Pregenerated sensors for RFNG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025158Ensembl transcript IDs: ENSMUST00000026156.8
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGAAGGACCTGTGGCTGGGCTGGAAACCACTGTCTCTGGGGTAGCTaGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGGCTGGGCTGG | + |
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Preference number: 1 (lower is better) Translates to: GRTCGWAGNHCLWGS*GGRLCPGKDLWLGW Trigger: CCAGCCCAGCCACAGGTCCTTCCCTGGACAAAGTCTACCACCCCAGCTACCCCAGAGACAGTGGTTTCCAGCCCAGCCACAGGTCCTTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 90 bp | TTTATCCAGGGAAGGACCTGTGGCTGGGCTGGAAACCACTGTCTCTaGGGTAGCTGGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGG | + |
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Preference number: 1 (lower is better) Translates to: FIQGRTCGWAGNHCL*GSWGGRLCPGKDLW Trigger: CCACAGGTCCTTCCCTGGACAAAGTCTACCACCCCAGCTACCCCAGAGACAGTGGTTTCCAGCCCAGCCACAGGTCCTTCCCTGGATAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 90 bp | GGTAATGGGAGAACAGCAGCCCCTACACAAAAACAGTCCCAAGGCTaGTCCCAAGGCTGGTCCCAAGTCTCCTCTGGTCACACAGTCTGT | + |
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Preference number: 1 (lower is better) Translates to: GNGRTAAPTQKQSQG*SQGWSQVSSGHTVC Trigger: ACAGACTGTGTGACCAGAGGAGACTTGGGACCAGCCTTGGGACCAGCCTTGGGACTGTTTTTGTGTAGGGGCTGCTGTTCTCCCATTACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 90 bp | ACAGCAGCCCCTACACAAAAACAGTCCCAAGGCTGGTCCCAAGGCTaGTCCCAAGTCTCCTCTGGTCACACAGTCTGTACATTCTTACTT | + |
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Preference number: 1 (lower is better) Translates to: TAAPTQKQSQGWSQG*SQVSSGHTVCTFLL Trigger: AAGTAAGAATGTACAGACTGTGTGACCAGAGGAGACTTGGGACCAGCCTTGGGACCAGCCTTGGGACTGTTTTTGTGTAGGGGCTGCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR-3UTR CCA 90 bp | GACCTGTGGCTGGGCTGGGAACCACAGTCTGGGGGTAGCTGGGGTGGTAGACTTGACCTGTGGCTGGGCTaGGAACCACAGTCTGGGGGT | + |
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Preference number: 2 (lower is better) Translates to: DLWLGWEPQSGGSWGGRLDLWLG*EPQSGG Trigger: ACCCCCAGACTGTGGTTCCCAGCCCAGCCACAGGTC...AAGTCTACCACCCCAGCTACCCCCAGACTGTGGTTCCCAGCCCAGCCACAGGTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR-3UTR CCA 90 bp | GGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGGCTGGGCTGGGAACCACAGTCCAGGGAAGGACCTGTaGCTGGGCTGGGAACCACTG | + |
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Preference number: 2 (lower is better) Translates to: GVVDFVQGRTCGWAGNHSPGKDL*LGWEPL Trigger: CAGTGGTTCCCAGCCCAGCCACAGGTCCTTCCCTGG...ACTGTGGTTCCCAGCCCAGCCACAGGTCCTTCCCTGGACAAAGTCTACCACCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR-3UTR CCA 90 bp | CTGGGGGTAGCTGGGGTGGTAGACTTTATCCAGGGAAGGACCTGTGGCTGGGCTGGAAGGACCTGTGGCTaGGCTAAAGGCATCAGGCAC | + |
