Pregenerated sensors for RFPL4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035191Ensembl transcript IDs: ENSMUST00000045215.9, ENSMUST00000179971.8, ENSMUST00000208468.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGTTATaGGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTA | + |
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Preference number: 1 (lower is better) Translates to: FVLHGYQTQKFLARL*VLSDCHSSFHTQGL Trigger: TAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| 3UTR-3UTR CAA 90 bp | TATATAGGTCTCATTTCCCAGTCATTTAGAAAATCAATCACCCTGCTTAGTCACAGGGCCTCTAGTCTCTaGAGGACGGGGCATGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: YIGLISQSFRKSITLLSHRASSL*RTGHGW Trigger: CCACCCATGCCCCGTCCTCAAGAGACTAGAGGCCCT...GTGACTAAGCAGGGTGATTGATTTTCTAAATGACTGGGAAATGAGACCTATATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000179971.8 |
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| 3UTR TCA 72 bp | CATGGGTACCAGACTCAAAAATTCTTAGCTAGGTTATaGGTACTCAGCGACTGTCATAGCAGCTTTCATACC | + |
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Preference number: 3 (lower is better) Translates to: HGYQTQKFLARL*VLSDCHSSFHT Trigger: GGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAGCTAAGAATTTTTGAGTCTGGTACCCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR TCA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATAATGGCGGCCTGAAGTaGACCGGGAAGAGCCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LGYEYSATVIAAFIPKGYNGGLK*TGKSPG Trigger: TCCTGGGCTCTTCCCGGTTCACTTCAGGCCGCCATT...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR TCA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGAATGGCGGCCTGAAGTaGACCGGGAAGAGCCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: FCNAFVLHGYQTQKFLARNGGLK*TGKSPG Trigger: TCCTGGGCTCTTCCCGGTTCACTTCAGGCCGCCATT...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CCA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTTATCCCATTCTTTGCTaGTTCCCACCACTACCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: GYEYSATVIAAFIPKGYFYPILC*FPPLPP Trigger: GGGAGGTAGTGGTGGGAACCAGCAAAGAATGGGATA...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CCA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTGCTGGAGAAAAGAATaGGCGAAATGGATCCGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: LGYEYSATVIAAFIPKGYCWRKE*AKWIRV Trigger: GACACGGATCCATTTCGCCCATTCTTTTCTCCAGCA...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR GCA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATCTATATCCCATTCTTTaGTGGTTCCCACCACTACCT | + |
|
Preference number: 4 (lower is better) Translates to: LGYEYSATVIAAFIPKGYLYPIL*WFPPLP Trigger: AGGTAGTGGTGGGAACCAGCAAAGAATGGGATATAG...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR GCA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATATCTGGATAGGAACTTaGTGGAGAAAAGAATGGGCG | + |
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Preference number: 4 (lower is better) Translates to: LGYEYSATVIAAFIPKGYIWIGT*WRKEWA Trigger: CGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGAT...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CCA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATACACAAGGGGAGGGATaGAATCTTTCTGCACATTTC | + |
|
Preference number: 4 (lower is better) Translates to: LGYEYSATVIAAFIPKGYTQGEG*NLSAHF Trigger: GAAATGTGCAGAAAGATTCCATCCCTCCCCTTGTGT...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CCA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGTATCCCATTCTTTGCTaGTTCCCACCACTACCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: FCNAFVLHGYQTQKFLARYPILC*FPPLPP Trigger: GGGAGGTAGTGGTGGGAACCAGCAAAGAATGGGATA...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CCA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTTGCTGGAGAAAAGAATaGGCGAAATGGATCCGTGTC | + |
