGTAGAGGCTTCAAAGCATCTTTCATGGACTTTTCCACCACAACAGGTGCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR CCA 72 bp AGTCTAGGTCAAGCATCATATGCGGGCCCTGGAGTGTaGCCAAGTGTCATCTTGTCTGTATATCACCTGGTT +
Preference number: 3 (lower is better)
Translates to: SLGQASYAGPGV*PSVILSVYHLV
Trigger: AACCAGGTGATATACAGACAAGATGACACTTGGCCACACTCCAGGGCCCGCATATGATGCTTGACCTAGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp CTTGCCTGCTCAGGCTCTCAGCTTTATAGGATGTGCTTTCTGCCTCTCACAGTCTTTAGAGAGATGGGGTaGGAAAGAGTTACTTTCCCG +
Preference number: 3 (lower is better)
Translates to: LACSGSQLYRMCFLPLTVFREMG*ERVTFP
Trigger: CGGGAAAGTAACTCTTTCCAACCCCATCTCTCTAAA...GACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGAGCCTGAGCAGGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp TCTTCACTGAGATTGGGCTTGGATGCTGATCCCTTTGGCCTGTTTCTTATCTCGACTGTGATCAGCCCCTaGAAGAGTTTCACTGGGTTC +
Preference number: 3 (lower is better)
Translates to: SSLRLGLDADPFGLFLISTVISP*KSFTGF
Trigger: GAACCCAGTGAAACTCTTCAAGGGGCTGATCACAGT...CGAGATAAGAAACAGGCCAAAGGGATCAGCATCCAAGCCCAATCTCAGTGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR TCA 72 bp AACCATGTATGTTCTGGGCAAAGGACACAGTCATCCTaGGCTCTGGAGACTGTCACTGTGGAGAGGAAATCA +
Preference number: 3 (lower is better)
Translates to: NHVCSGQRTQSS*ALETVTVERKS
Trigger: TGATTTCCTCTCCACAGTGACAGTCTCCAGAGCTCAGGATGACTGTGTCCTTTGCCCAGAACATACATGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp CATTGCCATGCACTGTGTGTGGCACATATTAGCTGTTaGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: HCHALCVAHISC*VCVCVCVCVCV
Trigger: CACACACACACACACACACACACACACACACACTCAACAGCTAATATGTGCCACACACAGTGCATGGCAATG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp TTCATTTTCTATGCAGAGTCTAGGTCAAGCATCATATaGGGGCCCTGGAGTGTGGCCAAGTGTCATCTTGTC +
Preference number: 3 (lower is better)
Translates to: FIFYAESRSSII*GPWSVAKCHLV
Trigger: GACAAGATGACACTTGGCCACACTCCAGGGCCCGCATATGATGCTTGACCTAGACTCTGCATAGAAAATGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp CCTGCTCCACCCATGTGTAAGCCACCAAGACTTCCTTaGTTCATTTTCTATGCAGAGTCTAGGTCAAGCATC +
Preference number: 3 (lower is better)
Translates to: PAPPMCKPPRLP*FIFYAESRSSI
Trigger: GATGCTTGACCTAGACTCTGCATAGAAAATGAAGCAAGGAAGTCTTGGTGGCTTACACATGGGTGGAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp TATGCAGAGTCTAGGTCAAGCATCATATGCGGGCCCTaGAGTGTGGCCAAGTGTCATCTTGTCTGTATATCA +
Preference number: 3 (lower is better)
Translates to: YAESRSSIICGP*SVAKCHLVCIS
Trigger: TGATATACAGACAAGATGACACTTGGCCACACTCCAGGGCCCGCATATGATGCTTGACCTAGACTCTGCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp TACAGGCCAGGAAATCTGCCTATAAAGGCAGATAAATaGGCCCTAGGGAGCTCCAGATATTTGGGAGCTGAT +
Preference number: 3 (lower is better)
Translates to: YRPGNLPIKADK*ALGSSRYLGAD
Trigger: ATCAGCTCCCAAATATCTGGAGCTCCCTAGGGCCCATTTATCTGCCTTTATAGGCAGATTTCCTGGCCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp TGGTGGAAGAGAGGAAGGGTCCCCAACAAGGTTACTCAGGGCATTAACTTGGGGGTGGCTCCATATCTTTaGACATCTGGAGCATTTAAT +
Preference number: 3 (lower is better)
Translates to: WWKRGRVPNKVTQGINLGVAPYL*TSGAFN
Trigger: ATTAAATGCTCCAGATGTCAAAAGATATGGAGCCAC...CCCCAAGTTAATGCCCTGAGTAACCTTGTTGGGGACCCTTCCTCTCTTCCACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp TTGGTCTCTCTTGACCCAGAGACAGCTGAATTACTCCATGGAAGGGCAAGGCAGGGCTATGACCTTTCATaGAACCTAGGATTTGAATTC +
Preference number: 3 (lower is better)
Translates to: LVSLDPETAELLHGRARQGYDLS*NLGFEF
Trigger: GAATTCAAATCCTAGGTTCAATGAAAGGTCATAGCC...CTGCCTTGCCCTTCCATGGAGTAATTCAGCTGTCTCTGGGTCAAGAGAGACCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp GCAACCCCAAATCTGCAAGTTGTAGATGAGCTCACTACTCTCCTCCCCAGGAACCTAACCTGCATGCTCTaGTCCAATTTGTATAGTCAA +
Preference number: 3 (lower is better)
Translates to: ATPNLQVVDELTTLLPRNLTCML*SNLYSQ
Trigger: TTGACTATACAAATTGGACAAGAGCATGCAGGTTAG...GTTCCTGGGGAGGAGAGTAGTGAGCTCATCTACAACTTGCAGATTTGGGGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp GCAACCCCAAATCTGCAAGTTGTAGATGAGCTCACTACTCTCCTCCCCAGGAACGTGGCTCCATATCTTTaGACATCTGGAGCATTTAAT +
Preference number: 3 (lower is better)
Translates to: ATPNLQVVDELTTLLPRNVAPYL*TSGAFN
Trigger: ATTAAATGCTCCAGATGTCAAAAGATATGGAGCCAC...GTTCCTGGGGAGGAGAGTAGTGAGCTCATCTACAACTTGCAGATTTGGGGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp CAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGTCCATGAAAGATGCTTaGAAGCCTCTACTTTTCTCC +
Preference number: 3 (lower is better)
Translates to: QLLHRHVRERSGERPNLQSMKDA*KPLLFS
Trigger: GGAGAAAAGTAGAGGCTTCAAAGCATCTTTCATGGA...CTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR TCA 72 bp TCTTATCTCGTGAGAATCCAGAGACTTGGACAAAGCTaGTACCTCCCACTCTTGCTACTTGTCTTCTGGCTC +