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Preference number: 2 (lower is better) Translates to: LGVAGVVDFIQGRTCGWAGRTCG*AKGIRH Trigger: GTGCCTGATGCCTTTAGCCCAGCCACAGGTCCTTCC...AGCCCAGCCACAGGTCCTTCCCTGGATAAAGTCTACCACCCCAGCTACCCCCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR-3UTR CCA 90 bp | AGCCCCTACACAAAAACAGTCCCAAGGCTGGTCCCAAGGCTGGTCCCAAGTCTCCCAGGGAAGGACCTGTaGCTGGGCTGGGAACCACAG | + |
|
Preference number: 2 (lower is better) Translates to: SPYTKTVPRLVPRLVPSLPGKDL*LGWEPQ Trigger: CTGTGGTTCCCAGCCCAGCCACAGGTCCTTCCCTGG...GAGACTTGGGACCAGCCTTGGGACCAGCCTTGGGACTGTTTTTGTGTAGGGGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR-3UTR CCA 90 bp | AAACAGTCCCAAGGCTGGTCCCAAGGCTGGTCCCAAGTCTCCTCTGGTCACACAGCAGCAGTTGGAGGCTaGGAAGCACCATCGGGGGTA | + |
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Preference number: 2 (lower is better) Translates to: KQSQGWSQGWSQVSSGHTAAVGG*EAPSGV Trigger: TACCCCCGATGGTGCTTCCCAGCCTCCAACTGCTGC...TGTGTGACCAGAGGAGACTTGGGACCAGCCTTGGGACCAGCCTTGGGACTGTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR-3UTR CCA 90 bp | TGGGAAGCACCATCGGGGGTAGCTGGGGTGGTAGACTTTATCCAGGGAAGGACCGGGAACCACTGTCTCTaGGGTAGTTGGGGTGGTAGA | + |
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Preference number: 2 (lower is better) Translates to: WEAPSGVAGVVDFIQGRTGNHCL*GSWGGR Trigger: TCTACCACCCCAACTACCCCAGAGACAGTGGTTCCC...GGTCCTTCCCTGGATAAAGTCTACCACCCCAGCTACCCCCGATGGTGCTTCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR-3UTR CCA 90 bp | TGGTCCCAAGGCTGGTCCCAAGTCTCCTCTGGTCACACAGTCTGTACATTCTTAGGAAGGACCTGTGGCTaGGCTGGGAACCACTGTCTC | + |
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Preference number: 2 (lower is better) Translates to: WSQGWSQVSSGHTVCTFLGRTCG*AGNHCL Trigger: GAGACAGTGGTTCCCAGCCCAGCCACAGGTCCTTCC...TAAGAATGTACAGACTGTGTGACCAGAGGAGACTTGGGACCAGCCTTGGGACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR-3UTR GCA 90 bp | TGGTCCCAAGGCTGGTCCCAAGTCTCCTCTGGTCACACAGTCTGTACATTCTTAGGCACTCAGCATCTTTaGCTTTCTCTCTTCCTGGAC | + |
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Preference number: 2 (lower is better) Translates to: WSQGWSQVSSGHTVCTFLGTQHL*LSLFLD Trigger: GTCCAGGAAGAGAGAAAGGCAAAGATGCTGAGTGCC...TAAGAATGTACAGACTGTGTGACCAGAGGAGACTTGGGACCAGCCTTGGGACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 72 bp | AGCTGGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTaGCTGGGCTGGGAACCACAGTCTGGGGGTAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: SWGGRLCPGKDL*LGWEPQSGGSW Trigger: CCAGCTACCCCCAGACTGTGGTTCCCAGCCCAGCCACAGGTCCTTCCCTGGACAAAGTCTACCACCCCAGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 72 bp | TGTGGCTGGGCTGGGAACCACTGTCTCTGGGGTAGCTaGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: CGWAGNHCLWGS*GGRLCPGKDLW Trigger: CCACAGGTCCTTCCCTGGACAAAGTCTACCACCCCAGCTACCCCAGAGACAGTGGTTCCCAGCCCAGCCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 72 bp | ACGCACAGCCCGGTTGTCTCATTTTCCAGAGGTACCTaGTGTCCAACTGGGACCGAGGTCGTGGGAGGCCTT | + |