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Preference number: 4 (lower is better) Translates to: GYEYSATVIAAFIPKGYFCWRKE*AKWIRV Trigger: GACACGGATCCATTTCGCCCATTCTTTTCTCCAGCA...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CCA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATCCACATCCAAGGTCATaGTTACTTGGTCCATTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LGYEYSATVIAAFIPKGYPHPRS*LLGPLS Trigger: TGACAATGGACCAAGTAACCATGACCTTGGATGTGG...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208468.2 |
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| CDS-3UTR GCA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTGGGATGGAATCTTTCTaGACATTTCTTTCGGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: GYEYSATVIAAFIPKGYFGMESF*TFLSGL Trigger: CAAGCCCGAAAGAAATGTGCAGAAAGATTCCATCCC...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR GCA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTATCTGGATAGGAACTTaGTGGAGAAAAGAATGGGCG | + |
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Preference number: 4 (lower is better) Translates to: GYEYSATVIAAFIPKGYFIWIGT*WRKEWA Trigger: CGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGAT...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR GCA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTCTGGAATTCCGAAAATaGCTGGATTTGTCACAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: GYEYSATVIAAFIPKGYFLEFRK*LDLSQD Trigger: GTCCTGTGACAAATCCAGGCATTTTCGGAATTCCAG...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CCA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTACACAAGGGGAGGGATaGAATCTTTCTGCACATTTC | + |
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Preference number: 4 (lower is better) Translates to: GYEYSATVIAAFIPKGYFTQGEG*NLSAHF Trigger: GAAATGTGCAGAAAGATTCCATCCCTCCCCTTGTGT...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CCA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTGGATAGGAACTTGCTaGAGAAAAGAATGGGCGAAA | + |
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Preference number: 4 (lower is better) Translates to: LGYEYSATVIAAFIPKGYWIGTC*RKEWAK Trigger: TTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCA...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR GCA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGGGGATGGAATCTTTCTaGACATTTCTTTCGGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: FCNAFVLHGYQTQKFLARGMESF*TFLSGL Trigger: CAAGCCCGAAAGAAATGTGCAGAAAGATTCCATCCC...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR GCA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGCTATATCCCATTCTTTaGTGGTTCCCACCACTACCT | + |
|
Preference number: 4 (lower is better) Translates to: FCNAFVLHGYQTQKFLARLYPIL*WFPPLP Trigger: AGGTAGTGGTGGGAACCAGCAAAGAATGGGATATAG...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR GCA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTGGACTCTTTGCAAATaGCTATATCCCATTCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: LGYEYSATVIAAFIPKGYWTLCK*LYPILC Trigger: GCAAAGAATGGGATATAGGCATTTGCAAAGAGTCCA...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CCA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTTGGATAGGAACTTGCTaGAGAAAAGAATGGGCGAAA | + |
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Preference number: 4 (lower is better) Translates to: GYEYSATVIAAFIPKGYFWIGTC*RKEWAK Trigger: TTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCA...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CCA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATAATTCCGAAAATGCCTaGATTTGTCACAGGACAGAT | + |
