RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RFXAP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036615

Ensembl transcript IDs: ENSMUST00000044373.6

Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCTCTCTCTCTCTCGCTCTCGCTCTCTCTTTTGAGACAGGAACTTaGTATGTAGCCCAGGCTGGCTTTGAACTTGGGATCCTCTTGGCT +
Preference number: 1 (lower is better)
Translates to: LSLSLALALSFETGT*YVAQAGFELGILLA
Trigger: AGCCAAGAGGATCCCAAGTTCAAAGCCAGCCTGGGCTACATAGCAAGTTCCTGTCTCAAAAGAGAGAGCGAGAGCGAGAGAGAGAGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR CCA 90 bp GCACTGGCTACAGTGAGAGCTATTCTACCTTCAGGGTCTCCTTTATaGAGAATGACTATAAGCAAACCAACCCTGTCCTGGCCTTGGTGG +
Preference number: 1 (lower is better)
Translates to: ALATVRAILPSGSPL*RMTISKPTLSWPWW
Trigger: CCACCAAGGCCAGGACAGGGTTGGTTTGCTTATAGTCATTCTCCATAAAGGAGACCCTGAAGGTAGAATAGCTCTCACTGTAGCCAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR TCA 90 bp TACCAGTCCTTTCCAGGGCCTCTTGGTGAGAATCGCAGCCCTGGGTaGTTGATATTACTGTTACTTTATGACTTCCACAGAAAGCAACTG +
Preference number: 1 (lower is better)
Translates to: YQSFPGPLGENRSPG*LILLLLYDFHRKQL
Trigger: CAGTTGCTTTCTGTGGAAGTCATAAAGTAACAGTAATATCAATCACCCAGGGCTGCGATTCTCACCAAGAGGCCCTGGAAAGGACTGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR TCA 90 bp GAGAATGACTATAAGCAAACCAACCCTGTCCTGGCCTTGGTGGGCTaGGTACATCTGAACTGTTCACAAAATCAACTGAGGAGACAACCT +
Preference number: 1 (lower is better)
Translates to: ENDYKQTNPVLALVG*VHLNCSQNQLRRQP
Trigger: AGGTTGTCTCCTCAGTTGATTTTGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGGACAGGGTTGGTTTGCTTATAGTCATTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR TCA 90 bp ACCCTGGAGGCACCAACTTTAGTGTCCTCTCTTTCTCCAGTTACATaGAGAGACAGATCAGTGACCACTTTCCTCACAGGTATAAAGATG +
Preference number: 1 (lower is better)
Translates to: TLEAPTLVSSLSPVT*RDRSVTTFLTGIKM
Trigger: CATCTTTATACCTGTGAGGAAAGTGGTCACTGATCTGTCTCTTCATGTAACTGGAGAAAGAGAGGACACTAAAGTTGGTGCCTCCAGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR-3UTR TCA 90 bp TGTGGTGGTAAGGGTGGGGAGTGGGCTGAGGGCCTTGCACATGCTAGGCAGGTGAATCGCAGCCCTGGGTaGTTGATATTACTGTTACTT +
Preference number: 2 (lower is better)
Translates to: CGGKGGEWAEGLAHARQVNRSPG*LILLLL
Trigger: AAGTAACAGTAATATCAATCACCCAGGGCTGCGATT...CACCTGCCTAGCATGTGCAAGGCCCTCAGCCCACTCCCCACCCTTACCACCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR-3UTR TCA 90 bp GGGCTGAGGGCCTTGCACATGCTAGGCAGGTGCAGTAAGGCTAAGCTGCATCCGTTTCAGAGCTCCACCTaGACTACACAGAAAGGTTAC +
Preference number: 2 (lower is better)
Translates to: GLRALHMLGRCSKAKLHPFQSST*TTQKGY
Trigger: GTAACCTTTCTGTGTAGTTCAGGTGGAGCTCTGAAA...CGGATGCAGCTTAGCCTTACTGCACCTGCCTAGCATGTGCAAGGCCCTCAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR-3UTR CCA 90 bp TGTGGTGGTAAGGGTGGGGAGTGGGCTGAGGGCCTTGCACATGCTAGGCAGGTGAACTTGGGATCCTCTTaGCTCAGTTTTCCAAGTTCA +
Preference number: 2 (lower is better)
Translates to: CGGKGGEWAEGLAHARQVNLGSS*LSFPSS
Trigger: TGAACTTGGAAAACTGAGCCAAGAGGATCCCAAGTT...CACCTGCCTAGCATGTGCAAGGCCCTCAGCCCACTCCCCACCCTTACCACCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR-3UTR TCA 90 bp CCTGGCCTTGGTGGGCTGAGTACATCTGAACTGTTCACAAAATCAACTGAGGAGTGCTTTAAAGGAGAGTaGCCCCCAACCCTGGAGGCA +
Preference number: 2 (lower is better)
Translates to: PGLGGLSTSELFTKSTEECFKGE*PPTLEA
