Pregenerated sensors for RGN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023070Ensembl transcript IDs: ENSMUST00000023832.7
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACACAGAAAAAGAATGGTCACAGTCCCATTTCAACCCCCAGAGCAATTTGCCATCCACTTGTCATTCTCTaGGGAAAATCTTCGACCTTT | + |
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Preference number: 2 (lower is better) Translates to: TQKKNGHSPISTPRAICHPLVIL*GKSSTF Trigger: AAAGGTCGAAGATTTTCCCCAGAGAATGACAAGTGG...ATGGCAAATTGCTCTGGGGGTTGAAATGGGACTGTGACCATTCTTTTTCTGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| 3UTR-3UTR TCA 90 bp | CTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCATTTCACAAAGCTTTTTCTTCTaGCAGCAAGGAAGAGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: LMRSKYGTQKKNGHSPISQSFFF*QQGRAA Trigger: TGCAGCTCTTCCTTGCTGTCAGAAGAAAAAGCTTTG...TGAAATGGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| 3UTR-3UTR CCA 90 bp | TTAGAACCACAGATTGTGCCCCAGGGTTTGAATAACATCTTCTGCCAGTATTTTAACACAGAAAAAGAATaGTCACAGTCCCATTTCAAC | + |
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Preference number: 2 (lower is better) Translates to: LEPQIVPQGLNNIFCQYFNTEKE*SQSHFN Trigger: GTTGAAATGGGACTGTGACCATTCTTTTTCTGTGTT...AAAATACTGGCAGAAGATGTTATTCAAACCCTGGGGCACAATCTGTGGTTCTAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| 3UTR-3UTR GCA 90 bp | CTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCATTTCACACTCTTCATTAATATaGTATGCCCTAGGTTTATTC | + |
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Preference number: 2 (lower is better) Translates to: LMRSKYGTQKKNGHSPISHSSLI*YALGLF Trigger: GAATAAACCTAGGGCATAGCATATTAATGAAGAGTG...TGAAATGGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| 3UTR TCA 72 bp | CATTTCAACCCCCAGAGCAATTTGCCATCATCAGGCTaGTTGATAGTTGAACTCCCTGTTGCATTTCTACAG | + |
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Preference number: 3 (lower is better) Translates to: HFNPQSNLPSSG*LIVELPVAFLQ Trigger: CTGTAGAAATGCAACAGGGAGTTCAACTATCAATCAGCCTGATGATGGCAAATTGCTCTGGGGGTTGAAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| 3UTR CCA 72 bp | CCTTATGCGCAGCAAATATGGAACACAGAAAAAGAATaGTCACAGTCCCATTTCAACCCCCAGAGCAATTTG | + |
|
Preference number: 3 (lower is better) Translates to: PYAQQIWNTEKE*SQSHFNPQSNL Trigger: CAAATTGCTCTGGGGGTTGAAATGGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| 3UTR TCA 72 bp | CCAGAGCAATTTGCCATCATCAGGCTGATTGATAGTTaGACTCCCTGTTGCATTTCTACAGAATTGCTTTTA | + |
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Preference number: 3 (lower is better) Translates to: PEQFAIIRLIDS*TPCCISTELLL Trigger: TAAAAGCAATTCTGTAGAAATGCAACAGGGAGTTCAACTATCAATCAGCCTGATGATGGCAAATTGCTCTGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| 3UTR CCA 72 bp | ATTGATTTGTTTTGGAAGCCTTATGCGCAGCAAATATaGAACACAGAAAAAGAATGGTCACAGTCCCATTTC | + |
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Preference number: 3 (lower is better) Translates to: IDLFWKPYAQQI*NTEKEWSQSHF Trigger: GAAATGGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCCAAAACAAATCAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | CTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCATTTCACCGCTCAAGAACAGCTaGGGCCGTTTCCTCAGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LMRSKYGTQKKNGHSPISPLKNS*GRFLSH Trigger: ATGGCTGAGGAAACGGCCCCAGCTGTTCTTGAGCGG...TGAAATGGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR GCA 90 bp | TTAGAACCACAGATTGTGCCCCAGGGTTTGAATAACATCTTCTGCCAGTATTTTTACAAGGACCCTTGGTaGCGCTCAAGAACAGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LEPQIVPQGLNNIFCQYFYKDPW*RSRTAG Trigger: CCCAGCTGTTCTTGAGCGGCACCAAGGGTCCTTGTA...AAAATACTGGCAGAAGATGTTATTCAAACCCTGGGGCACAATCTGTGGTTCTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR GCA 90 bp | AAAGAATGGTCACAGTCCCATTTCAACCCCCAGAGCAATTTGCCATCATCAGGCGGCAACTTCACAGTTTaGAGTCTTTTCCCTGTCTCA | + |