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Preference number: 4 (lower is better) Translates to: LGYEYSATVIAAFIPKGYNSENA*ICHRTD Trigger: ATCTGTCCTGTGACAAATCCAGGCATTTTCGGAATT...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR GCA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTTGGACTCTTTGCAAATaGCTATATCCCATTCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: GYEYSATVIAAFIPKGYFWTLCK*LYPILC Trigger: GCAAAGAATGGGATATAGGCATTTGCAAAGAGTCCA...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CCA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTAATTCCGAAAATGCCTaGATTTGTCACAGGACAGAT | + |
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Preference number: 4 (lower is better) Translates to: GYEYSATVIAAFIPKGYFNSENA*ICHRTD Trigger: ATCTGTCCTGTGACAAATCCAGGCATTTTCGGAATT...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR GCA 90 bp | TATATAGGTCTCATTTCCCAGTCATTTAGAAAATCAATCACCCTGCTTAGTCACGGGATGGAATCTTTCTaGACATTTCTTTCGGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: YIGLISQSFRKSITLLSHGMESF*TFLSGL Trigger: CAAGCCCGAAAGAAATGTGCAGAAAGATTCCATCCC...GTGACTAAGCAGGGTGATTGATTTTCTAAATGACTGGGAAATGAGACCTATATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179971.8 |
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| CDS-3UTR CCA 90 bp | AACCCAAAACCAAACCAAACCAAACCAAATCAAATGGCATTTCCTGTAACTAGTACACAAGGGGAGGGATaGAATCTTTCTGCACATTTC | + |
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Preference number: 4 (lower is better) Translates to: NPKPNQTKPNQMAFPVTSTQGEG*NLSAHF Trigger: GAAATGTGCAGAAAGATTCCATCCCTCCCCTTGTGT...ACTAGTTACAGGAAATGCCATTTGATTTGGTTTGGTTTGGTTTGGTTTTGGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CCA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGAATTCCGAAAATGCCTaGATTTGTCACAGGACAGAT | + |
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Preference number: 4 (lower is better) Translates to: FCNAFVLHGYQTQKFLARNSENA*ICHRTD Trigger: ATCTGTCCTGTGACAAATCCAGGCATTTTCGGAATT...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CCA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGCCACATCCAAGGTCATaGTTACTTGAAATATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: FCNAFVLHGYQTQKFLARPHPRS*LLEISS Trigger: TGAAGATATTTCAAGTAACCATGACCTTGGATGTGG...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR TCA 90 bp | AACCCAAAACCAAACCAAACCAAACCAAATCAAATGGCATTTCCTGTAACTAGTAAGGTCATGGTTACTTaGAATATCTTCATACCTTGG | + |
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Preference number: 4 (lower is better) Translates to: NPKPNQTKPNQMAFPVTSKVMVT*NIFIPW Trigger: CCAAGGTATGAAGATATTTCAAGTAACCATGACCTT...ACTAGTTACAGGAAATGCCATTTGATTTGGTTTGGTTTGGTTTGGTTTTGGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR TCA 90 bp | TATATAGGTCTCATTTCCCAGTCATTTAGAAAATCAATCACCCTGCTTAGTCACAAGGTCATGGTTACTTaGAATATCTTCATACCTTGG | + |
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Preference number: 4 (lower is better) Translates to: YIGLISQSFRKSITLLSHKVMVT*NIFIPW Trigger: CCAAGGTATGAAGATATTTCAAGTAACCATGACCTT...GTGACTAAGCAGGGTGATTGATTTTCTAAATGACTGGGAAATGAGACCTATATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179971.8 |
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| CDS-3UTR CCA 90 bp | TATATAGGTCTCATTTCCCAGTCATTTAGAAAATCAATCACCCTGCTTAGTCACCCACATCCAAGGTCATaGTTACTTGAAATATCTTCA | + |
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Preference number: 4 (lower is better) Translates to: YIGLISQSFRKSITLLSHPHPRS*LLEISS Trigger: TGAAGATATTTCAAGTAACCATGACCTTGGATGTGG...GTGACTAAGCAGGGTGATTGATTTTCTAAATGACTGGGAAATGAGACCTATATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179971.8 |
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| CDS GCA 90 bp | GAACCGGGAAGAGCCCAGGACACAAGGGGAGGGATGGAATCTTTCTaGACATTTCTTTCGGGCTTGCTTCTGAGGCGTATAGTAGACACT | + |