Trigger: TGCCTCCAGGGTTGGGGGTCACTCTCCTTTAAAGCA...CTCCTCAGTTGATTTTGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR-3UTR GCA 90 bp TGTGGTGGTAAGGGTGGGGAGTGGGCTGAGGGCCTTGCACATGCTAGGCAGGTGGTAGCTAGGAATAAGTaGTCAGTTTTGAAAAGCACT +
Preference number: 2 (lower is better)
Translates to: CGGKGGEWAEGLAHARQVVARNK*SVLKST
Trigger: AGTGCTTTTCAAAACTGAGCACTTATTCCTAGCTAC...CACCTGCCTAGCATGTGCAAGGCCCTCAGCCCACTCCCCACCCTTACCACCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR-3UTR TCA 90 bp GCAAACCAACCCTGTCCTGGCCTTGGTGGGCTGAGTACATCTGAACTGTTCACAGAAGAGACAGATCAGTaGCCACTTTCCTCACAGGTA +
Preference number: 2 (lower is better)
Translates to: ANQPCPGLGGLSTSELFTEETDQ*PLSSQV
Trigger: TACCTGTGAGGAAAGTGGTCACTGATCTGTCTCTTC...TGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGGACAGGGTTGGTTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR-3UTR CCA 90 bp GCAAACCAACCCTGTCCTGGCCTTGGTGGGCTGAGTACATCTGAACTGTTCACATCCACAGAAAGCAACTaGCTCATTCGCTTCAGTAGG +
Preference number: 2 (lower is better)
Translates to: ANQPCPGLGGLSTSELFTSTESN*LIRFSR
Trigger: CCTACTGAAGCGAATGAGCCAGTTGCTTTCTGTGGA...TGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGGACAGGGTTGGTTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR CCA 72 bp GACCCTCACTACAGCCTCGCTAGGTCAAGGTCACTGTaGCAGCCCAAAACATACCAGTCCTTTCCAGGGCCT +
Preference number: 3 (lower is better)
Translates to: DPHYSLARSRSL*QPKTYQSFPGP
Trigger: AGGCCCTGGAAAGGACTGGTATGTTTTGGGCTGCCACAGTGACCTTGACCTAGCGAGGCTGTAGTGAGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR CCA 72 bp CGGAGACGCACTGACGGCAAGGGAACATTTAGCTGGTaGAATACCACAGACTGCAGAAGGTTACGATTTCTG +
Preference number: 3 (lower is better)
Translates to: RRRTDGKGTFSW*NTTDCRRLRFL
Trigger: CAGAAATCGTAACCTTCTGCAGTCTGTGGTATTCCACCAGCTAAATGTTCCCTTGCCGTCAGTGCGTCTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR TCA 72 bp GCCCAAAACATACCAGTCCTTTCCAGGGCCTCTTGGTaGGAATCGCAGCCCTGGGTGATTGATATTACTGTT +
Preference number: 3 (lower is better)
Translates to: AQNIPVLSRASW*ESQPWVIDITV
Trigger: AACAGTAATATCAATCACCCAGGGCTGCGATTCTCACCAAGAGGCCCTGGAAAGGACTGGTATGTTTTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR TCA 72 bp TATAAGCAAACCAACCCTGTCCTGGCCTTGGTGGGCTaGGTACATCTGAACTGTTCACAAAATCAACTGAGG +
Preference number: 3 (lower is better)
Translates to: YKQTNPVLALVG*VHLNCSQNQLR
Trigger: CCTCAGTTGATTTTGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGGACAGGGTTGGTTTGCTTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR TCA 72 bp TTTCCAGGGCCTCTTGGTGAGAATCGCAGCCCTGGGTaGTTGATATTACTGTTACTTTATGACTTCCACAGA +
Preference number: 3 (lower is better)
Translates to: FPGPLGENRSPG*LILLLLYDFHR
Trigger: TCTGTGGAAGTCATAAAGTAACAGTAATATCAATCACCCAGGGCTGCGATTCTCACCAAGAGGCCCTGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR TCA 72 bp GCACCAACTTTAGTGTCCTCTCTTTCTCCAGTTACATaGAGAGACAGATCAGTGACCACTTTCCTCACAGGT +
Preference number: 3 (lower is better)
Translates to: APTLVSSLSPVT*RDRSVTTFLTG
Trigger: ACCTGTGAGGAAAGTGGTCACTGATCTGTCTCTTCATGTAACTGGAGAAAGAGAGGACACTAAAGTTGGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR-3UTR CAA 90 bp TGTTACTTTATGACTTCCACAGAAAGCAACTGGCTCATTCGCTTCAGTAGGCATGAACTTGGGATCCTCTaGGCTCAGTTTTCCAAGTTC +
Preference number: 3 (lower is better)
Translates to: CYFMTSTESNWLIRFSRHELGIL*AQFSKF