Preference number: 3 (lower is better)
Translates to: SYLVRIQRLGQS*YLPLLLLVFWL
Trigger: GAGCCAGAAGACAAGTAGCAAGAGTGGGAGGTATCAGCTTTGTCCAAGTCTCTGGATTCTCACGAGATAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp TTGGATGCTGATCCCTTTGGCCTGTTTCTTATCTCGTaGGAATCCAGAGACTTGGACAAAGCTGATACCTCC +
Preference number: 3 (lower is better)
Translates to: LDADPFGLFLIS*ESRDLDKADTS
Trigger: GGAGGTATCAGCTTTGTCCAAGTCTCTGGATTCTCACGAGATAAGAAACAGGCCAAAGGGATCAGCATCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp TCTTCCCATGTCTTCACTGAGATTGGGCTTGGATGCTaGTCCCTTTGGCCTGTTTCTTATCTCGTGAGAATC +
Preference number: 3 (lower is better)
Translates to: SSHVFTEIGLGC*SLWPVSYLVRI
Trigger: GATTCTCACGAGATAAGAAACAGGCCAAAGGGATCAGCATCCAAGCCCAATCTCAGTGAAGACATGGGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp CCAAGCCTATCCAAGTGCAGGGAATGGGTAGACTTCTaGTTGTTAATGAAGCTTAGGGACTGTACCAACGTC +
Preference number: 3 (lower is better)
Translates to: PSLSKCREWVDF*LLMKLRDCTNV
Trigger: GACGTTGGTACAGTCCCTAAGCTTCATTAACAATCAGAAGTCTACCCATTCCCTGCACTTGGATAGGCTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp GTTCCTGCAGTTGGCCTGATTCCTGTTGACTTTTTCTaGGTTCATCCTAGAGGTCTGCATCTCAGTGAAGCA +
Preference number: 3 (lower is better)
Translates to: VPAVGLIPVDFF*VHPRGLHLSEA
Trigger: TGCTTCACTGAGATGCAGACCTCTAGGATGAACTCAGAAAAAGTCAACAGGAATCAGGCCAACTGCAGGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp AGAAGCCTTTCCTACATGCACTCAAGATCCTGCGAGTaGCCAAAGATGAAGAGACACTCTAAAGTTCACAGG +
Preference number: 3 (lower is better)
Translates to: RSLSYMHSRSCE*PKMKRHSKVHR
Trigger: CCTGTGAACTTTAGAGTGTCTCTTCATCTTTGGGCACTCGCAGGATCTTGAGTGCATGTAGGAAAGGCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp TTTAGAGAGATGGGGTTGGAAAGAGTTACTTTCCCGTaGCCCCTAAGACTGTATGTAGAGGGCTATGACCTT +
Preference number: 3 (lower is better)
Translates to: FREMGLERVTFP*PLRLYVEGYDL
Trigger: AAGGTCATAGCCCTCTACATACAGTCTTAGGGGCCACGGGAAAGTAACTCTTTCCAACCCCATCTCTCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp TATGTTCTGGGCAAAGGACACAGTCATCCTGAGCTCTaGAGACTGTCACTGTGGAGAGGAAATCAAAGATGT +
Preference number: 3 (lower is better)
Translates to: YVLGKGHSHPEL*RLSLWRGNQRC
Trigger: ACATCTTTGATTTCCTCTCCACAGTGACAGTCTCCAGAGCTCAGGATGACTGTGTCCTTTGCCCAGAACATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp GATGGATCTCAAGCATTATTGAGCCACATCCTTCCTTaGTCTCTCTTGACCCAGAGACAGCTGAATTACTCC +
Preference number: 3 (lower is better)
Translates to: DGSQALLSHILP*SLLTQRQLNYS
Trigger: GGAGTAATTCAGCTGTCTCTGGGTCAAGAGAGACCAAGGAAGGATGTGGCTCAATAATGCTTGAGATCCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp TGGAACTATCACTTATTTGTCCTCAGCTTGATCCACTaGCCTCTGAGCCTTTCCTGGCAGATGTTCACTGTT +
Preference number: 3 (lower is better)
Translates to: WNYHLFVLSLIH*PLSLSWQMFTV
Trigger: AACAGTGAACATCTGCCAGGAAAGGCTCAGAGGCCAGTGGATCAAGCTGAGGACAAATAAGTGATAGTTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp ACAGACCATCTCCCTGTGCAACGCATAGTTGATGGCGTTGATTGTGGGCATGGTAATACACATGTTAGCTaGTTCAACTGTTCTAGCGTT +
Preference number: 3 (lower is better)
Translates to: TDHLPVQRIVDGVDCGHGNTHVS*FNCSSV
Trigger: AACGCTAGAACAGTTGAACAAGCTAACATGTGTATT...ACCATGCCCACAATCAACGCCATCAACTATGCGTTGCACAGGGAGATGGTCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp ATCTCAGTGAAGCAAAGAGTGCTGAAGCCAATGAGATTGGAAGGGAAGTTCAGAGGATCTCAAGCATTATaGAGCCACATCCTTCCTTGG +
Preference number: 3 (lower is better)
Translates to: ISVKQRVLKPMRLEGKFRGSQAL*SHILPW
Trigger: CCAAGGAAGGATGTGGCTCAATAATGCTTGAGATCC...TCTGAACTTCCCTTCCAATCTCATTGGCTTCAGCACTCTTTGCTTCACTGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp ACTTTTTCTGAGTTCATCCTAGAGGTCTGCATCTCAGTGAAGCAAAGAGTGCTGTCTCACCCTCCCCGCTaGGAACTATCACTTATTTGT +
Preference number: 3 (lower is better)
Translates to: TFSEFILEVCISVKQRVLSHPPR*ELSLIC
Trigger: ACAAATAAGTGATAGTTCCAAGCGGGGAGGGTGAGA...CAGCACTCTTTGCTTCACTGAGATGCAGACCTCTAGGATGAACTCAGAAAAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR CCA 72 bp ACCATTAGACTTCCAGGATGGTCTCCATTACCCTGTTaGTCTTCTCTACTTTCTTCTAGGACAGCAGATCTC +
Preference number: 3 (lower is better)
Translates to: TIRLPGWSPLPC*SSLLSSRTADL
Trigger: GAGATCTGCTGTCCTAGAAGAAAGTAGAGAAGACCAACAGGGTAATGGAGACCATCCTGGAAGTCTAATGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp ATCTCAGTGAAGCAAAGAGTGCTGAAGCCAATGAGATTGGAAGGGAAGTTCAGAAATGAGTGGCTTTGTTaGGACTTTTGTTGGATGGGC +
Preference number: 3 (lower is better)
Translates to: ISVKQRVLKPMRLEGKFRNEWLC*DFCWMG
Trigger: GCCCATCCAACAAAAGTCCAAACAAAGCCACTCATT...TCTGAACTTCCCTTCCAATCTCATTGGCTTCAGCACTCTTTGCTTCACTGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp ACTGTACTGATAGATACAATTGAGGGCACACATGAGTaGATGGAGGAAAGAAATCTAGCAAGCCCCGAGGAT +