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Preference number: 3 (lower is better) Translates to: THSPVVSFSRGT*CPTGTEVVGGL Trigger: AAGGCCTCCCACGACCTCGGTCCCAGTTGGACACCAGGTACCTCTGGAAAATGAGACAACCGGGCTGTGCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 72 bp | TGTGGCTGGGCTGGGAACCACTGTCTCTGGGGTAGTTaGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: CGWAGNHCLWGS*GGRLCPGKDLW Trigger: CCACAGGTCCTTCCCTGGACAAAGTCTACCACCCCAACTACCCCAGAGACAGTGGTTCCCAGCCCAGCCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 72 bp | TGTGGCTGGGCTGGAAACCACTGTCTCTGGGGTAGCTaGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: CGWAGNHCLWGS*GGRLCPGKDLW Trigger: CCACAGGTCCTTCCCTGGACAAAGTCTACCACCCCAGCTACCCCAGAGACAGTGGTTTCCAGCCCAGCCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 72 bp | AGCAGTTGGAGGCTGGGAAGCACCATCGGGGGTAGCTaGGGTGGTAGACTTTATCCAGGGAAGGACCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: SSWRLGSTIGGS*GGRLYPGKDLW Trigger: CCACAGGTCCTTCCCTGGATAAAGTCTACCACCCCAGCTACCCCCGATGGTGCTTCCCAGCCTCCAACTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR GCA 72 bp | GTGGCTGGGCTAAAGGCATCAGGCACTCAGCATCTTTaGCTTTCTCTCTTCCTGGACGGTCTCGGCACGCAC | + |
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Preference number: 3 (lower is better) Translates to: VAGLKASGTQHL*LSLFLDGLGTH Trigger: GTGCGTGCCGAGACCGTCCAGGAAGAGAGAAAGGCAAAGATGCTGAGTGCCTGATGCCTTTAGCCCAGCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 72 bp | CATCAGGCACTCAGCATCTTTGCCTTTCTCTCTTCCTaGACGGTCTCGGCACGCACAGCCCGGTTGTCTCAT | + |
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Preference number: 3 (lower is better) Translates to: HQALSIFAFLSS*TVSARTARLSH Trigger: ATGAGACAACCGGGCTGTGCGTGCCGAGACCGTCCAGGAAGAGAGAAAGGCAAAGATGCTGAGTGCCTGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 72 bp | GGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGGCTaGGCTAAAGGCATCAGGCACTCAGCATCTTTGCCT | + |
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Preference number: 3 (lower is better) Translates to: GVVDFVQGRTCG*AKGIRHSASLP Trigger: AGGCAAAGATGCTGAGTGCCTGATGCCTTTAGCCCAGCCACAGGTCCTTCCCTGGACAAAGTCTACCACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CCA 72 bp | AGAACAGCAGCCCCTACACAAAAACAGTCCCAAGGCTaGTCCCAAGGCTGGTCCCAAGTCTCCTCTGGTCAC | + |
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Preference number: 3 (lower is better) Translates to: RTAAPTQKQSQG*SQGWSQVSSGH Trigger: GTGACCAGAGGAGACTTGGGACCAGCCTTGGGACCAGCCTTGGGACTGTTTTTGTGTAGGGGCTGCTGTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR-3UTR CAA 90 bp | AAGGCTGGTCCCAAGTCTCCTCTGGTCACACAGTCTGTACATTCTTACTTAGTGAGGCACTCAGCATCTTaGCCTTTCTCTCTTCCTGGA | + |
