Pregenerated sensors for RFLNB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020846Ensembl transcript IDs: ENSMUST00000021207.7
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCATGCTCGGGCTGCACCAGAGCCTGGGCCTGAAACCAACCCTCTaGAACCACAGGGCTGCGGTGCCTCGGACCAGGCTAGCTGTTTAC | + |
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Preference number: 1 (lower is better) Translates to: SMLGLHQSLGLKPTL*NHRAAVPRTRLAVY Trigger: GTAAACAGCTAGCCTGGTCCGAGGCACCGCAGCCCTGTGGTTCCAGAGGGTTGGTTTCAGGCCCAGGCTCTGGTGCAGCCCGAGCATGCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR GCA 90 bp | GCACCAGAGCCTGGGCCTGAAACCAACCCTCTGGAACCACAGGGCTaGGGTGCCTCGGACCAGGCTAGCTGTTTACCCAACCGACAACAG | + |
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Preference number: 1 (lower is better) Translates to: APEPGPETNPLEPQG*GASDQASCLPNRQQ Trigger: CTGTTGTCGGTTGGGTAAACAGCTAGCCTGGTCCGAGGCACCGCAGCCCTGTGGTTCCAGAGGGTTGGTTTCAGGCCCAGGCTCTGGTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CCA 90 bp | TTAAACCTGCCTCCTCCTCCTGTCGGCATCTGGGCTCAGGCACGGTaGCCCACAGTGGAGACCCTTTCCTTGCAGCCCCCAAAGCATGTT | + |
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Preference number: 1 (lower is better) Translates to: LNLPPPPVGIWAQAR*PTVETLSLQPPKHV Trigger: AACATGCTTTGGGGGCTGCAAGGAAAGGGTCTCCACTGTGGGCCACCGTGCCTGAGCCCAGATGCCGACAGGAGGAGGAGGCAGGTTTAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CCA 90 bp | AGGAGCTTGGAGGATCCCAGGGTGTCCCCCAAATGTGCTGTACCCTaGCCAACTGGGACCATGATGCCAGCAGCCTCTGTGTCCAGATGG | + |
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Preference number: 1 (lower is better) Translates to: RSLEDPRVSPKCAVP*PTGTMMPAASVSRW Trigger: CCATCTGGACACAGAGGCTGCTGGCATCATGGTCCCAGTTGGCCAGGGTACAGCACATTTGGGGGACACCCTGGGATCCTCCAAGCTCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CCA 90 bp | GGATCTGAGTCACATTTAAACCTGCCTCCTCCTCCTGTCGGCATCTaGGCTCAGGCACGGTGGCCCACAGTGGAGACCCTTTCCTTGCAG | + |
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Preference number: 1 (lower is better) Translates to: GSESHLNLPPPPVGI*AQARWPTVETLSLQ Trigger: CTGCAAGGAAAGGGTCTCCACTGTGGGCCACCGTGCCTGAGCCCAGATGCCGACAGGAGGAGGAGGCAGGTTTAAATGTGACTCAGATCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR GCA 90 bp | GCATCTGGGCTCAGGCACGGTGGCCCACAGTGGAGACCCTTTCCTTaGAGCCCCCAAAGCATGTTTTTCCAAAGCATTCTTTCAGAATGC | + |
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Preference number: 1 (lower is better) Translates to: ASGLRHGGPQWRPFP*SPQSMFFQSILSEC Trigger: GCATTCTGAAAGAATGCTTTGGAAAAACATGCTTTGGGGGCTGCAAGGAAAGGGTCTCCACTGTGGGCCACCGTGCCTGAGCCCAGATGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CCA 90 bp | TGCCCCTGCTGCTGTAGCTGGCTCAGCTGGATTCTGGAAGTAGGCTaGGAAACACCTTTGTGCATACCTGACTCCACAATAGTCACTCCC | + |
