Pregenerated sensors for RFPL4B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094311

Ensembl transcript IDs: ENSMUST00000179279.2

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	ATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACCTTGGTCCTCCAATCTTGGTCCACGACATGGGCTaGAGAAATGAATCTTCTGGG	+
Preference number: 4 (lower is better) Translates to: IRSLPSLSAMLYLGPPILVHDMG*RNESSG Trigger: CCCAGAAGATTCATTTCTTCAGCCCATGTCGTGGAC...CAAGATTGGAGGACCAAGGTAAAGCATTGCACTAAGACTTGGAAGACTTCTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR TCA 90 bp	ATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACCTTGGTCCTCCAATCTTGTCTTCCACCAAATTATaGCCAGGCTTCCCACCCTTT	+
Preference number: 4 (lower is better) Translates to: IRSLPSLSAMLYLGPPILSSTKL*PGFPPF Trigger: AAAGGGTGGGAAGCCTGGTCATAATTTGGTGGAAGA...CAAGATTGGAGGACCAAGGTAAAGCATTGCACTAAGACTTGGAAGACTTCTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR TCA 90 bp	ATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACCTTGGTCCTCCAATCTTGATCTCAGAAGTCCAGTaGTCTGCCCTTTATGTTGCT	+
Preference number: 4 (lower is better) Translates to: IRSLPSLSAMLYLGPPILISEVQ*SALYVA Trigger: AGCAACATAAAGGGCAGATCACTGGACTTCTGAGAT...CAAGATTGGAGGACCAAGGTAAAGCATTGCACTAAGACTTGGAAGACTTCTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR TCA 90 bp	AGTTCATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACCTTGGTCCTCCAACATGGGCTGAAGAAATaGATCTTCTGGGATCTTCCA	+
Preference number: 4 (lower is better) Translates to: SSSEVFQVLVQCFTLVLQHGLKK*IFWDLP Trigger: TGGAAGATCCCAGAAGATTCATTTCTTCAGCCCATG...TTGGAGGACCAAGGTAAAGCATTGCACTAAGACTTGGAAGACTTCTGATGAACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR TCA 90 bp	CAGGAGTCTATAGAGTTCATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACAGATGTTCCTCCTGCTaGCTGGTTCCTTGCAAATAC	+
Preference number: 4 (lower is better) Translates to: QESIEFIRSLPSLSAMLYRCSSC*LVPCKY Trigger: GTATTTGCAAGGAACCAGTCAGCAGGAGGAACATCT...GTAAAGCATTGCACTAAGACTTGGAAGACTTCTGATGAACTCTATAGACTCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR GCA 90 bp	AGTTCATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACCTTGGTCCTCCAAAATGTCCAGGCAAATTaGACAGGTTGCCTCCATTTC	+
Preference number: 4 (lower is better) Translates to: SSSEVFQVLVQCFTLVLQNVQAN*TGCLHF Trigger: GAAATGGAGGCAACCTGTGCAATTTGCCTGGACATT...TTGGAGGACCAAGGTAAAGCATTGCACTAAGACTTGGAAGACTTCTGATGAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR GCA 90 bp	CAGGAGTCTATAGAGTTCATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACATCTGCCCTTTATGTTaGTTCAGTAAGGGGCCATGC	+
Preference number: 4 (lower is better) Translates to: QESIEFIRSLPSLSAMLYICPLC*FSKGPC Trigger: GCATGGCCCCTTACTGAAGCAACATAAAGGGCAGAT...GTAAAGCATTGCACTAAGACTTGGAAGACTTCTGATGAACTCTATAGACTCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR CCA 90 bp	CAGGAGTCTATAGAGTTCATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACGCTGCTTTAAAAGGATaGCCAGTTCTTTCATTACCC	+