Preference number: 3 (lower is better)
Translates to: TVLIDTIEGTHE*MEERNLASPED
Trigger: ATCCTCGGGGCTTGCTAGATTTCTTTCCTCCATTCACTCATGTGTGCCCTCAATTGTATCTATCAGTACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp TTCCTGTTGACTTTTTCTGAGTTCATCCTAGAGGTCTaGATCTCAGTGAAGCAAAGAGTGCTGAAGCCAATG +
Preference number: 3 (lower is better)
Translates to: FLLTFSEFILEV*ISVKQRVLKPM
Trigger: CATTGGCTTCAGCACTCTTTGCTTCACTGAGATGCAGACCTCTAGGATGAACTCAGAAAAAGTCAACAGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR GCA 72 bp CAAAAGACAGAGATAGGATTACAAGCACTAAGTGGATaGTGGCATACAAAGAAGGAAGTGCTGCTTGCAGTG +
Preference number: 3 (lower is better)
Translates to: QKTEIGLQALSG*WHTKKEVLLAV
Trigger: CACTGCAAGCAGCACTTCCTTCTTTGTATGCCAGCATCCACTTAGTGCTTGTAATCCTATCTCTGTCTTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp TATCACAGTGCTCCCTCATCCCTCCTTAGCTCAATGTCAATAATGGTGGAAGAGGGCTATGACCTTTCATaGAACCTAGGATTTGAATTC +
Preference number: 3 (lower is better)
Translates to: YHSAPSSLLSSMSIMVEEGYDLS*NLGFEF
Trigger: GAATTCAAATCCTAGGTTCAATGAAAGGTCATAGCC...CTCTTCCACCATTATTGACATTGAGCTAAGGAGGGATGAGGGAGCACTGTGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp CTAACTCTCCTCTTCCAGGAAGCTGAAGGGCAGAGCTCAAAATATTCCTGGTCAAATACACATGTTAGCTaGTTCAACTGTTCTAGCGTT +
Preference number: 3 (lower is better)
Translates to: LTLLFQEAEGQSSKYSWSNTHVS*FNCSSV
Trigger: AACGCTAGAACAGTTGAACAAGCTAACATGTGTATT...TGACCAGGAATATTTTGAGCTCTGCCCTTCAGCTTCCTGGAAGAGGAGAGTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp ACAATTAAGCACATGCTATTTGAAAGATGGCAGCCTCAGATGACTTCCAAAAACTTATTTGTCCTCAGCTaGATCCACTGGCCTCTGAGC +
Preference number: 3 (lower is better)
Translates to: TIKHMLFERWQPQMTSKNLFVLS*IHWPLS
Trigger: GCTCAGAGGCCAGTGGATCAAGCTGAGGACAAATAA...GTTTTTGGAAGTCATCTGAGGCTGCCATCTTTCAAATAGCATGTGCTTAATTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
3UTR TCA 72 bp TTAAGCACATGCTATTTGAAAGATGGCAGCCTCAGATaGCTTCCAAAAACAAACAAGTCCCAGGGCTTTCTC +
Preference number: 3 (lower is better)
Translates to: LSTCYLKDGSLR*LPKTNKSQGFL
Trigger: GAGAAAGCCCTGGGACTTGTTTGTTTTTGGAAGTCATCTGAGGCTGCCATCTTTCAAATAGCATGTGCTTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp GGTCTTCTCTACTTTCTTCTAGGACAGCAGATCTCATaGAGGACTAGGCACCTGTTATATCTTGATTCTAAG +
Preference number: 3 (lower is better)
Translates to: GLLYFLLGQQIS*RTRHLLYLDSK
Trigger: CTTAGAATCAAGATATAACAGGTGCCTAGTCCTTCATGAGATCTGCTGTCCTAGAAGAAAGTAGAGAAGACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp ATTGAGAATAGGGTAGATTGGGGTCTTAGAAATGAGTaGCTTTGTTTGGACTTTTGTTGGATGGGCTTCTGT +
Preference number: 3 (lower is better)
Translates to: IENRVDWGLRNE*LCLDFCWMGFC
Trigger: ACAGAAGCCCATCCAACAAAAGTCCAAACAAAGCCACTCATTTCTAAGACCCCAATCTACCCTATTCTCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp CTAAAGTTCACAGGGGAAATTGAGAATAGGGTAGATTaGGGTCTTAGAAATGAGTGGCTTTGTTTGGACTTT +
Preference number: 3 (lower is better)
Translates to: LKFTGEIENRVD*GLRNEWLCLDF
Trigger: AAAGTCCAAACAAAGCCACTCATTTCTAAGACCCCAATCTACCCTATTCTCAATTTCCCCTGTGAACTTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp TCAGTATCTGTTTCAGTGAGCATTTTATGTGCTTGCTaGATACACATGTTAGCTTGTTCAACTGTTCTAGCG +
Preference number: 3 (lower is better)
Translates to: SVSVSVSILCAC*IHMLACSTVLA
Trigger: CGCTAGAACAGTTGAACAAGCTAACATGTGTATTCAGCAAGCACATAAAATGCTCACTGAAACAGATACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR TCA 72 bp GGACTAGGCACCTGTTATATCTTGATTCTAAGTTGCTaGGTCAATAGAAGGTGCAGATGTATATCTAAAGGT +
Preference number: 3 (lower is better)
Translates to: GLGTCYILILSC*VNRRCRCISKG
Trigger: ACCTTTAGATATACATCTGCACCTTCTATTGACTCAGCAACTTAGAATCAAGATATAACAGGTGCCTAGTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CCA 72 bp GGTGTCATTACAATTAAGCACATGCTATTTGAAAGATaGCAGCCTCAGATGACTTCCAAAAACAAACAAGTC +
Preference number: 3 (lower is better)
Translates to: GVITIKHMLFER*QPQMTSKNKQV
Trigger: GACTTGTTTGTTTTTGGAAGTCATCTGAGGCTGCCATCTTTCAAATAGCATGTGCTTAATTGTAATGACACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR-3UTR CAA 90 bp ATACACATGTTAGCTTGTTCAACTGTTCTAGCGTTAGTCCACAATGTCATCTTTCTAACCTGCATGCTCTaGTCCAATTTGTATAGTCAA +
Preference number: 3 (lower is better)
Translates to: IHMLACSTVLALVHNVIFLTCML*SNLYSQ
Trigger: TTGACTATACAAATTGGACAAGAGCATGCAGGTTAG...AAAGATGACATTGTGGACTAACGCTAGAACAGTTGAACAAGCTAACATGTGTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR TCA 90 bp GTAGATGAGCTCACTACTCTCCTCCCCAGGAACTTGCCTGCTCAGGCTCTCAGCAACCTGGCAGCCCTCTaGACCATGTGGCCAGCGCCG +
Preference number: 4 (lower is better)
Translates to: VDELTTLLPRNLPAQALSNLAAL*TMWPAP