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Preference number: 1 (lower is better) Translates to: CPCCCSWLSWILEVG*ETPLCIPDSTIVTP Trigger: GGGAGTGACTATTGTGGAGTCAGGTATGCACAAAGGTGTTTCCCAGCCTACTTCCAGAATCCAGCTGAGCCAGCTACAGCAGCAGGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR TCA 90 bp | ACTGGGACCATGATGCCAGCAGCCTCTGTGTCCAGATGGATGAGTTaGAAGTACAACAGACTCTGTCATCTGCAGGGGACACGGACTAGG | + |
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Preference number: 1 (lower is better) Translates to: TGTMMPAASVSRWMS*KYNRLCHLQGTRTR Trigger: CCTAGTCCGTGTCCCCTGCAGATGACAGAGTCTGTTGTACTTTCAACTCATCCATCTGGACACAGAGGCTGCTGGCATCATGGTCCCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR TCA 90 bp | CTGCTGTGGATCCAGGGAAGCCCGTGTGCTCTCAATTTTGCTTTCTaGGCAGATGGAAGCTATCACAGAGACCCAGAGATACAAGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: LLWIQGSPCALNFAF*ADGSYHRDPEIQGK Trigger: CTTCCCTTGTATCTCTGGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAAAATTGAGAGCACACGGGCTTCCCTGGATCCACAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR GCA 90 bp | AGCTGGCTCAGCTGGATTCTGGAAGTAGGCTGGGAAACACCTTTGTaGATACCTGACTCCACAATAGTCACTCCCGAATATTCAGTGGTA | + |
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Preference number: 1 (lower is better) Translates to: SWLSWILEVGWETPL*IPDSTIVTPEYSVV Trigger: TACCACTGAATATTCGGGAGTGACTATTGTGGAGTCAGGTATGCACAAAGGTGTTTCCCAGCCTACTTCCAGAATCCAGCTGAGCCAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR TCA 90 bp | CAGCTGGATTCTGGAAGTAGGCTGGGAAACACCTTTGTGCATACCTaGCTCCACAATAGTCACTCCCGAATATTCAGTGGTATGAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: QLDSGSRLGNTFVHT*LHNSHSRIFSGMKE Trigger: TTCTTTCATACCACTGAATATTCGGGAGTGACTATTGTGGAGTCAGGTATGCACAAAGGTGTTTCCCAGCCTACTTCCAGAATCCAGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR GCA 90 bp | TCCTACTTTGTTCATCAGAAAATGGAGGACAAGCTCACCTCCACCTaGCCAGATATCACTGTCCTATCATTGTCCTTTTGTTCTGCCTCT | + |
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Preference number: 1 (lower is better) Translates to: SYFVHQKMEDKLTST*PDITVLSLSFCSAS Trigger: AGAGGCAGAACAAAAGGACAATGATAGGACAGTGATATCTGGGCAGGTGGAGGTGAGCTTGTCCTCCATTTTCTGATGAACAAAGTAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR TCA 90 bp | TCAAATGACAAGATGCTTGTTTACATCAAGTCCTTTTTAGGCATCTaGGAGGAAAACCACCTGCCTCTAGACACCTGCATCACCTCCAAC | + |
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Preference number: 1 (lower is better) Translates to: SNDKMLVYIKSFLGI*EENHLPLDTCITSN Trigger: GTTGGAGGTGATGCAGGTGTCTAGAGGCAGGTGGTTTTCCTCTCAGATGCCTAAAAAGGACTTGATGTAAACAAGCATCTTGTCATTTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR GCA 90 bp | TTGTTCTGCCTCTATTTTCTCATCAACTTGAGACTTTGGGGAAACTaGATCAACCAACCAGAATACACACACACACACACACACACACAC | + |
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Preference number: 1 (lower is better) Translates to: LFCLYFLINLRLWGN*INQPEYTHTHTHTH Trigger: GTGTGTGTGTGTGTGTGTGTGTGTGTATTCTGGTTGGTTGATGCAGTTTCCCCAAAGTCTCAAGTTGATGAGAAAATAGAGGCAGAACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CCA 90 bp | ATTGTCCTTTTGTTCTGCCTCTATTTTCTCATCAACTTGAGACTTTaGGGAAACTGCATCAACCAACCAGAATACACACACACACACACA | + |