Trigger: GAACTTGGAAAACTGAGCCAAGAGGATCCCAAGTTC...ATGCCTACTGAAGCGAATGAGCCAGTTGCTTTCTGTGGAAGTCATAAAGTAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CCA 90 bp TGTGGTGGTAAGGGTGGGGAGTGGGCTGAGGGCCTTGCACATGCTAGGCAGGTGGCTTGGCCACCTGGCTaGTGGTCTCGCGGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: CGGKGGEWAEGLAHARQVAWPPG*WSRGSP
Trigger: AGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGC...CACCTGCCTAGCATGTGCAAGGCCCTCAGCCCACTCCCCACCCTTACCACCACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR CAA 72 bp CTTGTGGTGGTAAGGGTGGGGAGTGGGCTGAGGGCCTaGCACATGCTAGGCAGGTGCAGTAAGGCTAAGCTG +
Preference number: 4 (lower is better)
Translates to: LVVVRVGSGLRA*HMLGRCSKAKL
Trigger: CAGCTTAGCCTTACTGCACCTGCCTAGCATGTGCAAGGCCCTCAGCCCACTCCCCACCCTTACCACCACAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR GCA 90 bp TGTGGTGGTAAGGGTGGGGAGTGGGCTGAGGGCCTTGCACATGCTAGGCAGGTGGGCGCTCCTGGGAAATaGTGCTGTCTTTGCTCCAAA +
Preference number: 4 (lower is better)
Translates to: CGGKGGEWAEGLAHARQVGAPGK*CCLCSK
Trigger: TTTGGAGCAAAGACAGCAGCATTTCCCAGGAGCGCC...CACCTGCCTAGCATGTGCAAGGCCCTCAGCCCACTCCCCACCCTTACCACCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CCA 90 bp GATTACCAGCACTGTCTTAGGCTGAAAGCACCCATGCATCGCAGTAAGGTAGCGTGGCCACCTGGCTGGTaGTCTCGCGGCAGCCCTCGT +
Preference number: 4 (lower is better)
Translates to: DYQHCLRLKAPMHRSKVAWPPGW*SRGSPR
Trigger: ACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCA...CGCTACCTTACTGCGATGCATGGGTGCTTTCAGCCTAAGACAGTGCTGGTAATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR GCA 90 bp GCAAACCAACCCTGTCCTGGCCTTGGTGGGCTGAGTACATCTGAACTGTTCACAATCCAGGGCTTGCGCTaGTTGGCCACCTGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: ANQPCPGLGGLSTSELFTIQGLR*LATWLV
Trigger: CACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGAT...TGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGGACAGGGTTGGTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR GCA 90 bp TGTGGTGGTAAGGGTGGGGAGTGGGCTGAGGGCCTTGCACATGCTAGGCAGGTGTACATCTTGTTGCGGTaGTTCTTGCACATCCAGGGC +
Preference number: 4 (lower is better)
Translates to: CGGKGGEWAEGLAHARQVYILLR*FLHIQG
Trigger: GCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTA...CACCTGCCTAGCATGTGCAAGGCCCTCAGCCCACTCCCCACCCTTACCACCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CCA 90 bp CCTGGCCTTGGTGGGCTGAGTACATCTGAACTGTTCACAAAATCAACTGAGGAGCGCTGCTTGGCCACCTaGCTGGTGGTCTCGCGGCAG +
Preference number: 4 (lower is better)
Translates to: PGLGGLSTSELFTKSTEERCLAT*LVVSRQ
Trigger: CTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCG...CTCCTCAGTTGATTTTGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CCA 90 bp GGGCTGAGGGCCTTGCACATGCTAGGCAGGTGCAGTAAGGCTAAGCTGCATCCGTCACACTGGCGCTCCTaGGAAATGCTGCTGTCTTTG +
Preference number: 4 (lower is better)
Translates to: GLRALHMLGRCSKAKLHPSHWRS*EMLLSL
Trigger: CAAAGACAGCAGCATTTCCCAGGAGCGCCAGTGTGA...CGGATGCAGCTTAGCCTTACTGCACCTGCCTAGCATGTGCAAGGCCCTCAGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR TCA 90 bp GGGCTGAGGGCCTTGCACATGCTAGGCAGGTGCAGTAAGGCTAAGCTGCATCCGTGCTCCAAAACTTGCTaGTTTAGTAGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GLRALHMLGRCSKAKLHPCSKTC*FSSCCC
Trigger: GCAGCAGCAGCTACTAAATCAGCAAGTTTTGGAGCA...CGGATGCAGCTTAGCCTTACTGCACCTGCCTAGCATGTGCAAGGCCCTCAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR GCA 90 bp TTTGAACTTGGGATCCTCTTGGCTCAGTTTTCCAAGTTCAGGGGTTCCAGGTGTTGCACATCCAGGGCTTaGGCTGCTTGGCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: FELGILLAQFSKFRGSRCCTSRA*AAWPPG