|
Preference number: 4 (lower is better) Translates to: KEWSQSHFNPQSNLPSSGGNFTV*SLFPVS Trigger: TGAGACAGGGAAAAGACTGCAAACTGTGAAGTTGCC...GCCTGATGATGGCAAATTGCTCTGGGGGTTGAAATGGGACTGTGACCATTCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | GGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCACTTGGTTCCAATGGTaGCAACATAGCCTCCCAACT | + |
|
Preference number: 4 (lower is better) Translates to: GSLMRSKYGTQKKNGHSPTWFQW*QHSLPT Trigger: AGTTGGGAGGCTATGTTGCCACCATTGGAACCAAGT...GGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR TCA 90 bp | AAAGAATGGTCACAGTCCCATTTCAACCCCCAGAGCAATTTGCCATCATCAGGCCGAGACCTGTTATCTTaGAAATGTTACCAGCATCAG | + |
|
Preference number: 4 (lower is better) Translates to: KEWSQSHFNPQSNLPSSGRDLLS*KCYQHQ Trigger: CTGATGCTGGTAACATTTTCAAGATAACAGGTCTCG...GCCTGATGATGGCAAATTGCTCTGGGGGTTGAAATGGGACTGTGACCATTCTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR TCA 90 bp | ACACAGAAAAAGAATGGTCACAGTCCCATTTCAACCCCCAGAGCAATTTGCCATATGGGGCAATTCCTTTaGCTCCGAGACCTGTTATCT | + |
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Preference number: 4 (lower is better) Translates to: TQKKNGHSPISTPRAICHMGQFL*LRDLLS Trigger: AGATAACAGGTCTCGGAGTCAAAGGAATTGCCCCAT...ATGGCAAATTGCTCTGGGGGTTGAAATGGGACTGTGACCATTCTTTTTCTGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | CTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCATTTCAGAGTACAAGGACCCTTaGTGCCGCTCAAGAACAGCT | + |
|
Preference number: 4 (lower is better) Translates to: LMRSKYGTQKKNGHSPISEYKDP*CRSRTA Trigger: AGCTGTTCTTGAGCGGCACCAAGGGTCCTTGTACTC...TGAAATGGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR TCA 90 bp | GGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCTATTTCTTCACACTGTaGTCAGGAAAGAGGGAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: GSLMRSKYGTQKKNGHSPYFFTL*SGKREY Trigger: GTACTCCCTCTTTCCTGATCACAGTGTGAAGAAATA...GGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | GGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCTCAAAGCACAGAACTTaGTTCCAATGGTGGCAACAT | + |
|
Preference number: 4 (lower is better) Translates to: GSLMRSKYGTQKKNGHSPSKHRT*FQWWQH Trigger: ATGTTGCCACCATTGGAACCAAGTTCTGTGCTTTGA...GGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | TGTTTTGGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACCCGTTTCCTCAGCCATaGTACCAGCAAAGTATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: CFGSLMRSKYGTQKKNGHPFPQP*YQQSIS Trigger: GGAGATACTTTGCTGGTACCATGGCTGAGGAAACGG...GTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCCAAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | CTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCATTTCAAGAACTTGGTTCCAATaGTGGCAACATAGCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: LMRSKYGTQKKNGHSPISRTWFQ*WQHSLP Trigger: TGGGAGGCTATGTTGCCACCATTGGAACCAAGTTCT...TGAAATGGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | CTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCATTTCACCCTGCATAGGAATATaGGGCAATTCCTTTGACTCC | + |