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Preference number: 1 (lower is better) Translates to: IVLLFCLYFLINLRL*GNCINQPEYTHTHT Trigger: TGTGTGTGTGTGTGTGTATTCTGGTTGGTTGATGCAGTTTCCCCAAAGTCTCAAGTTGATGAGAAAATAGAGGCAGAACAAAAGGACAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR GCA 90 bp | GCGGCGTCACCACCATCAGGGTGCTCCAGGATGCCACGCCCAGCTTCCAGGCCTACAGACTCTGTCATCTaGAGGGGACACGGACTAGGT | + |
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Preference number: 2 (lower is better) Translates to: AASPPSGCSRMPRPASRPTDSVI*RGHGLG Trigger: ACCTAGTCCGTGTCCCCTGCAGATGACAGAGTCTGT...AGGCCTGGAAGCTGGGCGTGGCATCCTGGAGCACCCTGATGGTGGTGACGCCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR GCA 90 bp | GCGGCGTCACCACCATCAGGGTGCTCCAGGATGCCACGCCCAGCTTCCAGGCCTACATCCACAGTCACTTaGTTCGACTTACTGATGTGC | + |
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Preference number: 2 (lower is better) Translates to: AASPPSGCSRMPRPASRPTSTVT*FDLLMC Trigger: GCACATCAGTAAGTCGAAGCAAGTGACTGTGGATGT...AGGCCTGGAAGCTGGGCGTGGCATCCTGGAGCACCCTGATGGTGGTGACGCCGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR CCA 90 bp | CGGCATCAAAACCTGCCTTTCCATCTACATCAGACATCCACAGTCACTTGCTTCCCTCCTGTCGGCATCTaGGCTCAGGCACGGTGGCCC | + |
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Preference number: 2 (lower is better) Translates to: RHQNLPFHLHQTSTVTCFPPVGI*AQARWP Trigger: GGGCCACCGTGCCTGAGCCCAGATGCCGACAGGAGG...GAAGCAAGTGACTGTGGATGTCTGATGTAGATGGAAAGGCAGGTTTTGATGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR GCA 90 bp | TTGCTTTCTGAGCAGATGGAAGCTATCACAGAGACCCAGAGATACAAGGGAAGGCTGGAACCACAGGGCTaGGGTGCCTCGGACCAGGCT | + |
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Preference number: 2 (lower is better) Translates to: LLSEQMEAITETQRYKGRLEPQG*GASDQA Trigger: AGCCTGGTCCGAGGCACCGCAGCCCTGTGGTTCCAG...CCTTCCCTTGTATCTCTGGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR GCA 90 bp | GCCGTCTCTCACCCGCACACTCAGGAATGTCAGGTGGGTGAGTTTTACAAACCTGGTGTCCCCCAAATGTaGTGTACCCTGGCCAACTGG | + |
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Preference number: 2 (lower is better) Translates to: AVSHPHTQECQVGEFYKPGVPQM*CTLANW Trigger: CCAGTTGGCCAGGGTACAGCACATTTGGGGGACACC...AGGTTTGTAAAACTCACCCACCTGACATTCCTGAGTGTGCGGGTGAGAGACGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CAA 90 bp | GGCATCTGGGCTCAGGCACGGTGGCCCACAGTGGAGACCCTTTCCTaGCAGCCCCCAAAGCATGTTTTTCCAAAGCATTCTTTCAGAATG | + |
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Preference number: 2 (lower is better) Translates to: GIWAQARWPTVETLS*QPPKHVFPKHSFRM Trigger: CATTCTGAAAGAATGCTTTGGAAAAACATGCTTTGGGGGCTGCAAGGAAAGGGTCTCCACTGTGGGCCACCGTGCCTGAGCCCAGATGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR CCA 90 bp | CCCCATTCCTCCCAGTTTCGACACTATCAGAGTCCAAAGAATAAGTCCATCATTCCAGCTTGTCCAGGGTaGTCTGGGGACCAGGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: PHSSQFRHYQSPKNKSIIPACPG*SGDQGS Trigger: ACTGCCCTGGTCCCCAGACCACCCTGGACAAGCTGG...AATGATGGACTTATTCTTTGGACTCTGATAGTGTCGAAACTGGGAGGAATGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CAA 90 bp | ACCAGTCTCTGCTGTGGATCCAGGGAAGCCCGTGTGCTCTCAATTTaGCTTTCTGAGCAGATGGAAGCTATCACAGAGACCCAGAGATAC | + |