Trigger: CGGCGCTGGCCACATGGTTCAGAGGGCTGCCAGGTT...GCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp ACTCCATGGAAGGGCAAGGCAGGGGTACTAGAGGTGAATGGGAAGCAGGGCAGAGCTGATCCCAGTGTCTaGCAGGGCCAGGCTCAGTAC +
Preference number: 4 (lower is better)
Translates to: TPWKGKAGVLEVNGKQGRADPSV*QGQAQY
Trigger: GTACTGAGCCTGGCCCTGGCAGACACTGGGATCAGC...TCTGCCCTGCTTCCCATTCACCTCTAGTACCCCTGCCTTGCCCTTCCATGGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR TCA 90 bp ACACCTGCCCCTTCCACCATTAGACTTCCAGGATGGTCTCCATTACCCTGTTGGCAAGGGCATTCAGGCTaGTCCCAGTGTCTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: TPAPSTIRLPGWSPLPCWQGHSG*SQCLPG
Trigger: CCCTGGCAGACACTGGGATCAGCCTGAATGCCCTTG...CCAACAGGGTAATGGAGACCATCCTGGAAGTCTAATGGTGGAAGGGGCAGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp ACTCCATGGAAGGGCAAGGCAGGGGTACTAGAGGTGAATGGGAAGCAGGGCAGAGAGGCTGGATACCGCTaGAACAAGGGCATTCAGGCT +
Preference number: 4 (lower is better)
Translates to: TPWKGKAGVLEVNGKQGREAGYR*NKGIQA
Trigger: AGCCTGAATGCCCTTGTTGCAGCGGTATCCAGCCTC...TCTGCCCTGCTTCCCATTCACCTCTAGTACCCCTGCCTTGCCCTTCCATGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR TCA 90 bp GCAAAGGACACAGTCATCCTGAGCTCTGGAGACTGTCACTGTGGAGAGGAAATCCAAGGGCATTCAGGCTaGTCCCAGTGTCTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: AKDTVILSSGDCHCGEEIQGHSG*SQCLPG
Trigger: CCCTGGCAGACACTGGGATCAGCCTGAATGCCCTTG...GATTTCCTCTCCACAGTGACAGTCTCCAGAGCTCAGGATGACTGTGTCCTTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR TCA 90 bp CTGGGACACCTGCCCCTTCCACCATTAGACTTCCAGGATGGTCTCCATTACCCTTGCCCAGAAGGCAGATaGCATCCACACAAACAGCAC +
Preference number: 4 (lower is better)
Translates to: LGHLPLPPLDFQDGLHYPCPEGR*HPHKQH
Trigger: GTGCTGTTTGTGTGGATGTCATCTGCCTTCTGGGCA...AGGGTAATGGAGACCATCCTGGAAGTCTAATGGTGGAAGGGGCAGGTGTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp CTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGGCTGGCCAGTGCTGTTaGAAATCCCTGGAAACCATG +
Preference number: 4 (lower is better)
Translates to: LHRHVRERSGERPNLQARAGQCC*KSLETM
Trigger: CATGGTTTCCAGGGATTTGCAACAGCACTGGCCAGC...CCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR CCA 90 bp GCCCCAGCCAAGCAGCAGCATTCTGCCTGGAAGAGTAGTATTCACCGGGAGATGGGGAGTCCGCAGATCTaGAGTCTTGCAGAAAGAGAA +
Preference number: 4 (lower is better)
Translates to: APAKQQHSAWKSSIHREMGSPQI*SLAERE
Trigger: TTCTCTTTCTGCAAGACTCCAGATCTGCGGACTCCC...CATCTCCCGGTGAATACTACTCTTCCAGGCAGAATGCTGCTGCTTGGCTGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000225403.2
CDS-3UTR CCA 90 bp CTGGGACACCTGCCCCTTCCACCATTAGACTTCCAGGATGGTCTCCATTACCCTCACTGCCACAGATGCTaGCCAGTGCTGTTGCAAATC +
Preference number: 4 (lower is better)
Translates to: LGHLPLPPLDFQDGLHYPHCHRC*PVLLQI
Trigger: GATTTGCAACAGCACTGGCCAGCATCTGTGGCAGTG...AGGGTAATGGAGACCATCCTGGAAGTCTAATGGTGGAAGGGGCAGGTGTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR TCA 90 bp CCACTCCTGGAGAATTTCTGCTCCATGAACCGGTATGAAGTGTGTGTGATGAACCAAGGGCATTCAGGCTaGTCCCAGTGTCTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: PLLENFCSMNRYEVCVMNQGHSG*SQCLPG
Trigger: CCCTGGCAGACACTGGGATCAGCCTGAATGCCCTTG...GTTCATCACACACACTTCATACCGGTTCATGGAGCAGAAATTCTCCAGGAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR TCA 90 bp AAGAGTAGTATTCACCGGGAGATGGCCACTCCTGGAGAATTTCTGCTCCATGAACAAGGGCATTCAGGCTaGTCCCAGTGTCTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: KSSIHREMATPGEFLLHEQGHSG*SQCLPG
Trigger: CCCTGGCAGACACTGGGATCAGCCTGAATGCCCTTG...TTCATGGAGCAGAAATTCTCCAGGAGTGGCCATCTCCCGGTGAATACTACTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR TCA 90 bp CATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGAAATCTGCCTGCCCAGAAGGCAGATaGCATCCACACAAACAGCAC +
Preference number: 4 (lower is better)
Translates to: HVRERSGERPNLQARKSACPEGR*HPHKQH
Trigger: GTGCTGTTTGTGTGGATGTCATCTGCCTTCTGGGCA...GGCAGATTTCCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR TCA 90 bp GAAGTTTCTGTCACCCCTCGAATAGTCCAGTGTACAGCATGTCCCCACAGGCTCTGCCCAGAAGGCAGATaGCATCCACACAAACAGCAC +
Preference number: 4 (lower is better)
Translates to: EVSVTPRIVQCTACPHRLCPEGR*HPHKQH
Trigger: GTGCTGTTTGTGTGGATGTCATCTGCCTTCTGGGCA...GAGCCTGTGGGGACATGCTGTACACTGGACTATTCGAGGGGTGACAGAAACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR TCA 90 bp CTGCCTGGAAGAGTAGTATTCACCGGGAGATGGCCACTCCTGGAGAATTTCTGCTGCCCAGAAGGCAGATaGCATCCACACAAACAGCAC +
Preference number: 4 (lower is better)
Translates to: LPGRVVFTGRWPLLENFCCPEGR*HPHKQH