Preference number: 4 (lower is better) Translates to: QESIEFIRSLPSLSAMLYAALKG*PVLSLP Trigger: GGGTAATGAAAGAACTGGCCATCCTTTTAAAGCAGC...GTAAAGCATTGCACTAAGACTTGGAAGACTTCTGATGAACTCTATAGACTCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR CCA 90 bp	CAGGAGTCTATAGAGTTCATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACGAGTTGTCCACGACATaGGCTGAAGAAATGAATCTT	+
Preference number: 4 (lower is better) Translates to: QESIEFIRSLPSLSAMLYELSTT*AEEMNL Trigger: AAGATTCATTTCTTCAGCCCATGTCGTGGACAACTC...GTAAAGCATTGCACTAAGACTTGGAAGACTTCTGATGAACTCTATAGACTCCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR CCA 90 bp	AGTTCATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACCTTGGTCCTCCAAAGGCCAGGGCTTCTATaGTGTCTTTCTGAAATAAAA	+
Preference number: 4 (lower is better) Translates to: SSSEVFQVLVQCFTLVLQRPGLL*CLSEIK Trigger: TTTTATTTCAGAAAGACACCATAGAAGCCCTGGCCT...TTGGAGGACCAAGGTAAAGCATTGCACTAAGACTTGGAAGACTTCTGATGAACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS TCA 90 bp	ACATGGGCTGAAGAAATGAATCTTCTGGGATCTTCCACCAAATTATaGCCAGGCTTCCCACCCTTTAAATCATTAGAGGGTTCCCGGGAG	+
Preference number: 5 (lower is better) Translates to: TWAEEMNLLGSSTKL*PGFPPFKSLEGSRE Trigger: CTCCCGGGAACCCTCTAATGATTTAAAGGGTGGGAAGCCTGGTCATAATTTGGTGGAAGATCCCAGAAGATTCATTTCTTCAGCCCATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS GCA 90 bp	TTCTCTGATACCAATCTCAGAAGTCCAGTGATCTGCCCTTTATGTTaGTTCAGTAAGGGGCCATGCTGCTTTAAAAGGATGGCCAGTTCT	+
Preference number: 5 (lower is better) Translates to: FSDTNLRSPVICPLC*FSKGPCCFKRMASS Trigger: AGAACTGGCCATCCTTTTAAAGCAGCATGGCCCCTTACTGAAGCAACATAAAGGGCAGATCACTGGACTTCTGAGATTGGTATCAGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR CAA 90 bp	ATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACCTTGGTCCTCCAATCTTGGGCAAATTGCACAGGTaGCCTCCATTTCCAAAATGT	+
Preference number: 5 (lower is better) Translates to: IRSLPSLSAMLYLGPPILGKLHR*PPFPKC Trigger: ACATTTTGGAAATGGAGGCAACCTGTGCAATTTGCC...CAAGATTGGAGGACCAAGGTAAAGCATTGCACTAAGACTTGGAAGACTTCTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR CAA 90 bp	AGTTCATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACCTTGGTCCTCCAAAAATGTCCAGGCAAATaGCACAGGTTGCCTCCATTT	+
Preference number: 5 (lower is better) Translates to: SSSEVFQVLVQCFTLVLQKCPGK*HRLPPF Trigger: AAATGGAGGCAACCTGTGCAATTTGCCTGGACATTT...TTGGAGGACCAAGGTAAAGCATTGCACTAAGACTTGGAAGACTTCTGATGAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS TCA 90 bp	GAAAATCCCTACGTGGTAAAGGCCAGGGCTTCTATGGTGTCTTTCTaGAATAAAATTAACTCTGATTTCTCTCGTCTTCTCACCAAGCAA	+
Preference number: 5 (lower is better) Translates to: ENPYVVKARASMVSF*NKINSDFSRLLTKQ Trigger: TTGCTTGGTGAGAAGACGAGAGAAATCAGAGTTAATTTTATTTCAGAAAGACACCATAGAAGCCCTGGCCTTTACCACGTAGGGATTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS-3UTR CAA 90 bp	AGTTCATCAGAAGTCTTCCAAGTCTTAGTGCAATGCTTTACCTTGGTCCTCCAATTTCCCATCACAAACTaGGTTTCTTCCATAGTCAAG	+
Preference number: 5 (lower is better) Translates to: SSSEVFQVLVQCFTLVLQFPITN*VSSIVK Trigger: CTTGACTATGGAAGAAACCAAGTTTGTGATGGGAAA...TTGGAGGACCAAGGTAAAGCATTGCACTAAGACTTGGAAGACTTCTGATGAACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS TCA 72 bp	GGAGTCACCAGTCTTAGCTGCCAGAGCCGTATTCTCTaGTACCAATCTCAGAAGTCCAGTGATCTGCCCTTT	+