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Preference number: 2 (lower is better) Translates to: TSLCCGSREARVLSI*LSEQMEAITETQRY Trigger: GTATCTCTGGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAAAATTGAGAGCACACGGGCTTCCCTGGATCCACAGCAGAGACTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR TCA 90 bp | CCCCATTCCTCCCAGTTTCGACACTATCAGAGTCCAAAGAATAAGTCCATCATTACCAGAGCCTGGGCCTaGAACCAACCCTCTGGAACC | + |
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Preference number: 2 (lower is better) Translates to: PHSSQFRHYQSPKNKSIITRAWA*NQPSGT Trigger: GGTTCCAGAGGGTTGGTTTCAGGCCCAGGCTCTGGT...AATGATGGACTTATTCTTTGGACTCTGATAGTGTCGAAACTGGGAGGAATGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR CCA 90 bp | CGGCATCAAAACCTGCCTTTCCATCTACATCAGACATCCACAGTCACTTGCTTCAGATCCCTCTGGGGCTaGGGTGATGTGCAAGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: RHQNLPFHLHQTSTVTCFRSLWG*GDVQEQ Trigger: TTGCTCTTGCACATCACCCCAGCCCCAGAGGGATCT...GAAGCAAGTGACTGTGGATGTCTGATGTAGATGGAAAGGCAGGTTTTGATGCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR CCA 90 bp | CATCTACATCAGACATCCACAGTCACTTGCTTCGACTTACTGATGTGCTTCCACTCCAGCAGTGGGGCCTaGCAGGGGATTCTAAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: HLHQTSTVTCFDLLMCFHSSSGA*QGILRS Trigger: GCTTCTTAGAATCCCCTGCCAGGCCCCACTGCTGGA...GTGGAAGCACATCAGTAAGTCGAAGCAAGTGACTGTGGATGTCTGATGTAGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CAA 90 bp | TGTAGCTGGCTCAGCTGGATTCTGGAAGTAGGCTGGGAAACACCTTaGTGCATACCTGACTCCACAATAGTCACTCCCGAATATTCAGTG | + |
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Preference number: 2 (lower is better) Translates to: CSWLSWILEVGWETP*CIPDSTIVTPEYSV Trigger: CACTGAATATTCGGGAGTGACTATTGTGGAGTCAGGTATGCACAAAGGTGTTTCCCAGCCTACTTCCAGAATCCAGCTGAGCCAGCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR GCA 90 bp | TTGCTTTCTGAGCAGATGGAAGCTATCACAGAGACCCAGAGATACAAGGGAAGGTGGAGACCCTTTCCTTaGAGCCCCCAAAGCATGTTT | + |
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Preference number: 2 (lower is better) Translates to: LLSEQMEAITETQRYKGRWRPFP*SPQSMF Trigger: AAACATGCTTTGGGGGCTGCAAGGAAAGGGTCTCCA...CCTTCCCTTGTATCTCTGGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR GCA 90 bp | CGGCATCAAAACCTGCCTTTCCATCTACATCAGACATCCACAGTCACTTGCTTCATGATAACCAGTCTCTaGTGTGGATCCAGGGAAGCC | + |
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Preference number: 2 (lower is better) Translates to: RHQNLPFHLHQTSTVTCFMITSL*CGSREA Trigger: GGCTTCCCTGGATCCACAGCAGAGACTGGTTATCAT...GAAGCAAGTGACTGTGGATGTCTGATGTAGATGGAAAGGCAGGTTTTGATGCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR CCA 90 bp | GCCGTCTCTCACCCGCACACTCAGGAATGTCAGGTGGGTGAGTTTTACAAACCTTTGTTCATCAGAAAATaGAGGACAAGCTCACCTCCA | + |