Trigger: GTGCTGTTTGTGTGGATGTCATCTGCCTTCTGGGCA...GCAGAAATTCTCCAGGAGTGGCCATCTCCCGGTGAATACTACTCTTCCAGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR GCA 90 bp CATTCTGCCTGGAAGAGTAGTATTCACCGGGAGATGGCCACTCCTGGAGAATTTTCAGTACCAGCAGGTTaGTGGGAGTCCGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: HSAWKSSIHREMATPGEFSVPAG*WESADL
Trigger: CAGATCTGCGGACTCCCAGCAACCTGCTGGTACTGA...AAATTCTCCAGGAGTGGCCATCTCCCGGTGAATACTACTCTTCCAGGCAGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR GCA 90 bp ATTCTGCCTGGAAGAGTAGTATTCACCGGGAGATGGCCACTCCTGGAGAATTTCTCAGTACCAGCAGGTTaGTGGGAGTCCGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: ILPGRVVFTGRWPLLENFSVPAG*WESADL
Trigger: CAGATCTGCGGACTCCCAGCAACCTGCTGGTACTGA...GAAATTCTCCAGGAGTGGCCATCTCCCGGTGAATACTACTCTTCCAGGCAGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR GCA 90 bp TCTCAGCTTTATAGGATGTGCTTTCTGCCTCTCACAGTCCCTGGGACACCTGCCACAGATGCTGGCCAGTaGTGTTGCAAATCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: SQLYRMCFLPLTVPGTPATDAGQ*CCKSLE
Trigger: TTCCAGGGATTTGCAACAGCACTGGCCAGCATCTGT...GGCAGGTGTCCCAGGGACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp CTTGCCTGCTCAGGCTCTCAGCTTTATAGGATGTGCTTTCTGCCTCTCACAGTCTGTGGAGACAGACACTaGCAGGTTCCTCTACAGACC +
Preference number: 4 (lower is better)
Translates to: LACSGSQLYRMCFLPLTVCGDRH*QVPLQT
Trigger: GGTCTGTAGAGGAACCTGGCAGTGTCTGTCTCCACA...GACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGAGCCTGAGCAGGCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022338.7
CDS-3UTR TCA 90 bp GAGAAGCCTTTCCTACATGCACTCAAGATCCTGCGAGTGCCCAAAGATGAAGAGGCATGGTTTTGGCGATaGGAGCAGGCACCATCTGTA +
Preference number: 4 (lower is better)
Translates to: EKPFLHALKILRVPKDEEAWFWR*EQAPSV
Trigger: TACAGATGGTGCCTGCTCTCATCGCCAAAACCATGC...CTCTTCATCTTTGGGCACTCGCAGGATCTTGAGTGCATGTAGGAAAGGCTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022338.7
CDS-3UTR GCA 90 bp CTAACTCTCCTCTTCCAGGAAGCTGAAGGGCAGAGCTCAAAATATTCCTGGTCATCAGTACCAGCAGGTTaGTGGGAGTCCGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: LTLLFQEAEGQSSKYSWSSVPAG*WESADL
Trigger: CAGATCTGCGGACTCCCAGCAACCTGCTGGTACTGA...TGACCAGGAATATTTTGAGCTCTGCCCTTCAGCTTCCTGGAAGAGGAGAGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp CTGGAGAATTTCTGCTCCATGAACCGGTATGAAGTGTGTGTGATGAACAGGGGTGAGGCTGGATACCGCTaGAACAAGGGCATTCAGGCT +
Preference number: 4 (lower is better)
Translates to: LENFCSMNRYEVCVMNRGEAGYR*NKGIQA
Trigger: AGCCTGAATGCCCTTGTTGCAGCGGTATCCAGCCTC...ACCCCTGTTCATCACACACACTTCATACCGGTTCATGGAGCAGAAATTCTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR CCA 90 bp CAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGCACTGCCACAGATGCTaGCCAGTGCTGTTGCAAATC +
Preference number: 4 (lower is better)
Translates to: QLLHRHVRERSGERPNLQHCHRC*PVLLQI
Trigger: GATTTGCAACAGCACTGGCCAGCATCTGTGGCAGTG...CTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp GTTGTAGATGAGCTCACTACTCTCCTCCCCAGGAACTaGCCTGCTCAGGCTCTCAGCTTTATAGGATGTGCT +
Preference number: 4 (lower is better)
Translates to: VVDELTTLLPRN*PAQALSFIGCA
Trigger: AGCACATCCTATAAAGCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTACAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp GACTTGGACAAAGCTGATACCTCCCACTCTTGCTACTaGTCTTCTGGCTCCGCCTGTCTTCAACCCTTTCTC +
Preference number: 4 (lower is better)
Translates to: DLDKADTSHSCY*SSGSACLQPFL
Trigger: GAGAAAGGGTTGAAGACAGGCGGAGCCAGAAGACAAGTAGCAAGAGTGGGAGGTATCAGCTTTGTCCAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR TCA 90 bp GCAACCCCAAATCTGCAAGTTGTAGATGAGCTCACTACTCTCCTCCCCAGGAACCTCCATGAACCGGTATaGAGTGTGTGTGATGAACAG +
Preference number: 4 (lower is better)
Translates to: ATPNLQVVDELTTLLPRNLHEPV*SVCDEQ
Trigger: CTGTTCATCACACACACTTCATACCGGTTCATGGAG...GTTCCTGGGGAGGAGAGTAGTGAGCTCATCTACAACTTGCAGATTTGGGGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR TCA 90 bp CAGGAACTTGCCTGCTCAGGCTCTCAGCTTTATAGGATGTGCTTTCTGCCTCTCCTCCATGAACCGGTATaGAGTGTGTGTGATGAACAG +
Preference number: 4 (lower is better)
Translates to: QELACSGSQLYRMCFLPLLHEPV*SVCDEQ
Trigger: CTGTTCATCACACACACTTCATACCGGTTCATGGAG...GAGAGGCAGAAAGCACATCCTATAAAGCTGAGAGCCTGAGCAGGCAAGTTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp AAAACTGATGAAGTTTCTGTCACCCCTCGAATAGTCCAGTGTACAGCATGTCCCGAGGCTGGATACCGCTaGAACAAGGGCATTCAGGCT +
Preference number: 4 (lower is better)
Translates to: KTDEVSVTPRIVQCTACPEAGYR*NKGIQA
Trigger: AGCCTGAATGCCCTTGTTGCAGCGGTATCCAGCCTC...GGGACATGCTGTACACTGGACTATTCGAGGGGTGACAGAAACTTCATCAGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR CCA 90 bp CAATTGCTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGGGAGTCCGCAGATCTaGAGTCTTGCAGAAAGAGAA +
Preference number: 4 (lower is better)
Translates to: QLLHRHVRERSGERPNLQGSPQI*SLAERE