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Preference number: 4 (lower is better) Translates to: LMRSKYGTQKKNGHSPISPCIGI*GNSFDS Trigger: GGAGTCAAAGGAATTGCCCCATATTCCTATGCAGGG...TGAAATGGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | TTAGAACCACAGATTGTGCCCCAGGGTTTGAATAACATCTTCTGCCAGTATTTTCATTCAACCCATCCCTaGCACAGGTCACATACATTT | + |
|
Preference number: 4 (lower is better) Translates to: LEPQIVPQGLNNIFCQYFHSTHP*HRSHTF Trigger: AAATGTATGTGACCTGTGCCAGGGATGGGTTGAATG...AAAATACTGGCAGAAGATGTTATTCAAACCCTGGGGCACAATCTGTGGTTCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | GGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCTTGGAGATATCCACTTaGTCAAAGTATTTCTTCACA | + |
|
Preference number: 4 (lower is better) Translates to: GSLMRSKYGTQKKNGHSPLEIST*SKYFFT Trigger: TGTGAAGAAATACTTTGACCAAGTGGATATCTCCAA...GGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR GCA 90 bp | CTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCATTTCATCTTGTAAACAATTCTaGGGTTGGAAATCTGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LMRSKYGTQKKNGHSPISSCKQF*GWKSVL Trigger: CAGGACAGATTTCCAACCGCAGAATTGTTTACAAGA...TGAAATGGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CCA 90 bp | AATTCTTCAGTTATCTTCAAAGCTTTTTCTTCTGACAGCAAGGAAGAGCTGCAGACCAATCCAAACCATTaGAGATATCCACTTGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: NSSVIFKAFSSDSKEELQTNPNH*RYPLGQ Trigger: TTGACCAAGTGGATATCTCCAATGGTTTGGATTGGT...CTGCAGCTCTTCCTTGCTGTCAGAAGAAAAAGCTTTGAAGATAACTGAAGAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS CCA 90 bp | AGGAAAGAGGGAGTACAAGGACCCTTGGTGCCGCTCAAGAACAGCTaGGGCCGTTTCCTCAGCCATGGTACCAGCAAAGTATCTCCCAGC | + |
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Preference number: 5 (lower is better) Translates to: RKEGVQGPLVPLKNS*GRFLSHGTSKVSPS Trigger: GCTGGGAGATACTTTGCTGGTACCATGGCTGAGGAAACGGCCCCAGCTGTTCTTGAGCGGCACCAAGGGTCCTTGTACTCCCTCTTTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS TCA 90 bp | AAACCATTGGAGATATCCACTTGGTCAAAGTATTTCTTCACACTGTaGTCAGGAAAGAGGGAGTACAAGGACCCTTGGTGCCGCTCAAGA | + |
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Preference number: 5 (lower is better) Translates to: KPLEISTWSKYFFTL*SGKREYKDPWCRSR Trigger: TCTTGAGCGGCACCAAGGGTCCTTGTACTCCCTCTTTCCTGATCACAGTGTGAAGAAATACTTTGACCAAGTGGATATCTCCAATGGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CAA 90 bp | TTAGAACCACAGATTGTGCCCCAGGGTTTGAATAACATCTTCTGCCAGTATTTTAGCAACTCGCTGCACTaGATTGCTGACCGTATCCCA | + |
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Preference number: 5 (lower is better) Translates to: LEPQIVPQGLNNIFCQYFSNSLH*IADRIP Trigger: TGGGATACGGTCAGCAATCAAGTGCAGCGAGTTGCT...AAAATACTGGCAGAAGATGTTATTCAAACCCTGGGGCACAATCTGTGGTTCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CAA 90 bp | ACACAGAAAAAGAATGGTCACAGTCCCATTTCAACCCCCAGAGCAATTTGCCATAGGCAACTTCACAGTTaGCAGTCTTTTCCCTGTCTC | + |
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Preference number: 5 (lower is better) Translates to: TQKKNGHSPISTPRAICHRQLHS*QSFPCL Trigger: GAGACAGGGAAAAGACTGCAAACTGTGAAGTTGCCT...ATGGCAAATTGCTCTGGGGGTTGAAATGGGACTGTGACCATTCTTTTTCTGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS GCA 90 bp | CCAAAGCAGCATGAAGTTGTTTTATCAACAGGCAACTTCACAGTTTaGAGTCTTTTCCCTGTCTCAGGATCCAGGCGAATTACTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PKQHEVVLSTGNFTV*SLFPVSGSRRITLP Trigger: AGGAAGAGTAATTCGCCTGGATCCTGAGACAGGGAAAAGACTGCAAACTGTGAAGTTGCCTGTTGATAAAACAACTTCATGCTGCTTTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CAA 90 bp | ATTGATTTGTTTTGGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAAGGAGTACAAGGACCCTaGGTGCCGCTCAAGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: IDLFWKPYAQQIWNTEKEGVQGP*VPLKNS Trigger: GCTGTTCTTGAGCGGCACCAAGGGTCCTTGTACTCC...TTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCCAAAACAAATCAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CAA 90 bp | GGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACAGTCCCCCGAGACCTGTTATCTaGAAAATGTTACCAGCATCA | + |