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Preference number: 2 (lower is better) Translates to: AVSHPHTQECQVGEFYKPLFIRK*RTSSPP Trigger: TGGAGGTGAGCTTGTCCTCCATTTTCTGATGAACAA...AGGTTTGTAAAACTCACCCACCTGACATTCCTGAGTGTGCGGGTGAGAGACGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR CCA 90 bp | CGGCATCAAAACCTGCCTTTCCATCTACATCAGACATCCACAGTCACTTGCTTCTGCTTTCTGAGCAGATaGAAGCTATCACAGAGACCC | + |
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Preference number: 2 (lower is better) Translates to: RHQNLPFHLHQTSTVTCFCFLSR*KLSQRP Trigger: GGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCA...GAAGCAAGTGACTGTGGATGTCTGATGTAGATGGAAAGGCAGGTTTTGATGCCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR TCA 90 bp | AGTAACCCACTTGACATGATTTGGATGTATTCAAAGGAAACACATACGACTTGTCCTCTGGGGCTGGGGTaGTGTGCAAGAGCAATGCTA | + |
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Preference number: 2 (lower is better) Translates to: SNPLDMIWMYSKETHTTCPLGLG*CARAML Trigger: TAGCATTGCTCTTGCACATCACCCCAGCCCCAGAGG...ACAAGTCGTATGTGTTTCCTTTGAATACATCCAAATCATGTCAAGTGGGTTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR GCA 90 bp | TTGCTTTCTGAGCAGATGGAAGCTATCACAGAGACCCAGAGATACAAGGGAAGGTGGGAAACACCTTTGTaGATACCTGACTCCACAATA | + |
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Preference number: 2 (lower is better) Translates to: LLSEQMEAITETQRYKGRWETPL*IPDSTI Trigger: TATTGTGGAGTCAGGTATGCACAAAGGTGTTTCCCA...CCTTCCCTTGTATCTCTGGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR TCA 90 bp | CATCTACATCAGACATCCACAGTCACTTGCTTCGACTTACTGATGTGCTTCCACCTCAATTTTGCTTTCTaGGCAGATGGAAGCTATCAC | + |
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Preference number: 2 (lower is better) Translates to: HLHQTSTVTCFDLLMCFHLNFAF*ADGSYH Trigger: GTGATAGCTTCCATCTGCTCAGAAAGCAAAATTGAG...GTGGAAGCACATCAGTAAGTCGAAGCAAGTGACTGTGGATGTCTGATGTAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR CCA 90 bp | AGTAACCCACTTGACATGATTTGGATGTATTCAAAGGAAACACATACGACTTGTCAGGTTAGATCCCTCTaGGGCTGGGGTGATGTGCAA | + |
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Preference number: 2 (lower is better) Translates to: SNPLDMIWMYSKETHTTCQVRSL*GWGDVQ Trigger: TTGCACATCACCCCAGCCCCAGAGGGATCTAACCTG...ACAAGTCGTATGTGTTTCCTTTGAATACATCCAAATCATGTCAAGTGGGTTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR TCA 90 bp | CCCCATTCCTCCCAGTTTCGACACTATCAGAGTCCAAAGAATAAGTCCATCATTATTTTCTCATCAACTTaGGACTTTGGGGAAACTGCA | + |
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Preference number: 2 (lower is better) Translates to: PHSSQFRHYQSPKNKSIIIFSST*DFGETA Trigger: TGCAGTTTCCCCAAAGTCTCAAGTTGATGAGAAAAT...AATGATGGACTTATTCTTTGGACTCTGATAGTGTCGAAACTGGGAGGAATGGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR GCA 90 bp | CGGCATCAAAACCTGCCTTTCCATCTACATCAGACATCCACAGTCACTTGCTTCATTGTCCTTTTGTTCTaGCTCTATTTTCTCATCAAC | + |