Trigger: TTCTCTTTCTGCAAGACTCCAGATCTGCGGACTCCC...CTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAGCAATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp ATCTCAGTGAAGCAAAGAGTGCTGAAGCCAATGAGATaGGAAGGGAAGTTCAGACAGGCTCCCCAGGAAAGC +
Preference number: 4 (lower is better)
Translates to: ISVKQRVLKPMR*EGKFRQAPQES
Trigger: GCTTTCCTGGGGAGCCTGTCTGAACTTCCCTTCCAATCTCATTGGCTTCAGCACTCTTTGCTTCACTGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp CTTTCTCTCTATCTGAAGGGTCTTTCCCCTAATTTATCACAGTGCTCCCTCATCGAGGCTGGATACCGCTaGAACAAGGGCATTCAGGCT +
Preference number: 4 (lower is better)
Translates to: LSLYLKGLSPNLSQCSLIEAGYR*NKGIQA
Trigger: AGCCTGAATGCCCTTGTTGCAGCGGTATCCAGCCTC...GATGAGGGAGCACTGTGATAAATTAGGGGAAAGACCCTTCAGATAGAGAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp TCAATGTCAATAATGGTGGAAGAGAGGAAGGGTCCCCAACAAGGTTACTCAGGGACAGATGCTGGCCAGTaGTGTTGCAAATCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: SMSIMVEERKGPQQGYSGTDAGQ*CCKSLE
Trigger: TTCCAGGGATTTGCAACAGCACTGGCCAGCATCTGT...CCCTGAGTAACCTTGTTGGGGACCCTTCCTCTCTTCCACCATTATTGACATTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp TCATATGCGGGCCCTGGAGTGTGGCCAAGTGTCATCTaGTCTGTATATCACCTGGTTGAGTACATAATCCAG +
Preference number: 4 (lower is better)
Translates to: SYAGPGVWPSVI*SVYHLVEYIIQ
Trigger: CTGGATTATGTACTCAACCAGGTGATATACAGACAAGATGACACTTGGCCACACTCCAGGGCCCGCATATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp ATCTGCCTTCTTCCCATGTCTTCACTGAGATTGGGCTaGGATGCTGATCCCTTTGGCCTGTTTCTTATCTCG +
Preference number: 4 (lower is better)
Translates to: ICLLPMSSLRLG*DADPFGLFLIS
Trigger: CGAGATAAGAAACAGGCCAAAGGGATCAGCATCCAAGCCCAATCTCAGTGAAGACATGGGAAGAAGGCAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp CAAGCATTATTGAGCCACATCCTTCCTTGGTCTCTCTaGACCCAGAGACAGCTGAATTACTCCATGGAAGGG +
Preference number: 4 (lower is better)
Translates to: QALLSHILPWSL*TQRQLNYSMEG
Trigger: CCCTTCCATGGAGTAATTCAGCTGTCTCTGGGTCAAGAGAGACCAAGGAAGGATGTGGCTCAATAATGCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR CCA 90 bp AGACTTCCAGGATGGTCTCCATTACCCTGTTGGTCTTCTCTACTTTCTTCTAGGGGGAGTCCGCAGATCTaGAGTCTTGCAGAAAGAGAA +
Preference number: 4 (lower is better)
Translates to: RLPGWSPLPCWSSLLSSRGSPQI*SLAERE
Trigger: TTCTCTTTCTGCAAGACTCCAGATCTGCGGACTCCC...CCTAGAAGAAAGTAGAGAAGACCAACAGGGTAATGGAGACCATCCTGGAAGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR CCA 90 bp TCTCAGCTTTATAGGATGTGCTTTCTGCCTCTCACAGTCCCTGGGACACCTGCCATGTACAGGATTCCTTaGGCTTTGGAAGAATCTGTA +
Preference number: 4 (lower is better)
Translates to: SQLYRMCFLPLTVPGTPAMYRIP*ALEESV
Trigger: TACAGATTCTTCCAAAGCCCAAGGAATCCTGTACAT...GGCAGGTGTCCCAGGGACTGTGAGAGGCAGAAAGCACATCCTATAAAGCTGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp GTCACTGGTGTCATTACAATTAAGCACATGCTATTTGAAAGATGGCAGCCTCAGGCTGGCCAGTGCTGTTaGAAATCCCTGGAAACCATG +
Preference number: 4 (lower is better)
Translates to: VTGVITIKHMLFERWQPQAGQCC*KSLETM
Trigger: CATGGTTTCCAGGGATTTGCAACAGCACTGGCCAGC...CTGAGGCTGCCATCTTTCAAATAGCATGTGCTTAATTGTAATGACACCAGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp ACTCAGGACATGACTTTTTGGTCTCACCCTCCCCGCTaGGAACTATCACTTATTTGTCCTCAGCTTGATCCA +
Preference number: 4 (lower is better)
Translates to: TQDMTFWSHPPR*ELSLICPQLDP
Trigger: TGGATCAAGCTGAGGACAAATAAGTGATAGTTCCAAGCGGGGAGGGTGAGACCAAAAAGTCATGTCCTGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000225070.2
CDS-3UTR GCA 90 bp ACAATTAAGCACATGCTATTTGAAAGATGGCAGCCTCAGATGACTTCCAAAAACTCAGTACCAGCAGGTTaGTGGGAGTCCGCAGATCTG +
Preference number: 4 (lower is better)
Translates to: TIKHMLFERWQPQMTSKNSVPAG*WESADL
Trigger: CAGATCTGCGGACTCCCAGCAACCTGCTGGTACTGA...GTTTTTGGAAGTCATCTGAGGCTGCCATCTTTCAAATAGCATGTGCTTAATTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp GTGCTGGTGGTCAGGGGACACCTAACCTGCATGCTCTaGTCCAATTTGTATAGTCAAATCATCATTTCTGTC +
Preference number: 4 (lower is better)
Translates to: VLVVRGHLTCML*SNLYSQIIISV
Trigger: GACAGAAATGATGATTTGACTATACAAATTGGACAAGAGCATGCAGGTTAGGTGTCCCCTGACCACCAGCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp AGATGGATCTCAAGCATTATTGAGCCACATCCTTCCTaGGTCTCTCTTGACCCAGAGACAGCTGAATTACTC +
Preference number: 4 (lower is better)
Translates to: RWISSIIEPHPS*VSLDPETAELL
Trigger: GAGTAATTCAGCTGTCTCTGGGTCAAGAGAGACCAAGGAAGGATGTGGCTCAATAATGCTTGAGATCCATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
3UTR CAA 72 bp GAGCATTTTATGTGCTTGCTGAATACACATGTTAGCTaGTTCAACTGTTCTAGCGTTAGTCCACAATGTCAT +
Preference number: 4 (lower is better)
Translates to: EHFMCLLNTHVS*FNCSSVSPQCH