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Preference number: 5 (lower is better) Translates to: EPGRAQDTRGGMESF*TFLSGLLLRRIVDT Trigger: AGTGTCTACTATACGCCTCAGAAGCAAGCCCGAAAGAAATGTGCAGAAAGATTCCATCCCTCCCCTTGTGTCCTGGGCTCTTCCCGGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS TCA 90 bp | GTACACCGTCCCCTTCAGGACTTTTCTCTAGTGAGTCAAGGCACTTaGGGCAGCAGATGTATCCACAGTTCAAGTACACAGGGCTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: VHRPLQDFSLVSQGT*GSRCIHSSSTQGFP Trigger: TGGAAAGCCCTGTGTACTTGAACTGTGGATACATCTGCTGCCTCAAGTGCCTTGACTCACTAGAGAAAAGTCCTGAAGGGGACGGTGTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CAA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATCAGAATAGACCTTTTTaGCCCTCACACCCACGGTCC | + |
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Preference number: 5 (lower is better) Translates to: LGYEYSATVIAAFIPKGYQNRPF*PSHPRS Trigger: GGACCGTGGGTGTGAGGGCAAAAAAGGTCTATTCTG...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CAA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTAGTGAGTCAAGGCACTaGAGGCAGCAGATGTATCCA | + |
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Preference number: 5 (lower is better) Translates to: GYEYSATVIAAFIPKGYFSESRH*RQQMYP Trigger: TGGATACATCTGCTGCCTCAAGTGCCTTGACTCACT...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CAA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTTGTGGCTCTAGGTTTTaGATCTTGGTAACCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: GYEYSATVIAAFIPKGYFCGSRF*ILVTRA Trigger: GGCCCTGGTTACCAAGATCAAAAACCTAGAGCCACA...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CAA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTCCTATATCCCATTCTTaGCTGGTTCCCACCACTACC | + |
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Preference number: 5 (lower is better) Translates to: GYEYSATVIAAFIPKGYFPISHS*LVPTTT Trigger: GGTAGTGGTGGGAACCAGCAAAGAATGGGATATAGG...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CAA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGCAGAATAGACCTTTTTaGCCCTCACACCCACGGTCC | + |
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Preference number: 5 (lower is better) Translates to: FCNAFVLHGYQTQKFLARQNRPF*PSHPRS Trigger: GGACCGTGGGTGTGAGGGCAAAAAAGGTCTATTCTG...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS CCA 90 bp | ATCACCATCTGGATAGGAACTTGCTGGAGAAAAGAATGGGCGAAATaGATCCGTGTCAGGAATTTCAAGGAATGTATAGATATGGGAGCC | + |
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Preference number: 5 (lower is better) Translates to: ITIWIGTCWRKEWAK*IRVRNFKECIDMGA Trigger: GGCTCCCATATCTATACATTCCTTGAAATTCCTGACACGGATCCATTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGATGGTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS CCA 90 bp | GATACTCAGGACTTGTTCTTGATCACCATCTGGATAGGAACTTGCTaGAGAAAAGAATGGGCGAAATGGATCCGTGTCAGGAATTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: DTQDLFLITIWIGTC*RKEWAKWIRVRNFK Trigger: CTTGAAATTCCTGACACGGATCCATTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGATGGTGATCAAGAACAAGTCCTGAGTATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CAA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGAGTGAGTCAAGGCACTaGAGGCAGCAGATGTATCCA | + |
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Preference number: 5 (lower is better) Translates to: FCNAFVLHGYQTQKFLARSESRH*RQQMYP Trigger: TGGATACATCTGCTGCCTCAAGTGCCTTGACTCACT...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CAA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGTGTGGCTCTAGGTTTTaGATCTTGGTAACCAGGGCC | + |
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Preference number: 5 (lower is better) Translates to: FCNAFVLHGYQTQKFLARCGSRF*ILVTRA Trigger: GGCCCTGGTTACCAAGATCAAAAACCTAGAGCCACA...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CAA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGCCTATATCCCATTCTTaGCTGGTTCCCACCACTACC | + |