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Preference number: 3 (lower is better) Translates to: KAGPKSPLVTQSVHSYLVRHSAS*PFSLPG Trigger: TCCAGGAAGAGAGAAAGGCAAAGATGCTGAGTGCCT...CACTAAGTAAGAATGTACAGACTGTGTGACCAGAGGAGACTTGGGACCAGCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR GCA 90 bp | GCTGGGCTGGGAACCACTGTCTCTGGGGTAGTTGGGGTGGTAGACTTTGTCCAGGATCATGCGGCCGCCTaGCAGCATCTGGAGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: AGLGTTVSGVVGVVDFVQDHAAA*QHLELR Trigger: CCTGAGCTCCAGATGCTGGCAGGCGGCCGCATGATC...CTGGACAAAGTCTACCACCCCAACTACCCCAGAGACAGTGGTTCCCAGCCCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR GCA 90 bp | GGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGGCTGGGCTGGGAACCACAGTCCAGACGGCAGCCTCTaGAGGTTTTCCAGGTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: GVVDFVQGRTCGWAGNHSPDGSL*RFSRCE Trigger: CTCGCACCTGGAAAACCTGCAGAGGCTGCCGTCTGG...ACTGTGGTTCCCAGCCCAGCCACAGGTCCTTCCCTGGACAAAGTCTACCACCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | TCTGGGGTAGCTGGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGGCTGGGCTTTGCAGCACAGTGCTTaGCGGGTGCGCACAGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: SGVAGVVDFVQGRTCGWALQHSA*RVRTAE Trigger: CTCTGCTGTGCGCACCCGCCAAGCACTGTGCTGCAA...AGCCCAGCCACAGGTCCTTCCCTGGACAAAGTCTACCACCCCAGCTACCCCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | CTGCAGGTGAGGACAAGCCGCAGCAGTTGGAGGCTGGGAAGCACCATCGGGGGTACACCAGTGGGTGTCTaGGTAGAGAAGGCAGTGCAC | + |
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Preference number: 4 (lower is better) Translates to: LQVRTSRSSWRLGSTIGGTPVGV*VEKAVH Trigger: GTGCACTGCCTTCTCTACCCAGACACCCACTGGTGT...ACCCCCGATGGTGCTTCCCAGCCTCCAACTGCTGCGGCTTGTCCTCACCTGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | ACGCACAGCCCGGTTGTCTCATTTTCCAGAGGTACCTGGTGTCCAACTGGGACCCCGCCTGCCAGCATCTaGAGCTCAGGGTCGTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: THSPVVSFSRGTWCPTGTPPASI*SSGSSP Trigger: TGGAGACGACCCTGAGCTCCAGATGCTGGCAGGCGG...GGTCCCAGTTGGACACCAGGTACCTCTGGAAAATGAGACAACCGGGCTGTGCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | CTGATGGATGAGCCTGCATCTCACTCCAAGGAGCCCAAAGGGAAGGCTCTAGCGTGGAACAGGGGGCTATaGAGCAGACGGGCGCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: LMDEPASHSKEPKGKALAWNRGL*SRRAPR Trigger: TCTGGGCGCCCGTCTGCTCCATAGCCCCCTGTTCCA...CGCTAGAGCCTTCCCTTTGGGCTCCTTGGAGTGAGATGCAGGCTCATCCATCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR GCA 90 bp | CACTCAGCATCTTTGCCTTTCTCTCTTCCTGGACGGTCTCGGCACGCACAGCCCCAGCCGAACCCGCTCTaGTGTGCTCATGAAACTGCC | + |