Trigger: ATGACATTGTGGACTAACGCTAGAACAGTTGAACAAGCTAACATGTGTATTCAGCAAGCACATAAAATGCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS GCA 90 bp GCCGTGTCCCATGCCAACTGTCTGCCGGAGGAGGCTGGATACCGCTaGAACAAGGGCATTCAGGCTGATCCCAGTGTCTGCCAGGGCCAG +
Preference number: 5 (lower is better)
Translates to: AVSHANCLPEEAGYR*NKGIQADPSVCQGQ
Trigger: CTGGCCCTGGCAGACACTGGGATCAGCCTGAATGCCCTTGTTGCAGCGGTATCCAGCCTCCTCCGGCAGACAGTTGGCATGGGACACGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS GCA 90 bp GCTGGATACCGCTGCAACAAGGGCATTCAGGCTGATCCCAGTGTCTaGCAGGGCCAGGCTCAGTACCAGCAGGTTGCTGGGAGTCCGCAG +
Preference number: 5 (lower is better)
Translates to: AGYRCNKGIQADPSV*QGQAQYQQVAGSPQ
Trigger: CTGCGGACTCCCAGCAACCTGCTGGTACTGAGCCTGGCCCTGGCAGACACTGGGATCAGCCTGAATGCCCTTGTTGCAGCGGTATCCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS GCA 90 bp ACACAAACAGCACCAGAGGGATGGCCGTGTCCCATGCCAACTGTCTaGCGGAGGAGGCTGGATACCGCTGCAACAAGGGCATTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: TQTAPEGWPCPMPTV*RRRLDTAATRAFRL
Trigger: CAGCCTGAATGCCCTTGTTGCAGCGGTATCCAGCCTCCTCCGGCAGACAGTTGGCATGGGACACGGCCATCCCTCTGGTGCTGTTTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS CCA 90 bp ATGCCCAGAAGGCAGATGACATCCACACAAACAGCACCAGAGGGATaGCCGTGTCCCATGCCAACTGTCTGCCGGAGGAGGCTGGATACC +
Preference number: 5 (lower is better)
Translates to: MPRRQMTSTQTAPEG*PCPMPTVCRRRLDT
Trigger: GGTATCCAGCCTCCTCCGGCAGACAGTTGGCATGGGACACGGCCATCCCTCTGGTGCTGTTTGTGTGGATGTCATCTGCCTTCTGGGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS CCA 90 bp CAGGGCCAGGCTCAGTACCAGCAGGTTGCTGGGAGTCCGCAGATCTaGAGTCTTCCATCAGCAGGACTGTTCCTACAGCCAGCACCTCAA +
Preference number: 5 (lower is better)
Translates to: QGQAQYQQVAGSPQI*SLPSAGLFLQPAPQ
Trigger: TTGAGGTGCTGGCTGTAGGAACAGTCCTGCTGATGGAAGACTCCAGATCTGCGGACTCCCAGCAACCTGCTGGTACTGAGCCTGGCCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225229.2
CDS CCA 90 bp AGTGGTGATAACGTCCCCAGGCAACGGCTGCACTGCCACAGATGCTaGCCAGTGCTGTTGCAAATCCCTGGAAACCATGAACCTGGCAGC +
Preference number: 5 (lower is better)
Translates to: SGDNVPRQRLHCHRC*PVLLQIPGNHEPGS
Trigger: GCTGCCAGGTTCATGGTTTCCAGGGATTTGCAACAGCACTGGCCAGCATCTGTGGCAGTGCAGCCGTTGCCTGGGGACGTTATCACCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR CAA 90 bp GTAGATGAGCTCACTACTCTCCTCCCCAGGAACTTGCCTGCTCAGGCTCTCAGCCTCAGTACCAGCAGGTaGCTGGGAGTCCGCAGATCT +
Preference number: 5 (lower is better)
Translates to: VDELTTLLPRNLPAQALSLSTSR*LGVRRS
Trigger: AGATCTGCGGACTCCCAGCAACCTGCTGGTACTGAG...GCTGAGAGCCTGAGCAGGCAAGTTCCTGGGGAGGAGAGTAGTGAGCTCATCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS GCA 90 bp AGTAGTGGTGATAACGTCCCCAGGCAACGGCTGCACTGCCACAGATaGTGGCCAGTGCTGTTGCAAATCCCTGGAAACCATGAACCTGGC +
Preference number: 5 (lower is better)
Translates to: SSGDNVPRQRLHCHR*WPVLLQIPGNHEPG
Trigger: GCCAGGTTCATGGTTTCCAGGGATTTGCAACAGCACTGGCCAGCATCTGTGGCAGTGCAGCCGTTGCCTGGGGACGTTATCACCACTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS CCA 90 bp CAGGGCCAGGCTCAGTACCAGCAGGTTGCTGGGAGTCCGCAGATCTaGAGTCTTGCAGAAAGAGAAGATGGTCAGGCCATTGAGGCTGAT +
Preference number: 5 (lower is better)
Translates to: QGQAQYQQVAGSPQI*SLAEREDGQAIEAD
Trigger: ATCAGCCTCAATGGCCTGACCATCTTCTCTTTCTGCAAGACTCCAGATCTGCGGACTCCCAGCAACCTGCTGGTACTGAGCCTGGCCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
ENSMUST00000225403.2
CDS CCA 90 bp ATGCCCAGAAGGCAGATGACATCCACACAAACAGCACCAGAGGGATaGCCGTGTCCCATGCCAACTGTCTGCGGGTGCAGTAGTGGTGAT +
Preference number: 5 (lower is better)
Translates to: MPRRQMTSTQTAPEG*PCPMPTVCGCSSGD
Trigger: ATCACCACTACTGCACCCGCAGACAGTTGGCATGGGACACGGCCATCCCTCTGGTGCTGTTTGTGTGGATGTCATCTGCCTTCTGGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR CAA 90 bp ACACCTGCCCCTTCCACCATTAGACTTCCAGGATGGTCTCCATTACCCTGTTGGCTCAGTACCAGCAGGTaGCTGGGAGTCCGCAGATCT +
Preference number: 5 (lower is better)
Translates to: TPAPSTIRLPGWSPLPCWLSTSR*LGVRRS
Trigger: AGATCTGCGGACTCCCAGCAACCTGCTGGTACTGAG...CCAACAGGGTAATGGAGACCATCCTGGAAGTCTAATGGTGGAAGGGGCAGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR CAA 90 bp CTTCACAGGCATGTGAGGGAGAGAAGTGGGGAGAGACCTAACTTACAGGCCAGGTGCTGGCCAGTGCTGTaGCAAATCCCTGGAAACCAT +
Preference number: 5 (lower is better)
Translates to: LHRHVRERSGERPNLQARCWPVL*QIPGNH
Trigger: ATGGTTTCCAGGGATTTGCAACAGCACTGGCCAGCA...CCTGGCCTGTAAGTTAGGTCTCTCCCCACTTCTCTCCCTCACATGCCTGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS-3UTR CAA 90 bp CTGGAGAATTTCTGCTCCATGAACCGGTATGAAGTGTGTGTGATGAACAGGGGTCTCAGTACCAGCAGGTaGCTGGGAGTCCGCAGATCT +
Preference number: 5 (lower is better)
Translates to: LENFCSMNRYEVCVMNRGLSTSR*LGVRRS