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Preference number: 5 (lower is better) Translates to: FCNAFVLHGYQTQKFLARPISHS*LVPTTT Trigger: GGTAGTGGTGGGAACCAGCAAAGAATGGGATATAGG...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CAA 90 bp | GGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATTTTACTCAGGACTTGTTCTaGATCACCATCTGGATAGGA | + |
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Preference number: 5 (lower is better) Translates to: GYEYSATVIAAFIPKGYFTQDLF*ITIWIG Trigger: TCCTATCCAGATGGTGATCAAGAACAAGTCCTGAGT...AAAATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CAA 90 bp | AACCCAAAACCAAACCAAACCAAACCAAATCAAATGGCATTTCCTGTAACTAGTAGTGAGTCAAGGCACTaGAGGCAGCAGATGTATCCA | + |
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Preference number: 5 (lower is better) Translates to: NPKPNQTKPNQMAFPVTSSESRH*RQQMYP Trigger: TGGATACATCTGCTGCCTCAAGTGCCTTGACTCACT...ACTAGTTACAGGAAATGCCATTTGATTTGGTTTGGTTTGGTTTGGTTTTGGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CAA 90 bp | AACCCAAAACCAAACCAAACCAAACCAAATCAAATGGCATTTCCTGTAACTAGTCCTATATCCCATTCTTaGCTGGTTCCCACCACTACC | + |
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Preference number: 5 (lower is better) Translates to: NPKPNQTKPNQMAFPVTSPISHS*LVPTTT Trigger: GGTAGTGGTGGGAACCAGCAAAGAATGGGATATAGG...ACTAGTTACAGGAAATGCCATTTGATTTGGTTTGGTTTGGTTTGGTTTTGGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CAA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGACTCAGGACTTGTTCTaGATCACCATCTGGATAGGA | + |
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Preference number: 5 (lower is better) Translates to: FCNAFVLHGYQTQKFLARTQDLF*ITIWIG Trigger: TCCTATCCAGATGGTGATCAAGAACAAGTCCTGAGT...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS-3UTR CAA 90 bp | CTAGGTTATGAGTACTCAGCGACTGTCATAGCAGCTTTCATACCCAAGGGTTATCAAGGTCATGGTTACTaGGTCCATTGTCAGAATAAA | + |
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Preference number: 5 (lower is better) Translates to: LGYEYSATVIAAFIPKGYQGHGY*VHCQNK Trigger: TTTATTCTGACAATGGACCAAGTAACCATGACCTTG...ATAACCCTTGGGTATGAAAGCTGCTATGACAGTCGCTGAGTACTCATAACCTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208468.2 |
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| CDS CCA 90 bp | TTGTTCTTGATCACCATCTGGATAGGAACTTGCTGGAGAAAAGAATaGGCGAAATGGATCCGTGTCAGGAATTTCAAGGAATGTATAGAT | + |
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Preference number: 5 (lower is better) Translates to: LFLITIWIGTCWRKE*AKWIRVRNFKECID Trigger: ATCTATACATTCCTTGAAATTCCTGACACGGATCCATTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGATGGTGATCAAGAACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS-3UTR CAA 90 bp | TTCTGTAATGCTTTTGTGCTCCATGGGTACCAGACTCAAAAATTCTTAGCTAGGCAAGGTCATGGTTACTaGAAATATCTTCATACCTTG | + |
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Preference number: 5 (lower is better) Translates to: FCNAFVLHGYQTQKFLARQGHGY*KYLHTL Trigger: CAAGGTATGAAGATATTTCAAGTAACCATGACCTTG...CCTAGCTAAGAATTTTTGAGTCTGGTACCCATGGAGCACAAAAGCATTACAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS CCA 72 bp | GTGAACCGGGAAGAGCCCAGGACACAAGGGGAGGGATaGAATCTTTCTGCACATTTCTTTCGGGCTTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: VNREEPRTQGEG*NLSAHFFRACF Trigger: GAAGCAAGCCCGAAAGAAATGTGCAGAAAGATTCCATCCCTCCCCTTGTGTCCTGGGCTCTTCCCGGTTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS CAA 90 bp | AGTACACCGTCCCCTTCAGGACTTTTCTCTAGTGAGTCAAGGCACTaGAGGCAGCAGATGTATCCACAGTTCAAGTACACAGGGCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: STPSPSGLFSSESRH*RQQMYPQFKYTGLS Trigger: GGAAAGCCCTGTGTACTTGAACTGTGGATACATCTGCTGCCTCAAGTGCCTTGACTCACTAGAGAAAAGTCCTGAAGGGGACGGTGTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS CAA 72 bp | GGAGGGATGGAATCTTTCTGCACATTTCTTTCGGGCTaGCTTCTGAGGCGTATAGTAGACACTCAGCAGGTC | + |