Preference number: 6 (lower is better) Translates to: GVTSLSCQSRIL*YQSQKSSDLPF Trigger: AAAGGGCAGATCACTGGACTTCTGAGATTGGTATCAGAGAATACGGCTCTGGCAGCTAAGACTGGTGACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS TCA 72 bp	GAGCCGTATTCTCTGATACCAATCTCAGAAGTCCAGTaGTCTGCCCTTTATGTTGCTTCAGTAAGGGGCCAT	+
Preference number: 6 (lower is better) Translates to: EPYSLIPISEVQ*SALYVASVRGH Trigger: ATGGCCCCTTACTGAAGCAACATAAAGGGCAGATCACTGGACTTCTGAGATTGGTATCAGAGAATACGGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS TCA 72 bp	ACTTATGTTCACGGAGTAAATAGATGTTCCTCCTGCTaGCTGGTTCCTTGCAAATACCTGGAGCCCATTCGT	+
Preference number: 6 (lower is better) Translates to: TYVHGVNRCSSC*LVPCKYLEPIR Trigger: ACGAATGGGCTCCAGGTATTTGCAAGGAACCAGTCAGCAGGAGGAACATCTATTTACTCCGTGAACATAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS GCA 72 bp	GTGATCTGCCCTTTATGTTGCTTCAGTAAGGGGCCATaGTGCTTTAAAAGGATGGCCAGTTCTTTCATTACC	+
Preference number: 6 (lower is better) Translates to: VICPLCCFSKGP*CFKRMASSFIT Trigger: GGTAATGAAAGAACTGGCCATCCTTTTAAAGCAGCATGGCCCCTTACTGAAGCAACATAAAGGGCAGATCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS GCA 72 bp	ACCAATCTCAGAAGTCCAGTGATCTGCCCTTTATGTTaGTTCAGTAAGGGGCCATGCTGCTTTAAAAGGATG	+
Preference number: 6 (lower is better) Translates to: TNLRSPVICPLC*FSKGPCCFKRM Trigger: CATCCTTTTAAAGCAGCATGGCCCCTTACTGAAGCAACATAAAGGGCAGATCACTGGACTTCTGAGATTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS CAA 90 bp	GATGGCCAGTTCTTTCATTACCCCATCATACTTGACAGGTCTCTTTaGTTCTTTTCGACACACGGGACAGGTCATTATCAAGTCTTCTTT	+
Preference number: 6 (lower is better) Translates to: DGQFFHYPIILDRSL*FFSTHGTGHYQVFF Trigger: AAAGAAGACTTGATAATGACCTGTCCCGTGTGTCGAAAAGAACAAAAGAGACCTGTCAAGTATGATGGGGTAATGAAAGAACTGGCCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS TCA 72 bp	GAAGAAATGAATCTTCTGGGATCTTCCACCAAATTATaGCCAGGCTTCCCACCCTTTAAATCATTAGAGGGT	+
Preference number: 6 (lower is better) Translates to: EEMNLLGSSTKL*PGFPPFKSLEG Trigger: ACCCTCTAATGATTTAAAGGGTGGGAAGCCTGGTCATAATTTGGTGGAAGATCCCAGAAGATTCATTTCTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS CAA 72 bp	CTCATAGGTAAAGTCGTTGCTTTTCCCATCACAAACTaGGTTTCTTCCATAGTCAAGGCTAGGAAAATCCCT	+
Preference number: 6 (lower is better) Translates to: LIGKVVAFPITN*VSSIVKARKIP Trigger: AGGGATTTTCCTAGCCTTGACTATGGAAGAAACCAAGTTTGTGATGGGAAAAGCAACGACTTTACCTATGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS TCA 72 bp	TACGTGGTAAAGGCCAGGGCTTCTATGGTGTCTTTCTaGAATAAAATTAACTCTGATTTCTCTCGTCTTCTC	+
Preference number: 6 (lower is better) Translates to: YVVKARASMVSF*NKINSDFSRLL Trigger: GAGAAGACGAGAGAAATCAGAGTTAATTTTATTTCAGAAAGACACCATAGAAGCCCTGGCCTTTACCACGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179279.2
CDS GCA 72 bp	GAGATAAATAGGATGAGAGTAAATGTCCAGGCAAATTaGACAGGTTGCCTCCATTTCCAAAATGTTTTCCAT	+
Preference number: 6 (lower is better) Translates to: EINRMRVNVQAN*TGCLHFQNVFH Trigger: ATGGAAAACATTTTGGAAATGGAGGCAACCTGTGCAATTTGCCTGGACATTTACTCTCATCCTATTTATCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179279.2