Trigger: AGATCTGCGGACTCCCAGCAACCTGCTGGTACTGAG...ACCCCTGTTCATCACACACACTTCATACCGGTTCATGGAGCAGAAATTCTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR CAA 90 bp AAAACTGATGAAGTTTCTGTCACCCCTCGAATAGTCCAGTGTACAGCATGTCCCCTCAGTACCAGCAGGTaGCTGGGAGTCCGCAGATCT +
Preference number: 5 (lower is better)
Translates to: KTDEVSVTPRIVQCTACPLSTSR*LGVRRS
Trigger: AGATCTGCGGACTCCCAGCAACCTGCTGGTACTGAG...GGGACATGCTGTACACTGGACTATTCGAGGGGTGACAGAAACTTCATCAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS-3UTR CAA 90 bp TCTTCACTGAGATTGGGCTTGGATGCTGATCCCTTTGGCCTGTTTCTTATCTCGATTGTGGGCATGGTTTaGGCGATGAGAGCAGGCACC +
Preference number: 5 (lower is better)
Translates to: SSLRLGLDADPFGLFLISIVGMV*AMRAGT
Trigger: GGTGCCTGCTCTCATCGCCAAAACCATGCCCACAAT...CGAGATAAGAAACAGGCCAAAGGGATCAGCATCCAAGCCCAATCTCAGTGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022338.7
CDS-3UTR CAA 90 bp TATCACAGTGCTCCCTCATCCCTCCTTAGCTCAATGTCAATAATGGTGGAAGAGGTCCTTCTTGCTTTTTaGTGGAGACAGACACTGCCA +
Preference number: 5 (lower is better)
Translates to: YHSAPSSLLSSMSIMVEEVLLAF*WRQTLP
Trigger: TGGCAGTGTCTGTCTCCACAAAAAAGCAAGAAGGAC...CTCTTCCACCATTATTGACATTGAGCTAAGGAGGGATGAGGGAGCACTGTGATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022338.7
CDS GCA 72 bp CGCTGCAACAAGGGCATTCAGGCTGATCCCAGTGTCTaGCAGGGCCAGGCTCAGTACCAGCAGGTTGCTGGG +
Preference number: 6 (lower is better)
Translates to: RCNKGIQADPSV*QGQAQYQQVAG
Trigger: CCCAGCAACCTGCTGGTACTGAGCCTGGCCCTGGCAGACACTGGGATCAGCCTGAATGCCCTTGTTGCAGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS GCA 72 bp ACCATGTGGCCAGCGCCGGAGGAGGCTGGATACCGCTaGAACAAGGGCATTCAGGCTGATCCCAGTGTCTGC +
Preference number: 6 (lower is better)
Translates to: TMWPAPEEAGYR*NKGIQADPSVC
Trigger: GCAGACACTGGGATCAGCCTGAATGCCCTTGTTGCAGCGGTATCCAGCCTCCTCCGGCGCTGGCCACATGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS TCA 72 bp TGCAAATCCCTGGAAACCATGAACCTGGCAGCCCTCTaGACCATGTGGCCAGCGCCGGAGGAGGCTGGATAC +
Preference number: 6 (lower is better)
Translates to: CKSLETMNLAAL*TMWPAPEEAGY
Trigger: GTATCCAGCCTCCTCCGGCGCTGGCCACATGGTTCAGAGGGCTGCCAGGTTCATGGTTTCCAGGGATTTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS GCA 72 bp CATGCCAACTGTCTGCCGGAGGAGGCTGGATACCGCTaGAACAAGGGCATTCAGGCTGATCCCAGTGTCTGC +
Preference number: 6 (lower is better)
Translates to: HANCLPEEAGYR*NKGIQADPSVC
Trigger: GCAGACACTGGGATCAGCCTGAATGCCCTTGTTGCAGCGGTATCCAGCCTCCTCCGGCAGACAGTTGGCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000225229.2
ENSMUST00000225403.2
CDS TCA 72 bp ATGCTGGCCAGTGCTGTTGCAAATCCCTGGAAACCATaGACCTGGCAGCCCTCTGAACCATGTGGCCAGCGC +
Preference number: 6 (lower is better)
Translates to: MLASAVANPWKP*TWQPSEPCGQR
Trigger: GCGCTGGCCACATGGTTCAGAGGGCTGCCAGGTTCATGGTTTCCAGGGATTTGCAACAGCACTGGCCAGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS GCA 72 bp AACGGCTGCACTGCCACAGATGCTGGCCAGTGCTGTTaGAAATCCCTGGAAACCATGAACCTGGCAGCCCTC +
Preference number: 6 (lower is better)
Translates to: NGCTATDAGQCC*KSLETMNLAAL
Trigger: GAGGGCTGCCAGGTTCATGGTTTCCAGGGATTTGCAACAGCACTGGCCAGCATCTGTGGCAGTGCAGCCGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS GCA 72 bp CCAGGCAACGGCTGCACTGCCACAGATGCTGGCCAGTaGTGTTGCAAATCCCTGGAAACCATGAACCTGGCA +
Preference number: 6 (lower is better)
Translates to: PGNGCTATDAGQ*CCKSLETMNLA
Trigger: TGCCAGGTTCATGGTTTCCAGGGATTTGCAACAGCACTGGCCAGCATCTGTGGCAGTGCAGCCGTTGCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS GCA 72 bp CCACACAAACAGCACCAGAGGGATGGCCGTGTCCCATaGCAACTGTCTGCGGGTGCAGTAGTGGTGATAACG +
Preference number: 6 (lower is better)
Translates to: PHKQHQRDGRVP*QLSAGAVVVIT
Trigger: CGTTATCACCACTACTGCACCCGCAGACAGTTGGCATGGGACACGGCCATCCCTCTGGTGCTGTTTGTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS GCA 72 bp GATAACGTCCCCAGGCAACGGCTGCACTGCCACAGATaGTGGCCAGTGCTGTTGCAAATCCCTGGAAACCAT +
Preference number: 6 (lower is better)
Translates to: DNVPRQRLHCHR*WPVLLQIPGNH
Trigger: ATGGTTTCCAGGGATTTGCAACAGCACTGGCCAGCATCTGTGGCAGTGCAGCCGTTGCCTGGGGACGTTATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS GCA 72 bp AGTAGTGGTGATAACGTCCCCAGGCAACGGCTGCACTaGCACAGATGCTGGCCAGTGCTGTTGCAAATCCCT +
Preference number: 6 (lower is better)
Translates to: SSGDNVPRQRLH*HRCWPVLLQIP
Trigger: AGGGATTTGCAACAGCACTGGCCAGCATCTGTGGCAGTGCAGCCGTTGCCTGGGGACGTTATCACCACTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022338.7
ENSMUST00000225070.2
CDS CCA 72 bp GCTCAGTACCAGCAGGTTGCTGGGAGTCCGCAGATCTaGAGTCTTCCATCAGCAGGACTGTTCCTACAGCCA +
Preference number: 6 (lower is better)
Translates to: AQYQQVAGSPQI*SLPSAGLFLQP
Trigger: TGGCTGTAGGAACAGTCCTGCTGATGGAAGACTCCAGATCTGCGGACTCCCAGCAACCTGCTGGTACTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000225229.2