Trigger: GCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCA...ACACCTGGAACCCCTGAACTTGGAAAACTGAGCCAAGAGGATCCCAAGTTCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR TCA 90 bp CCTGGCCTTGGTGGGCTGAGTACATCTGAACTGTTCACAAAATCAACTGAGGAGTGCTTTCCTCCAGTTTaGCGTTGCCTGTGCTGGCCG +
Preference number: 4 (lower is better)
Translates to: PGLGGLSTSELFTKSTEECFPPV*RCLCWP
Trigger: CGGCCAGCACAGGCAACGTCAAACTGGAGGAAAGCA...CTCCTCAGTTGATTTTGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR GCA 90 bp TTTGAACTTGGGATCCTCTTGGCTCAGTTTTCCAAGTTCAGGGGTTCCAGGTGTGCCGCCAGAGCCCAGTaGCTGGTCGCTCTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: FELGILLAQFSKFRGSRCAARAQ*LVALLL
Trigger: AAGAAGAAGAGCGACCAGGCACTGGGCTCTGGCGGC...ACACCTGGAACCCCTGAACTTGGAAAACTGAGCCAAGAGGATCCCAAGTTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR GCA 90 bp TATTACTGTTACTTTATGACTTCCACAGAAAGCAACTGGCTCATTCGCTTCAGTTCTTGGAGCCTCGCCTaGGCGCTGCGCCGCCACCCT +
Preference number: 4 (lower is better)
Translates to: YYCYFMTSTESNWLIRFSSWSLA*ALRRHP
Trigger: AGGGTGGCGGCGCAGCGCGCAGGCGAGGCTCCAAGA...ACTGAAGCGAATGAGCCAGTTGCTTTCTGTGGAAGTCATAAAGTAACAGTAATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR CAA 72 bp TATGTAGCCCAGGCTGGCTTTGAACTTGGGATCCTCTaGGCTCAGTTTTCCAAGTTCAGGGGTTCCAGGTGT +
Preference number: 4 (lower is better)
Translates to: YVAQAGFELGIL*AQFSKFRGSRC
Trigger: ACACCTGGAACCCCTGAACTTGGAAAACTGAGCCAAGAGGATCCCAAGTTCAAAGCCAGCCTGGGCTACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR GCA 90 bp CCTGGCCTTGGTGGGCTGAGTACATCTGAACTGTTCACAAAATCAACTGAGGAGGCTCCTGGGAAATGCTaGTGTCTTTGCTCCAAAACT +
Preference number: 4 (lower is better)
Translates to: PGLGGLSTSELFTKSTEEAPGKC*CLCSKT
Trigger: AGTTTTGGAGCAAAGACAGCAGCATTTCCCAGGAGC...CTCCTCAGTTGATTTTGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CCA 90 bp TATTACTGTTACTTTATGACTTCCACAGAAAGCAACTGGCTCATTCGCTTCAGTCCAGAGCCCAGTGCCTaGTCGCTCTTCTTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: YYCYFMTSTESNWLIRFSPEPSA*SLFFFL
Trigger: CAAGAAGAAGAAGAGCGACCAGGCACTGGGCTCTGG...ACTGAAGCGAATGAGCCAGTTGCTTTCTGTGGAAGTCATAAAGTAACAGTAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR GCA 90 bp TGTTACTTTATGACTTCCACAGAAAGCAACTGGCTCATTCGCTTCAGTAGGCATCCTTGTACATCTTGTTaGGGTGCTTCTTGCACATCC +
Preference number: 4 (lower is better)
Translates to: CYFMTSTESNWLIRFSRHPCTSC*GASCTS
Trigger: GGATGTGCAAGAAGCACCGCAACAAGATGTACAAGG...ATGCCTACTGAAGCGAATGAGCCAGTTGCTTTCTGTGGAAGTCATAAAGTAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CCA 90 bp TTTGAACTTGGGATCCTCTTGGCTCAGTTTTCCAAGTTCAGGGGTTCCAGGTGTTGCTTCTGTAAAAACTaGACAACTTCTGGACTTCTT +
Preference number: 4 (lower is better)
Translates to: FELGILLAQFSKFRGSRCCFCKN*TTSGLL
Trigger: AAGAAGTCCAGAAGTTGTCCAGTTTTTACAGAAGCA...ACACCTGGAACCCCTGAACTTGGAAAACTGAGCCAAGAGGATCCCAAGTTCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
3UTR CAA 72 bp GTTCCTTTAACAGTAGCTAGGAATAAGTGCTCAGTTTaGAAAAGCACTGGCTACAGTGAGAGCTATTCTACC +
Preference number: 4 (lower is better)
Translates to: VPLTVARNKCSV*KSTGYSESYST
Trigger: GGTAGAATAGCTCTCACTGTAGCCAGTGCTTTTCAAAACTGAGCACTTATTCCTAGCTACTGTTAAAGGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 90 bp CCCGCCAGGCCCGGCCTCAGAGCGCCGTCCGCCTCGGCCTCGTCCTaGCGCATCACCAGCACCGTCACCGGAGGGGCCGTCCGGGGACTG +