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Preference number: 4 (lower is better) Translates to: HSASLPFSLPGRSRHAQPQPNPL*CAHETA Trigger: GGCAGTTTCATGAGCACAGCAGAGCGGGTTCGGCTG...GGGCTGTGCGTGCCGAGACCGTCCAGGAAGAGAGAAAGGCAAAGATGCTGAGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | GGTCCCAAGGCTGGTCCCAAGTCTCCTCTGGTCACACAGTCTGTACATTCTTACCGCAGGCGCGGGCCGTaGTTCTTCCGAGTGGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GPKAGPKSPLVTQSVHSYRRRGP*FFRVVL Trigger: CAAGACCACTCGGAAGAACCACGGCCCGCGCCTGCG...GTAAGAATGTACAGACTGTGTGACCAGAGGAGACTTGGGACCAGCCTTGGGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR TCA 90 bp | CAGCCCCTACACAAAAACAGTCCCAAGGCTGGTCCCAAGGCTGGTCCCAAGTCTAGGCAGTGCACAGACTaGAACCGTGTAGGGTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: QPLHKNSPKAGPKAGPKSRQCTD*NRVGSC Trigger: GCAGGACCCTACACGGTTTCAGTCTGTGCACTGCCT...AGACTTGGGACCAGCCTTGGGACCAGCCTTGGGACTGTTTTTGTGTAGGGGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR GCA 90 bp | CACTCAGCATCTTTGCCTTTCTCTCTTCCTGGACGGTCTCGGCACGCACAGCCCCCGAGTGGTCTTGACTaGAATGAAGACGTCGTCGGG | + |
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Preference number: 4 (lower is better) Translates to: HSASLPFSLPGRSRHAQPPSGLD*NEDVVG Trigger: CCCGACGACGTCTTCATTGCAGTCAAGACCACTCGG...GGGCTGTGCGTGCCGAGACCGTCCAGGAAGAGAGAAAGGCAAAGATGCTGAGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR GCA 90 bp | GTGGTAGACTTTGTCCAGGGAAGGACCTGTGGCTGGGCTGGGAACCACTGTCTCTGCAGGTTTTCCAGGTaGGAGTGGAACAGGGGGCTA | + |
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Preference number: 4 (lower is better) Translates to: VVDFVQGRTCGWAGNHCLCRFSR*EWNRGL Trigger: TAGCCCCCTGTTCCACTCGCACCTGGAAAACCTGCA...GAGACAGTGGTTCCCAGCCCAGCCACAGGTCCTTCCCTGGACAAAGTCTACCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR TCA 90 bp | GGTCCCAAGGCTGGTCCCAAGTCTCCTCTGGTCACACAGTCTGTACATTCTTACGCTCTGCTGTGCTCATaGAACTGCCAAGGCTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: GPKAGPKSPLVTQSVHSYALLCS*NCQGWP Trigger: GGGCCAGCCTTGGCAGTTTCATGAGCACAGCAGAGC...GTAAGAATGTACAGACTGTGTGACCAGAGGAGACTTGGGACCAGCCTTGGGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR GCA 90 bp | GTGGTAGACTTTGTCCAGGGAAGGACCTGTGGCTGGGCTGGGAACCACTGTCTCAAGGTGGAAAGCAGGTaGAGCAGGCTTTTGGGGTTC | + |
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Preference number: 4 (lower is better) Translates to: VVDFVQGRTCGWAGNHCLKVESR*SRLLGF Trigger: GAACCCCAAAAGCCTGCTGCACCTGCTTTCCACCTT...GAGACAGTGGTTCCCAGCCCAGCCACAGGTCCTTCCCTGGACAAAGTCTACCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | TCTGCAGGTGAGGACAAGCCGCAGCAGTTGGAGGCTGGGAAGCACCATCGGGGGTTGTCATCATCCACGTaGCAGAACCATTTTCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SAGEDKPQQLEAGKHHRGLSSST*QNHFRP Trigger: TGGACGAAAATGGTTCTGCCACGTGGATGATGACAA...CCCCCGATGGTGCTTCCCAGCCTCCAACTGCTGCGGCTTGTCCTCACCTGCAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | ACGCACAGCCCGGTTGTCTCATTTTCCAGAGGTACCTGGTGTCCAACTGGGACCTTTTCCAGGTGCGAGTaGAACAGGGGGCTATGGAGC | + |
