Pregenerated sensors for RGCC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022018Ensembl transcript IDs: ENSMUST00000022595.8
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AATATGCTGCAGGTAGGTAAACAAAGTGAGCTTCACTCTCCGAACTaGCCAGAGATGGGCCCAATGGCTAATGTTATAGTGAACCAAGAA | + |
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Preference number: 1 (lower is better) Translates to: NMLQVGKQSELHSPN*PEMGPMANVIVNQE Trigger: TTCTTGGTTCACTATAACATTAGCCATTGGGCCCATCTCTGGGCAGTTCGGAGAGTGAAGCTCACTTTGTTTACCTACCTGCAGCATATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| 3UTR-3UTR CCA 90 bp | ATGCTGCAGGTAGGTAAACAAAGTGAGCTTCACTCTCCGAACTGCCCAGAGATGATAGTGAACCAAGAATaGCCAGGGGGCAGGAGCCTC | + |
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Preference number: 2 (lower is better) Translates to: MLQVGKQSELHSPNCPEMIVNQE*PGGRSL Trigger: GAGGCTCCTGCCCCCTGGCCATTCTTGGTTCACTAT...CATCTCTGGGCAGTTCGGAGAGTGAAGCTCACTTTGTTTACCTACCTGCAGCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| 3UTR GCA 72 bp | CAGGTAGGTAAACAAAGTGAGCTTCACTCTCCGAACTaGCCAGAGATGGGCCCAATGGCTAATGTTATAGTG | + |
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Preference number: 3 (lower is better) Translates to: QVGKQSELHSPN*PEMGPMANVIV Trigger: CACTATAACATTAGCCATTGGGCCCATCTCTGGGCAGTTCGGAGAGTGAAGCTCACTTTGTTTACCTACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS-3UTR CCA 90 bp | TGCCCTCTCCCACAGCAGATTCTAGTAGCCGATTTGCCAGGTCCTCGGAGCCTTTGGAAGTGGCGCTCGTaGAAGGGCGACGCGAAGTCG | + |
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Preference number: 4 (lower is better) Translates to: CPLPQQILVADLPGPRSLWKWRS*KGDAKS Trigger: CGACTTCGCGTCGCCCTTCCACGAGCGCCACTTCCA...AAGGCTCCGAGGACCTGGCAAATCGGCTACTAGAATCTGCTGTGGGAGAGGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS-3UTR GCA 90 bp | CCCACAGCAGATTCTAGTAGCCGATTTGCCAGGTCCTCGGAGCCTTCTGGACCCTGCTGCGCCGCTTCATaGGCTCTAGGTGCTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: PTADSSSRFARSSEPSGPCCAAS*ALGAPH Trigger: ATGAGGAGCACCTAGAGCGCATGAAGCGGCGCAGCA...GGGTCCAGAAGGCTCCGAGGACCTGGCAAATCGGCTACTAGAATCTGCTGTGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS-3UTR TCA 90 bp | TGCCCTCTCCCACAGCAGATTCTAGTAGCCGATTTGCCAGGTCCTCGGAGCCTTGCTGTCCCTGTACACTaGGTCTGCACTCTCCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: CPLPQQILVADLPGPRSLAVPVH*VCTLRV Trigger: GACTCGGAGAGTGCAGACTCAGTGTACAGGGACAGC...AAGGCTCCGAGGACCTGGCAAATCGGCTACTAGAATCTGCTGTGGGAGAGGGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| 3UTR CAA 72 bp | CTCTGCCCTCTCCCACAGCAGATTCTAGTAGCCGATTaGCCAGGTCCTCGGAGCCTTCTGGACCCCAAACTC | + |
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Preference number: 4 (lower is better) Translates to: LCPLPQQILVAD*PGPRSLLDPKL Trigger: GAGTTTGGGGTCCAGAAGGCTCCGAGGACCTGGCAAATCGGCTACTAGAATCTGCTGTGGGAGAGGGCAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS-3UTR TCA 90 bp | GTAAACAAAGTGAGCTTCACTCTCCGAACTGCCCAGAGATGGGCCCAATGGCTATGGCTTTCCGAGGAGTaGCAGCGGAGGGCAGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: VNKVSFTLRTAQRWAQWLWLSEE*QRRAGE Trigger: CTCTCCTGCCCTCCGCTGTCACTCCTCGGAAAGCCA...TAGCCATTGGGCCCATCTCTGGGCAGTTCGGAGAGTGAAGCTCACTTTGTTTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS-3UTR