Preference number: 5 (lower is better)
Translates to: PARPGLRAPSASASS*RITSTVTGGAVRGL
Trigger: CAGTCCCCGGACGGCCCCTCCGGTGACGGTGCTGGTGATGCGGCAGGACGAGGCCGAGGCGGACGGCGCTCTGAGGCCGGGCCTGGCGGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 90 bp GCGGCAGCCCTCGTACGTGCAGGTCTTGGAGCCTCGCCTGCGCGCTaGGCCGCCACCCTCCGCGTCCTCGTCCTCCAGCTCCTCCGGGCT +
Preference number: 5 (lower is better)
Translates to: AAALVRAGLGASPAR*AATLRVLVLQLLRA
Trigger: AGCCCGGAGGAGCTGGAGGACGAGGACGCGGAGGGTGGCGGCGCAGCGCGCAGGCGAGGCTCCAAGACCTGCACGTACGAGGGCTGCCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 90 bp GCTGCTTGGCCACCTGGCTGGTGGTCTCGCGGCAGCCCTCGTACGTaGAGGTCTTGGAGCCTCGCCTGCGCGCTGCGCCGCCACCCTCCG +
Preference number: 5 (lower is better)
Translates to: AAWPPGWWSRGSPRT*RSWSLACALRRHPP
Trigger: CGGAGGGTGGCGGCGCAGCGCGCAGGCGAGGCTCCAAGACCTGCACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 90 bp TGGTCTCGCGGCAGCCCTCGTACGTGCAGGTCTTGGAGCCTCGCCTaGGCGCTGCGCCGCCACCCTCCGCGTCCTCGTCCTCCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: WSRGSPRTCRSWSLA*ALRRHPPRPRPPAP
Trigger: AGGAGCTGGAGGACGAGGACGCGGAGGGTGGCGGCGCAGCGCGCAGGCGAGGCTCCAAGACCTGCACGTACGAGGGCTGCCGCGAGACCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CCA 90 bp GCTTCTTGCACATCCAGGGCTTGCGCTGCTTGGCCACCTGGCTGGTaGTCTCGCGGCAGCCCTCGTACGTGCAGGTCTTGGAGCCTCGCC +
Preference number: 5 (lower is better)
Translates to: ASCTSRACAAWPPGW*SRGSPRTCRSWSLA
Trigger: GGCGAGGCTCCAAGACCTGCACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CCA 90 bp GGTGCTTCTTGCACATCCAGGGCTTGCGCTGCTTGGCCACCTGGCTaGTGGTCTCGCGGCAGCCCTCGTACGTGCAGGTCTTGGAGCCTC +
Preference number: 5 (lower is better)
Translates to: GASCTSRACAAWPPG*WSRGSPRTCRSWSL
Trigger: GAGGCTCCAAGACCTGCACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CCA 90 bp TTGCGGTGCTTCTTGCACATCCAGGGCTTGCGCTGCTTGGCCACCTaGCTGGTGGTCTCGCGGCAGCCCTCGTACGTGCAGGTCTTGGAG +
Preference number: 5 (lower is better)
Translates to: LRCFLHIQGLRCLAT*LVVSRQPSYVQVLE
Trigger: CTCCAAGACCTGCACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CCA 90 bp ACATCTTGTTGCGGTGCTTCTTGCACATCCAGGGCTTGCGCTGCTTaGCCACCTGGCTGGTGGTCTCGCGGCAGCCCTCGTACGTGCAGG +
Preference number: 5 (lower is better)
Translates to: TSCCGASCTSRACAA*PPGWWSRGSPRTCR
Trigger: CCTGCACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CAA 90 bp TGTGGTGGTAAGGGTGGGGAGTGGGCTGAGGGCCTTGCACATGCTAGGCAGGTGTTGCACATCCAGGGCTaGCGCTGCTTGGCCACCTGG +
Preference number: 5 (lower is better)
Translates to: CGGKGGEWAEGLAHARQVLHIQG*RCLATW
Trigger: CCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAA...CACCTGCCTAGCATGTGCAAGGCCCTCAGCCCACTCCCCACCCTTACCACCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 90 bp TTGTACATCTTGTTGCGGTGCTTCTTGCACATCCAGGGCTTGCGCTaGTTGGCCACCTGGCTGGTGGTCTCGCGGCAGCCCTCGTACGTG +
Preference number: 5 (lower is better)
Translates to: LYILLRCFLHIQGLR*LATWLVVSRQPSYV
Trigger: CACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CCA 90 bp ACGTTGCCTGTGCTGGCCGCGGACGGGCCGCCAGAGCCCAGTGCCTaGTCGCTCTTCTTCTTCTTGTACTTGTCCTTGTACATCTTGTTG +
Preference number: 5 (lower is better)
Translates to: TLPVLAADGPPEPSA*SLFFFLYLSLYILL