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Preference number: 4 (lower is better) Translates to: THSPVVSFSRGTWCPTGTFSRCE*NRGLWS Trigger: GCTCCATAGCCCCCTGTTCCACTCGCACCTGGAAAA...GGTCCCAGTTGGACACCAGGTACCTCTGGAAAATGAGACAACCGGGCTGTGCGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| 3UTR CAA 72 bp | TGTGGCTGGGCTAAAGGCATCAGGCACTCAGCATCTTaGCCTTTCTCTCTTCCTGGACGGTCTCGGCACGCA | + |
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Preference number: 4 (lower is better) Translates to: CGWAKGIRHSAS*PFSLPGRSRHA Trigger: TGCGTGCCGAGACCGTCCAGGAAGAGAGAAAGGCAAAGATGCTGAGTGCCTGATGCCTTTAGCCCAGCCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR GCA 90 bp | TGTGGCTGGGCTGGAAACCACTGTCTCTGGGGTAGCTGGGGTGGTAGACTTTGTATTCCACCGACATTTTaGAGCACAGTGCTTGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: CGWAGNHCLWGSWGGRLCIPPTF*STVLGG Trigger: CCCGCCAAGCACTGTGCTGCAAAATGTCGGTGGAAT...ACAAAGTCTACCACCCCAGCTACCCCAGAGACAGTGGTTTCCAGCCCAGCCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR GCA 90 bp | AGCCCCTACACAAAAACAGTCCCAAGGCTGGTCCCAAGGCTGGTCCCAAGTCTCCGATGTATCCCACAGTaGAGTCATCAGGCAGCCGAA | + |
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Preference number: 4 (lower is better) Translates to: SPYTKTVPRLVPRLVPSLRCIPQ*SHQAAE Trigger: TTCGGCTGCCTGATGACTGCACTGTGGGATACATCG...GAGACTTGGGACCAGCCTTGGGACCAGCCTTGGGACTGTTTTTGTGTAGGGGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR GCA 90 bp | TGTGGCTGGGCTGGAAACCACTGTCTCTGGGGTAGCTGGGGTGGTAGACTTTGTCTCAAGGTAACCTGCTaGAAAATAGCACCAGACGGC | + |
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Preference number: 4 (lower is better) Translates to: CGWAGNHCLWGSWGGRLCLKVTC*KIAPDG Trigger: GCCGTCTGGTGCTATTTTGCAGCAGGTTACCTTGAG...ACAAAGTCTACCACCCCAGCTACCCCAGAGACAGTGGTTTCCAGCCCAGCCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | GTGGTAGACTTTGTCCAGGGAAGGACCTGTGGCTGGGCTGGGAACCACTGTCTCGGTAGATGTCCTGGTTaGAAGAGAAGGTGGAAAGCA | + |
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Preference number: 4 (lower is better) Translates to: VVDFVQGRTCGWAGNHCLGRCPG*KRRWKA Trigger: TGCTTTCCACCTTCTCTTCCAACCAGGACATCTACC...GAGACAGTGGTTCCCAGCCCAGCCACAGGTCCTTCCCTGGACAAAGTCTACCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | AAGGCTGGTCCCAAGTCTCCTCTGGTCACACAGTCTGTACATTCTTACTTAGTGCTTGGACCCTCTCTGTaGCTTCGATGGGGTGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KAGPKSPLVTQSVHSYLVLGPSL*LRWGGP Trigger: TGGACCACCCCATCGAAGCCACAGAGAGGGTCCAAG...CACTAAGTAAGAATGTACAGACTGTGTGACCAGAGGAGACTTGGGACCAGCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CCA 90 bp | ACCTGTGGCTGGGCTAAAGGCATCAGGCACTCAGCATCTTTGCCTTTCTCTCTTATTCACCACATTATGTaGGTTCTCAGGACCCCCATA | + |
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Preference number: 4 (lower is better) Translates to: TCGWAKGIRHSASLPFSLIHHIM*VLRTPI Trigger: TATGGGGGTCCTGAGAACCCACATAATGTGGTGAAT...AAGAGAGAAAGGCAAAGATGCTGAGTGCCTGATGCCTTTAGCCCAGCCACAGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CAA 90 bp | CACTGTCTCTGGGGTAGCTGGGGTGGTAGACTTTGTCCAGGGAAGGACCTGTGGTTTGCAGCACAGTGCTaGGCGGGTGCGCACAGCAGA | + |