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Preference number: 5 (lower is better) Translates to: GSLMRSKYGTQKKNGHSPPRPVI*KMLPAS Trigger: TGATGCTGGTAACATTTTCAAGATAACAGGTCTCGG...GGGACTGTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CAA 90 bp | TGTTTTGGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACGACCAATCCAAACCATaGGAGATATCCACTTGGTCA | + |
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Preference number: 5 (lower is better) Translates to: CFGSLMRSKYGTQKKNGHDQSKP*EISTWS Trigger: TGACCAAGTGGATATCTCCAATGGTTTGGATTGGTC...GTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCCAAAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CAA 90 bp | AATTCTTCAGTTATCTTCAAAGCTTTTTCTTCTGACAGCAAGGAAGAGCTGCAGTTCAAAGCACAGAACTaGGTTCCAATGGTGGCAACA | + |
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Preference number: 5 (lower is better) Translates to: NSSVIFKAFSSDSKEELQFKAQN*VPMVAT Trigger: TGTTGCCACCATTGGAACCAAGTTCTGTGCTTTGAA...CTGCAGCTCTTCCTTGCTGTCAGAAGAAAAAGCTTTGAAGATAACTGAAGAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS CCA 90 bp | CAATGTAGTAGAAGATTTTATGGTCCAGGGACCAATCCAAACCATTaGAGATATCCACTTGGTCAAAGTATTTCTTCACACTGTGATCAG | + |
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Preference number: 5 (lower is better) Translates to: QCSRRFYGPGTNPNH*RYPLGQSISSHCDQ Trigger: CTGATCACAGTGTGAAGAAATACTTTGACCAAGTGGATATCTCCAATGGTTTGGATTGGTCCCTGGACCATAAAATCTTCTACTACATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS TCA 90 bp | TTATTTTTCTTATCTTCATCCACCATGGCTAGGACAAATACTGATTaGTTTTCCCAGTTCAAAGCACAGAACTTGGTTCCAATGGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: LFFLSSSTMARTNTD*FSQFKAQNLVPMVA Trigger: TGCCACCATTGGAACCAAGTTCTGTGCTTTGAACTGGGAAAATCAATCAGTATTTGTCCTAGCCATGGTGGATGAAGATAAGAAAAATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CAA 90 bp | TGTTTTGGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAATGGTCACATTGGAGATATCCACTaGGTCAAAGTATTTCTTCAC | + |
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Preference number: 5 (lower is better) Translates to: CFGSLMRSKYGTQKKNGHIGDIH*VKVFLH Trigger: GTGAAGAAATACTTTGACCAAGTGGATATCTCCAAT...GTGACCATTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCCAAAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS-3UTR CAA 90 bp | ATTGATTTGTTTTGGAAGCCTTATGCGCAGCAAATATGGAACACAGAAAAAGAACAAAGCAGCATGAAGTaGTTTTATCAACAGGCAACT | + |
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Preference number: 5 (lower is better) Translates to: IDLFWKPYAQQIWNTEKEQSSMK*FYQQAT Trigger: AGTTGCCTGTTGATAAAACAACTTCATGCTGCTTTG...TTCTTTTTCTGTGTTCCATATTTGCTGCGCATAAGGCTTCCAAAACAAATCAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS CCA 72 bp | GGAGTACAAGGACCCTTGGTGCCGCTCAAGAACAGCTaGGGCCGTTTCCTCAGCCATGGTACCAGCAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: GVQGPLVPLKNS*GRFLSHGTSKV Trigger: TACTTTGCTGGTACCATGGCTGAGGAAACGGCCCCAGCTGTTCTTGAGCGGCACCAAGGGTCCTTGTACTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS TCA 72 bp | CAACATAGCCTCCCAACTGTCGAAGTGCCACTGAACTaGCTGGGGCATCCACAGCAACTCGCTGCACTTGAT | + |