Trigger: CAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGACCAGGCACTGGGCTCTGGCGGCCCGTCCGCGGCCAGCACAGGCAACGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CAA 90 bp GATTACCAGCACTGTCTTAGGCTGAAAGCACCCATGCATCGCAGTAAGGTAGCGTCCTCCAGTTTGACGTaGCCTGTGCTGGCCGCGGAC +
Preference number: 5 (lower is better)
Translates to: DYQHCLRLKAPMHRSKVASSSLT*PVLAAD
Trigger: GTCCGCGGCCAGCACAGGCAACGTCAAACTGGAGGA...CGCTACCTTACTGCGATGCATGGGTGCTTTCAGCCTAAGACAGTGCTGGTAATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CAA 90 bp TGTGGTGGTAAGGGTGGGGAGTGGGCTGAGGGCCTTGCACATGCTAGGCAGGTGTCGCTCTTCTTCTTCTaGTACTTGTCCTTGTACATC +
Preference number: 5 (lower is better)
Translates to: CGGKGGEWAEGLAHARQVSLFFF*YLSLYI
Trigger: GATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGA...CACCTGCCTAGCATGTGCAAGGCCCTCAGCCCACTCCCCACCCTTACCACCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 90 bp TCGCTCTTCTTCTTCTTGTACTTGTCCTTGTACATCTTGTTGCGGTaGTTCTTGCACATCCAGGGCTTGCGCTGCTTGGCCACCTGGCTG +
Preference number: 5 (lower is better)
Translates to: SLFFFLYLSLYILLR*FLHIQGLRCLATWL
Trigger: CAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 90 bp CCTGGTCGCTCTTCTTCTTCTTGTACTTGTCCTTGTACATCTTGTTaGGGTGCTTCTTGCACATCCAGGGCTTGCGCTGCTTGGCCACCT +
Preference number: 5 (lower is better)
Translates to: PGRSSSSCTCPCTSC*GASCTSRACAAWPP
Trigger: AGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGACCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CAA 90 bp GGGCTGAGGGCCTTGCACATGCTAGGCAGGTGCAGTAAGGCTAAGCTGCATCCGGATCCTGTTCTCTGTTaGACAATGGAGAGTATGTTG +
Preference number: 5 (lower is better)
Translates to: GLRALHMLGRCSKAKLHPDPVLC*TMESML
Trigger: CAACATACTCTCCATTGTCAAACAGAGAACAGGATC...CGGATGCAGCTTAGCCTTACTGCACCTGCCTAGCATGTGCAAGGCCCTCAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CAA 90 bp TATTACTGTTACTTTATGACTTCCACAGAAAGCAACTGGCTCATTCGCTTCAGTTTGTTGCGGTGCTTCTaGCACATCCAGGGCTTGCGC +
Preference number: 5 (lower is better)
Translates to: YYCYFMTSTESNWLIRFSLLRCF*HIQGLR
Trigger: GCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAA...ACTGAAGCGAATGAGCCAGTTGCTTTCTGTGGAAGTCATAAAGTAACAGTAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CAA 90 bp TTTGAACTTGGGATCCTCTTGGCTCAGTTTTCCAAGTTCAGGGGTTCCAGGTGTTTCTTGTACTTGTCCTaGTACATCTTGTTGCGGTGC +
Preference number: 5 (lower is better)
Translates to: FELGILLAQFSKFRGSRCFLYLS*YILLRC
Trigger: GCACCGCAACAAGATGTACAAGGACAAGTACAAGAA...ACACCTGGAACCCCTGAACTTGGAAAACTGAGCCAAGAGGATCCCAAGTTCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CAA 90 bp CCTGGCCTTGGTGGGCTGAGTACATCTGAACTGTTCACAAAATCAACTGAGGAGGAAATGCTGCTGTCTTaGCTCCAAAACTTGCTGATT +
Preference number: 5 (lower is better)
Translates to: PGLGGLSTSELFTKSTEEEMLLS*LQNLLI
Trigger: AATCAGCAAGTTTTGGAGCAAAGACAGCAGCATTTC...CTCCTCAGTTGATTTTGTGAACAGTTCAGATGTACTCAGCCCACCAAGGCCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CAA 90 bp TGTTACTTTATGACTTCCACAGAAAGCAACTGGCTCATTCGCTTCAGTAGGCATTTGTCCTTGTACATCTaGTTGCGGTGCTTCTTGCAC +
Preference number: 5 (lower is better)
Translates to: CYFMTSTESNWLIRFSRHLSLYI*LRCFLH
Trigger: GTGCAAGAAGCACCGCAACAAGATGTACAAGGACAA...ATGCCTACTGAAGCGAATGAGCCAGTTGCTTTCTGTGGAAGTCATAAAGTAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS-3UTR CAA 90 bp TATTACTGTTACTTTATGACTTCCACAGAAAGCAACTGGCTCATTCGCTTCAGTTCCTTGTACATCTTGTaGCGGTGCTTCTTGCACATC +