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Preference number: 5 (lower is better) Translates to: HCLWGSWGGRLCPGKDLWFAAQC*AGAHSR Trigger: TCTGCTGTGCGCACCCGCCAAGCACTGTGCTGCAAA...CCACAGGTCCTTCCCTGGACAAAGTCTACCACCCCAGCTACCCCAGAGACAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CAA 90 bp | AGGACCTGTGGCTGGGCTGGGAACCACAGTCTGGGGGTAGCTGGGGTGGTAGACTTCTTCCGAGTGGTCTaGACTGCAATGAAGACGTCG | + |
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Preference number: 5 (lower is better) Translates to: RTCGWAGNHSLGVAGVVDFFRVV*TAMKTS Trigger: CGACGTCTTCATTGCAGTCAAGACCACTCGGAAGAA...GTCTACCACCCCAGCTACCCCCAGACTGTGGTTCCCAGCCCAGCCACAGGTCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS-3UTR CAA 90 bp | GGTCCCAAGGCTGGTCCCAAGTCTCCTCTGGTCACACAGTCTGTACATTCTTACGCCCACGGGCTCATTTaGAGGGCAAGGCCCCTGCTC | + |
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Preference number: 5 (lower is better) Translates to: GPKAGPKSPLVTQSVHSYAHGLI*RARPLL Trigger: GAGCAGGGGCCTTGCCCTCAAAATGAGCCCGTGGGC...GTAAGAATGTACAGACTGTGTGACCAGAGGAGACTTGGGACCAGCCTTGGGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS CCA 90 bp | ACAGCAGAGCAATTGGTGTTGATCATGCGGCCGCCTGCCAGCATCTaGAGCTCAGGGTCGTCTCCATCGGTGAAAATGAACGTCTGCCGT | + |
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Preference number: 5 (lower is better) Translates to: TAEQLVLIMRPPASI*SSGSSPSVKMNVCR Trigger: ACGGCAGACGTTCATTTTCACCGATGGAGACGACCCTGAGCTCCAGATGCTGGCAGGCGGCCGCATGATCAACACCAATTGCTCTGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS CCA 90 bp | GAAAGCTCCCTCAACCCTGTTCTTCATAGGACACCAGTGGGTGTCTaGGTAGAGAAGGCAGTGCACAGACTGAAACCGTGTAGGGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: ESSLNPVLHRTPVGV*VEKAVHRLKPCRVL Trigger: CAGGACCCTACACGGTTTCAGTCTGTGCACTGCCTTCTCTACCCAGACACCCACTGGTGTCCTATGAAGAACAGGGTTGAGGGAGCTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS CCA 90 bp | TCTAGGAACTTATCATATTCCACCGACATTTTGCAGCACAGTGCTTaGCGGGTGCGCACAGCAGAGCAATTGGTGTTGATCATGCGGCCG | + |
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Preference number: 5 (lower is better) Translates to: SRNLSYSTDILQHSA*RVRTAEQLVLIMRP Trigger: CGGCCGCATGATCAACACCAATTGCTCTGCTGTGCGCACCCGCCAAGCACTGTGCTGCAAAATGTCGGTGGAATATGATAAGTTCCTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS CCA 90 bp | GTCCTGCTGTATGTTGAAACTGCCAGCTACATTCACCACATTATGTaGGTTCTCAGGACCCCCATAGCTCAAGGTAACCTGCTGCAAAAT | + |
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Preference number: 5 (lower is better) Translates to: VLLYVETASYIHHIM*VLRTPIAQGNLLQN Trigger: ATTTTGCAGCAGGTTACCTTGAGCTATGGGGGTCCTGAGAACCCACATAATGTGGTGAATGTAGCTGGCAGTTTCAACATACAGCAGGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS TCA 72 bp | TCCATCGGTGAAAATGAACGTCTGCCGTGGGGCTCGTaGGATCCAGGTACGCAGCAGCAGCCGCAGGCGCGG | + |