CCA 90 bp | GATCCTCTGTTGAATATGCTGCAGGTAGGTAAACAAAGTGAGCTTCACTCTCCGGGAGGGCAGGAGAGCTaGAGAGGAGTTGGTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: DPLLNMLQVGKQSELHSPGGQES*RGVGWR Trigger: TCTCCAACCAACTCCTCTCCAGCTCTCCTGCCCTCC...CGGAGAGTGAAGCTCACTTTGTTTACCTACCTGCAGCATATTCAACAGAGGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS-3UTR CCA 90 bp | GATCCTCTGTTGAATATGCTGCAGGTAGGTAAACAAAGTGAGCTTCACTCTCCGTGGAGAGGAGTTGGTTaGAGAATTCAGCTTCTCATC | + |
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Preference number: 4 (lower is better) Translates to: DPLLNMLQVGKQSELHSPWRGVG*RIQLLI Trigger: GATGAGAAGCTGAATTCTCCAACCAACTCCTCTCCA...CGGAGAGTGAAGCTCACTTTGTTTACCTACCTGCAGCATATTCAACAGAGGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS GCA 90 bp | GTCGGCCAGCACCGCGTCGAACTCGCACAGCACGTCGGTCAGGTCTaGAGCGGCCGCGGAGTCCATGGCCGGGGCTGCGGCCGCGACCGC | + |
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Preference number: 5 (lower is better) Translates to: VGQHRVELAQHVGQV*SGRGVHGRGCGRDR Trigger: GCGGTCGCGGCCGCAGCCCCGGCCATGGACTCCGCGGCCGCTGCAGACCTGACCGACGTGCTGTGCGAGTTCGACGCGGTGCTGGCCGAC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS TCA 90 bp | AGAATTCAGCTTCTCATCACTGAAGGTGAAGCTGTCCCTGTACACTaGGTCTGCACTCTCCGAGTCGCTGAAGCCGCTGCTGTCGCTGAC | + |
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Preference number: 5 (lower is better) Translates to: RIQLLITEGEAVPVH*VCTLRVAEAAAVAD Trigger: GTCAGCGACAGCAGCGGCTTCAGCGACTCGGAGAGTGCAGACTCAGTGTACAGGGACAGCTTCACCTTCAGTGATGAGAAGCTGAATTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS-3UTR CAA 90 bp | TCTAGTAGCCGATTTGCCAGGTCCTCGGAGCCTTCTGGACCCCAAACTCCTTGCCTGGAGAGGAGTTGGTaGGAGAATTCAGCTTCTCAT | + |
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Preference number: 5 (lower is better) Translates to: SSSRFARSSEPSGPQTPCLERSW*ENSASH Trigger: ATGAGAAGCTGAATTCTCCAACCAACTCCTCTCCAG...GCAAGGAGTTTGGGGTCCAGAAGGCTCCGAGGACCTGGCAAATCGGCTACTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS CCA 72 bp | GCACGTCGGTCAGGTCTGCAGCGGCCGCGGAGTCCATaGCCGGGGCTGCGGCCGCGACCGCCGCGGGACTGC | + |
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Preference number: 6 (lower is better) Translates to: ARRSGLQRPRSP*PGLRPRPPRDC Trigger: GCAGTCCCGCGGCGGTCGCGGCCGCAGCCCCGGCCATGGACTCCGCGGCCGCTGCAGACCTGACCGACGTGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS GCA 72 bp | CACCGCGTCGAACTCGCACAGCACGTCGGTCAGGTCTaGAGCGGCCGCGGAGTCCATGGCCGGGGCTGCGGC | + |
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Preference number: 6 (lower is better) Translates to: HRVELAQHVGQV*SGRGVHGRGCG Trigger: GCCGCAGCCCCGGCCATGGACTCCGCGGCCGCTGCAGACCTGACCGACGTGCTGTGCGAGTTCGACGCGGTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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| CDS TCA 72 bp | CTTCTCATCACTGAAGGTGAAGCTGTCCCTGTACACTaGGTCTGCACTCTCCGAGTCGCTGAAGCCGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: LLITEGEAVPVH*VCTLRVAEAAA Trigger: AGCAGCGGCTTCAGCGACTCGGAGAGTGCAGACTCAGTGTACAGGGACAGCTTCACCTTCAGTGATGAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022595.8 |
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