Preference number: 5 (lower is better)
Translates to: YYCYFMTSTESNWLIRFSSLYIL*RCFLHI
Trigger: GATGTGCAAGAAGCACCGCAACAAGATGTACAAGGA...ACTGAAGCGAATGAGCCAGTTGCTTTCTGTGGAAGTCATAAAGTAACAGTAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 72 bp GGCAGCCCTCGTACGTGCAGGTCTTGGAGCCTCGCCTaGGCGCTGCGCCGCCACCCTCCGCGTCCTCGTCCT +
Preference number: 6 (lower is better)
Translates to: GSPRTCRSWSLA*ALRRHPPRPRP
Trigger: AGGACGAGGACGCGGAGGGTGGCGGCGCAGCGCGCAGGCGAGGCTCCAAGACCTGCACGTACGAGGGCTGCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CCA 72 bp TGGTGGTCTCGCGGCAGCCCTCGTACGTGCAGGTCTTaGAGCCTCGCCTGCGCGCTGCGCCGCCACCCTCCG +
Preference number: 6 (lower is better)
Translates to: WWSRGSPRTCRS*SLACALRRHPP
Trigger: CGGAGGGTGGCGGCGCAGCGCGCAGGCGAGGCTCCAAGACCTGCACGTACGAGGGCTGCCGCGAGACCACCA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CCA 72 bp TGCACATCCAGGGCTTGCGCTGCTTGGCCACCTGGCTaGTGGTCTCGCGGCAGCCCTCGTACGTGCAGGTCT +
Preference number: 6 (lower is better)
Translates to: CTSRACAAWPPG*WSRGSPRTCRS
Trigger: AGACCTGCACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 72 bp TTGCGGTGCTTCTTGCACATCCAGGGCTTGCGCTGCTaGGCCACCTGGCTGGTGGTCTCGCGGCAGCCCTCG +
Preference number: 6 (lower is better)
Translates to: LRCFLHIQGLRC*ATWLVVSRQPS
Trigger: CGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 72 bp TTGTTGCGGTGCTTCTTGCACATCCAGGGCTTGCGCTaGTTGGCCACCTGGCTGGTGGTCTCGCGGCAGCCC +
Preference number: 6 (lower is better)
Translates to: LLRCFLHIQGLR*LATWLVVSRQP
Trigger: GGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CCA 72 bp TTCTTGCACATCCAGGGCTTGCGCTGCTTGGCCACCTaGCTGGTGGTCTCGCGGCAGCCCTCGTACGTGCAG +
Preference number: 6 (lower is better)
Translates to: FLHIQGLRCLAT*LVVSRQPSYVQ
Trigger: CTGCACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 90 bp TACATCTTGTTGCGGTGCTTCTTGCACATCCAGGGCTTGCGCTGCTaGGCCACCTGGCTGGTGGTCTCGCGGCAGCCCTCGTACGTGCAG +
Preference number: 6 (lower is better)
Translates to: YILLRCFLHIQGLRC*ATWLVVSRQPSYVQ
Trigger: CTGCACGTACGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CCA 72 bp GTGCTGGCCGCGGACGGGCCGCCAGAGCCCAGTGCCTaGTCGCTCTTCTTCTTCTTGTACTTGTCCTTGTAC +
Preference number: 6 (lower is better)
Translates to: VLAADGPPEPSA*SLFFFLYLSLY
Trigger: GTACAAGGACAAGTACAAGAAGAAGAAGAGCGACCAGGCACTGGGCTCTGGCGGCCCGTCCGCGGCCAGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 90 bp TTGTCCTTGTACATCTTGTTGCGGTGCTTCTTGCACATCCAGGGCTaGCGCTGCTTGGCCACCTGGCTGGTGGTCTCGCGGCAGCCCTCG +
Preference number: 6 (lower is better)
Translates to: LSLYILLRCFLHIQG*RCLATWLVVSRQPS
Trigger: CGAGGGCTGCCGCGAGACCACCAGCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 72 bp TGTACTTGTCCTTGTACATCTTGTTGCGGTGCTTCTTaGACATCCAGGGCTTGCGCTGCTTGGCCACCTGGC +
Preference number: 6 (lower is better)
Translates to: CTCPCTSCCGAS*TSRACAAWPPG
Trigger: GCCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 90 bp GCCTGGTCGCTCTTCTTCTTCTTGTACTTGTCCTTGTACATCTTGTaGCGGTGCTTCTTGCACATCCAGGGCTTGCGCTGCTTGGCCACC +
Preference number: 6 (lower is better)
Translates to: AWSLFFFLYLSLYIL*RCFLHIQGLRCLAT
Trigger: GGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGACCAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 90 bp CCAGAGCCCAGTGCCTGGTCGCTCTTCTTCTTCTTGTACTTGTCCTaGTACATCTTGTTGCGGTGCTTCTTGCACATCCAGGGCTTGCGC +