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Preference number: 2 (lower is better) Translates to: RHQNLPFHLHQTSTVTCFIVLLF*LYFLIN Trigger: GTTGATGAGAAAATAGAGGCAGAACAAAAGGACAAT...GAAGCAAGTGACTGTGGATGTCTGATGTAGATGGAAAGGCAGGTTTTGATGCCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR CCA 90 bp | AGTAACCCACTTGACATGATTTGGATGTATTCAAAGGAAACACATACGACTTGTATCAACTTGAGACTTTaGGGAAACTGCATCAACCAA | + |
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Preference number: 2 (lower is better) Translates to: SNPLDMIWMYSKETHTTCINLRL*GNCINQ Trigger: TTGGTTGATGCAGTTTCCCCAAAGTCTCAAGTTGAT...ACAAGTCGTATGTGTTTCCTTTGAATACATCCAAATCATGTCAAGTGGGTTACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR TCA 72 bp | CGCCAAGCATGCTCGGGCTGCACCAGAGCCTGGGCCTaGAACCAACCCTCTGGAACCACAGGGCTGCGGTGC | + |
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Preference number: 3 (lower is better) Translates to: RQACSGCTRAWA*NQPSGTTGLRC Trigger: GCACCGCAGCCCTGTGGTTCCAGAGGGTTGGTTTCAGGCCCAGGCTCTGGTGCAGCCCGAGCATGCTTGGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CCA 72 bp | GGGCTGCACCAGAGCCTGGGCCTGAAACCAACCCTCTaGAACCACAGGGCTGCGGTGCCTCGGACCAGGCTA | + |
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Preference number: 3 (lower is better) Translates to: GLHQSLGLKPTL*NHRAAVPRTRL Trigger: TAGCCTGGTCCGAGGCACCGCAGCCCTGTGGTTCCAGAGGGTTGGTTTCAGGCCCAGGCTCTGGTGCAGCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CCA 72 bp | CCTCCTCCTCCTGTCGGCATCTGGGCTCAGGCACGGTaGCCCACAGTGGAGACCCTTTCCTTGCAGCCCCCA | + |
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Preference number: 3 (lower is better) Translates to: PPPPVGIWAQAR*PTVETLSLQPP Trigger: TGGGGGCTGCAAGGAAAGGGTCTCCACTGTGGGCCACCGTGCCTGAGCCCAGATGCCGACAGGAGGAGGAGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR GCA 72 bp | AGGAATCTTCTCTGGGCGGCGTCACCACCATCAGGGTaGTCCAGGATGCCACGCCCAGCTTCCAGGCCTGTG | + |
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Preference number: 3 (lower is better) Translates to: RNLLWAASPPSG*SRMPRPASRPV Trigger: CACAGGCCTGGAAGCTGGGCGTGGCATCCTGGAGCACCCTGATGGTGGTGACGCCGCCCAGAGAAGATTCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR-3UTR CAA 90 bp | GCGGCGTCACCACCATCAGGGTGCTCCAGGATGCCACGCCCAGCTTCCAGGCCTGTTTTACTGAGGAGCTaGGAGGATCCCAGGGTGTCC | + |
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Preference number: 3 (lower is better) Translates to: AASPPSGCSRMPRPASRPVLLRS*EDPRVS Trigger: GGACACCCTGGGATCCTCCAAGCTCCTCAGTAAAAC...AGGCCTGGAAGCTGGGCGTGGCATCCTGGAGCACCCTGATGGTGGTGACGCCGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR GCA 72 bp | CCTGGGCCTGAAACCAACCCTCTGGAACCACAGGGCTaGGGTGCCTCGGACCAGGCTAGCTGTTTACCCAAC | + |