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Preference number: 6 (lower is better) Translates to: QHSLPTVEVPLN*LGHPQQLAALD Trigger: ATCAAGTGCAGCGAGTTGCTGTGGATGCCCCAGTCAGTTCAGTGGCACTTCGACAGTTGGGAGGCTATGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS CAA 90 bp | GTATTTCTTCACACTGTGATCAGGAAAGAGGGAGTACAAGGACCCTaGGTGCCGCTCAAGAACAGCTGGGGCCGTTTCCTCAGCCATGGT | + |
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Preference number: 6 (lower is better) Translates to: VFLHTVIRKEGVQGP*VPLKNSWGRFLSHG Trigger: ACCATGGCTGAGGAAACGGCCCCAGCTGTTCTTGAGCGGCACCAAGGGTCCTTGTACTCCCTCTTTCCTGATCACAGTGTGAAGAAATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS CCA 72 bp | TTTCCCAGTTCAAAGCACAGAACTTGGTTCCAATGGTaGCAACATAGCCTCCCAACTGTCGAAGTGCCACTG | + |
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Preference number: 6 (lower is better) Translates to: FPSSKHRTWFQW*QHSLPTVEVPL Trigger: CAGTGGCACTTCGACAGTTGGGAGGCTATGTTGCCACCATTGGAACCAAGTTCTGTGCTTTGAACTGGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS CCA 72 bp | GATTTTCCCAGTTCAAAGCACAGAACTTGGTTCCAATaGTGGCAACATAGCCTCCCAACTGTCGAAGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: DFPSSKHRTWFQ*WQHSLPTVEVP Trigger: TGGCACTTCGACAGTTGGGAGGCTATGTTGCCACCATTGGAACCAAGTTCTGTGCTTTGAACTGGGAAAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS TCA 72 bp | GAGATATCCACTTGGTCAAAGTATTTCTTCACACTGTaGTCAGGAAAGAGGGAGTACAAGGACCCTTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: EISTWSKYFFTL*SGKREYKDPWC Trigger: GCACCAAGGGTCCTTGTACTCCCTCTTTCCTGATCACAGTGTGAAGAAATACTTTGACCAAGTGGATATCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS GCA 72 bp | CATGAAGTTGTTTTATCAACAGGCAACTTCACAGTTTaGAGTCTTTTCCCTGTCTCAGGATCCAGGCGAATT | + |
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Preference number: 6 (lower is better) Translates to: HEVVLSTGNFTV*SLFPVSGSRRI Trigger: AATTCGCCTGGATCCTGAGACAGGGAAAAGACTGCAAACTGTGAAGTTGCCTGTTGATAAAACAACTTCATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS CAA 72 bp | GTCCAGGGACCAATCCAAACCATTGGAGATATCCACTaGGTCAAAGTATTTCTTCACACTGTGATCAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: VQGPIQTIGDIH*VKVFLHTVIRK Trigger: TTTCCTGATCACAGTGTGAAGAAATACTTTGACCAAGTGGATATCTCCAATGGTTTGGATTGGTCCCTGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS CAA 90 bp | TCACATACATTTCAGAGTAATCTTTCCCTCCAAAGCAGCATGAAGTaGTTTTATCAACAGGCAACTTCACAGTTTGCAGTCTTTTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SHTFQSNLSLQSSMK*FYQQATSQFAVFSL Trigger: CAGGGAAAAGACTGCAAACTGTGAAGTTGCCTGTTGATAAAACAACTTCATGCTGCTTTGGAGGGAAAGATTACTCTGAAATGTATGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS TCA 72 bp | TTATCTTCATCCACCATGGCTAGGACAAATACTGATTaGTTTTCCCAGTTCAAAGCACAGAACTTGGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: LSSSTMARTNTD*FSQFKAQNLVP Trigger: TGGAACCAAGTTCTGTGCTTTGAACTGGGAAAATCAATCAGTATTTGTCCTAGCCATGGTGGATGAAGATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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| CDS CAA 72 bp | TTTCAGAGTAATCTTTCCCTCCAAAGCAGCATGAAGTaGTTTTATCAACAGGCAACTTCACAGTTTGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: FQSNLSLQSSMK*FYQQATSQFAV Trigger: GACTGCAAACTGTGAAGTTGCCTGTTGATAAAACAACTTCATGCTGCTTTGGAGGGAAAGATTACTCTGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023832.7 |
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