Preference number: 6 (lower is better)
Translates to: PEPSAWSLFFFLYLS*YILLRCFLHIQGLR
Trigger: GCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGACCAGGCACTGGGCTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 72 bp TTGTACTTGTCCTTGTACATCTTGTTGCGGTGCTTCTaGCACATCCAGGGCTTGCGCTGCTTGGCCACCTGG +
Preference number: 6 (lower is better)
Translates to: LYLSLYILLRCF*HIQGLRCLATW
Trigger: CCAGGTGGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 90 bp AGTGCCTGGTCGCTCTTCTTCTTCTTGTACTTGTCCTTGTACATCTaGTTGCGGTGCTTCTTGCACATCCAGGGCTTGCGCTGCTTGGCC +
Preference number: 6 (lower is better)
Translates to: SAWSLFFFLYLSLYI*LRCFLHIQGLRCLA
Trigger: GGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGACCAGGCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 90 bp CGATCACCAAAGGATCCTGTTCTCTGTTTGACAATGGAGAGTATGTaGTCTGTGCTTTCCTCCAGTTTGACGTTGCCTGTGCTGGCCGCG +
Preference number: 6 (lower is better)
Translates to: RSPKDPVLCLTMESM*SVLSSSLTLPVLAA
Trigger: CGCGGCCAGCACAGGCAACGTCAAACTGGAGGAAAGCACAGACAACATACTCTCCATTGTCAAACAGAGAACAGGATCCTTTGGTGATCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 72 bp TTCTTCTTGTACTTGTCCTTGTACATCTTGTTGCGGTaGTTCTTGCACATCCAGGGCTTGCGCTGCTTGGCC +
Preference number: 6 (lower is better)
Translates to: FFLYLSLYILLR*FLHIQGLRCLA
Trigger: GGCCAAGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 72 bp GAGCCCAGTGCCTGGTCGCTCTTCTTCTTCTTGTACTaGTCCTTGTACATCTTGTTGCGGTGCTTCTTGCAC +
Preference number: 6 (lower is better)
Translates to: EPSAWSLFFFLY*SLYILLRCFLH
Trigger: GTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGACCAGGCACTGGGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 72 bp CTCTTCTTCTTCTTGTACTTGTCCTTGTACATCTTGTaGCGGTGCTTCTTGCACATCCAGGGCTTGCGCTGC +
Preference number: 6 (lower is better)
Translates to: LFFFLYLSLYIL*RCFLHIQGLRC
Trigger: GCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 72 bp TCGCTCTTCTTCTTCTTGTACTTGTCCTTGTACATCTaGTTGCGGTGCTTCTTGCACATCCAGGGCTTGCGC +
Preference number: 6 (lower is better)
Translates to: SLFFFLYLSLYI*LRCFLHIQGLR
Trigger: GCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS GCA 72 bp TCTTCTTCTTCTTGTACTTGTCCTTGTACATCTTGTTaGGGTGCTTCTTGCACATCCAGGGCTTGCGCTGCT +
Preference number: 6 (lower is better)
Translates to: SSSSCTCPCTSC*GASCTSRACAA
Trigger: AGCAGCGCAAGCCCTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 72 bp AGTGCCTGGTCGCTCTTCTTCTTCTTGTACTTGTCCTaGTACATCTTGTTGCGGTGCTTCTTGCACATCCAG +
Preference number: 6 (lower is better)
Translates to: SAWSLFFFLYLS*YILLRCFLHIQ
Trigger: CTGGATGTGCAAGAAGCACCGCAACAAGATGTACAAGGACAAGTACAAGAAGAAGAAGAGCGACCAGGCACT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS TCA 72 bp CCTGGGAAATGCTGCTGTCTTTGCTCCAAAACTTGCTaGTTTAGTAGCTGCTGCTGCTTCTGTAAAAACTGG +
Preference number: 6 (lower is better)
Translates to: PGKCCCLCSKTC*FSSCCCFCKNW
Trigger: CCAGTTTTTACAGAAGCAGCAGCAGCTACTAAATCAGCAAGTTTTGGAGCAAAGACAGCAGCATTTCCCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6
CDS CAA 72 bp AAGGATCCTGTTCTCTGTTTGACAATGGAGAGTATGTaGTCTGTGCTTTCCTCCAGTTTGACGTTGCCTGTG +
Preference number: 6 (lower is better)
Translates to: KDPVLCLTMESM*SVLSSSLTLPV
Trigger: CACAGGCAACGTCAAACTGGAGGAAAGCACAGACAACATACTCTCCATTGTCAAACAGAGAACAGGATCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044373.6