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Preference number: 6 (lower is better) Translates to: GGMESFCTFLSG*LLRRIVDTQQV Trigger: GACCTGCTGAGTGTCTACTATACGCCTCAGAAGCAAGCCCGAAAGAAATGTGCAGAAAGATTCCATCCCTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS GCA 72 bp | AGAAAGAAACACTTTTCTCTAGCATGTCAAGGAAAATaGCCACTCTACGTAGCCGAGGGTTCACACGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: RKKHFSLACQGK*PLYVAEGSHAA Trigger: TGCTGCGTGTGAACCCTCGGCTACGTAGAGTGGGCATTTTCCTTGACATGCTAGAGAAAAGTGTTTCTTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS GCA 72 bp | CAGGACTTGTTCTTGATCACCATCTGGATAGGAACTTaGTGGAGAAAAGAATGGGCGAAATGGATCCGTGTC | + |
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Preference number: 6 (lower is better) Translates to: QDLFLITIWIGT*WRKEWAKWIRV Trigger: GACACGGATCCATTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGATGGTGATCAAGAACAAGTCCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS CCA 72 bp | GACTTGTTCTTGATCACCATCTGGATAGGAACTTGCTaGAGAAAAGAATGGGCGAAATGGATCCGTGTCAGG | + |
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Preference number: 6 (lower is better) Translates to: DLFLITIWIGTC*RKEWAKWIRVR Trigger: CCTGACACGGATCCATTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGATGGTGATCAAGAACAAGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS CAA 72 bp | TCAGGACTTGTTCTTGATCACCATCTGGATAGGAACTaGCTGGAGAAAAGAATGGGCGAAATGGATCCGTGT | + |
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Preference number: 6 (lower is better) Translates to: SGLVLDHHLDRN*LEKRMGEMDPC Trigger: ACACGGATCCATTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGATGGTGATCAAGAACAAGTCCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS CAA 90 bp | GACAGATACTCAGGACTTGTTCTTGATCACCATCTGGATAGGAACTaGCTGGAGAAAAGAATGGGCGAAATGGATCCGTGTCAGGAATTT | + |
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Preference number: 6 (lower is better) Translates to: DRYSGLVLDHHLDRN*LEKRMGEMDPCQEF Trigger: AAATTCCTGACACGGATCCATTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGATGGTGATCAAGAACAAGTCCTGAGTATCTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS CCA 72 bp | ATCACCATCTGGATAGGAACTTGCTGGAGAAAAGAATaGGCGAAATGGATCCGTGTCAGGAATTTCAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: ITIWIGTCWRKE*AKWIRVRNFKE Trigger: TTCCTTGAAATTCCTGACACGGATCCATTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGATGGTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS CCA 72 bp | AGGACAGATACTCAGGACTTGTTCTTGATCACCATCTaGATAGGAACTTGCTGGAGAAAAGAATGGGCGAAA | + |
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Preference number: 6 (lower is better) Translates to: RTDTQDLFLITI*IGTCWRKEWAK Trigger: TTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCAGATGGTGATCAAGAACAAGTCCTGAGTATCTGTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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| CDS TCA 72 bp | TTCTGGGCTGTGTCCACATCCAAGGTCATGGTTACTTaGAATATCTTCATACCTTGGTCCATTGTCAGAATA | + |
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Preference number: 6 (lower is better) Translates to: FWAVSTSKVMVT*NIFIPWSIVRI Trigger: TATTCTGACAATGGACCAAGGTATGAAGATATTTCAAGTAACCATGACCTTGGATGTGGACACAGCCCAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 |
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| CDS CCA 72 bp | TGGATAGGAACTTGCTGGAGAAAAGAATGGGCGAAATaGATCCGTGTCAGGAATTTCAAGGAATGTATAGAT | + |
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Preference number: 6 (lower is better) Translates to: WIGTCWRKEWAK*IRVRNFKECID Trigger: ATCTATACATTCCTTGAAATTCCTGACACGGATCCATTTCGCCCATTCTTTTCTCCAGCAAGTTCCTATCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045215.9 ENSMUST00000179971.8 ENSMUST00000208468.2 |
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