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Preference number: 6 (lower is better) Translates to: SIGENERLPWGS*DPGTQQQPQAR Trigger: CCGCGCCTGCGGCTGCTGCTGCGTACCTGGATCTCACGAGCCCCACGGCAGACGTTCATTTTCACCGATGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS CCA 72 bp | TGCAGGTTTTCCAGGTGCGAGTGGAACAGGGGGCTATaGAGCAGACGGGCGCCCAGAAGTCCTTCCACGATG | + |
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Preference number: 6 (lower is better) Translates to: CRFSRCEWNRGL*SRRAPRSPSTM Trigger: CATCGTGGAAGGACTTCTGGGCGCCCGTCTGCTCCATAGCCCCCTGTTCCACTCGCACCTGGAAAACCTGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS CCA 72 bp | CTCAACCCTGTTCTTCATAGGACACCAGTGGGTGTCTaGGTAGAGAAGGCAGTGCACAGACTGAAACCGTGT | + |
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Preference number: 6 (lower is better) Translates to: LNPVLHRTPVGV*VEKAVHRLKPC Trigger: ACACGGTTTCAGTCTGTGCACTGCCTTCTCTACCCAGACACCCACTGGTGTCCTATGAAGAACAGGGTTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS GCA 72 bp | CAGATTCTAGGAACTTATCATATTCCACCGACATTTTaGAGCACAGTGCTTGGCGGGTGCGCACAGCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: QILGTYHIPPTF*STVLGGCAQQS Trigger: GCTCTGCTGTGCGCACCCGCCAAGCACTGTGCTGCAAAATGTCGGTGGAATATGATAAGTTCCTAGAATCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS CAA 72 bp | CCAGATTCTAGGAACTTATCATATTCCACCGACATTTaGCAGCACAGTGCTTGGCGGGTGCGCACAGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: PDSRNLSYSTDI*QHSAWRVRTAE Trigger: CTCTGCTGTGCGCACCCGCCAAGCACTGTGCTGCAAAATGTCGGTGGAATATGATAAGTTCCTAGAATCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS GCA 72 bp | GAACTTATCATATTCCACCGACATTTTGCAGCACAGTaGTTGGCGGGTGCGCACAGCAGAGCAATTGGTGTT | + |
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Preference number: 6 (lower is better) Translates to: ELIIFHRHFAAQ*LAGAHSRAIGV Trigger: AACACCAATTGCTCTGCTGTGCGCACCCGCCAAGCACTGTGCTGCAAAATGTCGGTGGAATATGATAAGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS CAA 72 bp | CTTATCATATTCCACCGACATTTTGCAGCACAGTGCTaGGCGGGTGCGCACAGCAGAGCAATTGGTGTTGAT | + |
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Preference number: 6 (lower is better) Translates to: LIIFHRHFAAQC*AGAHSRAIGVD Trigger: ATCAACACCAATTGCTCTGCTGTGCGCACCCGCCAAGCACTGTGCTGCAAAATGTCGGTGGAATATGATAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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| CDS CCA 72 bp | TATGTTGAAACTGCCAGCTACATTCACCACATTATGTaGGTTCTCAGGACCCCCATAGCTCAAGGTAACCTG | + |
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Preference number: 6 (lower is better) Translates to: YVETASYIHHIM*VLRTPIAQGNL Trigger: CAGGTTACCTTGAGCTATGGGGGTCCTGAGAACCCACATAATGTGGTGAATGTAGCTGGCAGTTTCAACATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026156.8 |
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