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Preference number: 3 (lower is better) Translates to: PGPETNPLEPQG*GASDQASCLPN Trigger: GTTGGGTAAACAGCTAGCCTGGTCCGAGGCACCGCAGCCCTGTGGTTCCAGAGGGTTGGTTTCAGGCCCAGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR GCA 72 bp | GAGGAGCTTGGAGGATCCCAGGGTGTCCCCCAAATGTaGTGTACCCTGGCCAACTGGGACCATGATGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: EELGGSQGVPQM*CTLANWDHDAS Trigger: GCTGGCATCATGGTCCCAGTTGGCCAGGGTACAGCACATTTGGGGGACACCCTGGGATCCTCCAAGCTCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CCA 72 bp | CTGTCGGCATCTGGGCTCAGGCACGGTGGCCCACAGTaGAGACCCTTTCCTTGCAGCCCCCAAAGCATGTTT | + |
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Preference number: 3 (lower is better) Translates to: LSASGLRHGGPQ*RPFPCSPQSMF Trigger: AAACATGCTTTGGGGGCTGCAAGGAAAGGGTCTCCACTGTGGGCCACCGTGCCTGAGCCCAGATGCCGACAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| 3UTR CCA 72 bp | GAGGATCCCAGGGTGTCCCCCAAATGTGCTGTACCCTaGCCAACTGGGACCATGATGCCAGCAGCCTCTGTG | + |
|
Preference number: 3 (lower is better) Translates to: EDPRVSPKCAVP*PTGTMMPAASV Trigger: CACAGAGGCTGCTGGCATCATGGTCCCAGTTGGCCAGGGTACAGCACATTTGGGGGACACCCTGGGATCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CCA 72 bp | TCACATTTAAACCTGCCTCCTCCTCCTGTCGGCATCTaGGCTCAGGCACGGTGGCCCACAGTGGAGACCCTT | + |
|
Preference number: 3 (lower is better) Translates to: SHLNLPPPPVGI*AQARWPTVETL Trigger: AAGGGTCTCCACTGTGGGCCACCGTGCCTGAGCCCAGATGCCGACAGGAGGAGGAGGCAGGTTTAAATGTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CCA 72 bp | GCAAGAGCAATGCTACCCAGCTTGTCCAGGGTGGTCTaGGGACCAGGGCAGTGTATGAACAGCTGGTCCAAC | + |
|
Preference number: 3 (lower is better) Translates to: ARAMLPSLSRVV*GPGQCMNSWSN Trigger: GTTGGACCAGCTGTTCATACACTGCCCTGGTCCCCAGACCACCCTGGACAAGCTGGGTAGCATTGCTCTTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR GCA 72 bp | CTCAGGCACGGTGGCCCACAGTGGAGACCCTTTCCTTaGAGCCCCCAAAGCATGTTTTTCCAAAGCATTCTT | + |
|
Preference number: 3 (lower is better) Translates to: LRHGGPQWRPFP*SPQSMFFQSIL Trigger: AAGAATGCTTTGGAAAAACATGCTTTGGGGGCTGCAAGGAAAGGGTCTCCACTGTGGGCCACCGTGCCTGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CCA 72 bp | ATAAAACTCAGCCTGCCACTTCCTTCACTCCAGCAGTaGGGCCTGGCAGGGGATTCTAAGAAGCAAGGGCTA | + |
|
Preference number: 3 (lower is better) Translates to: IKLSLPLPSLQQ*GLAGDSKKQGL Trigger: TAGCCCTTGCTTCTTAGAATCCCCTGCCAGGCCCCACTGCTGGAGTGAAGGAAGTGGCAGGCTGAGTTTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CCA 72 bp | AAGCCGTCTCTCACCCGCACACTCAGGAATGTCAGGTaGGTGAGTTTTACAAACCTCCTTCTCCACTTCGCC | + |
|
Preference number: 3 (lower is better) Translates to: KPSLTRTLRNVR*VSFTNLLLHFA Trigger: GGCGAAGTGGAGAAGGAGGTTTGTAAAACTCACCCACCTGACATTCCTGAGTGTGCGGGTGAGAGACGGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR GCA 72 bp | GCTGTGGATCCAGGGAAGCCCGTGTGCTCTCAATTTTaGTTTCTGAGCAGATGGAAGCTATCACAGAGACCC | + |
|
Preference number: 3 (lower is better) Translates to: AVDPGKPVCSQF*FLSRWKLSQRP Trigger: GGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAAAATTGAGAGCACACGGGCTTCCCTGGATCCACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR-3UTR CAA 90 bp | CGGCATCAAAACCTGCCTTTCCATCTACATCAGACATCCACAGTCACTTGCTTCCTGGCCCAGAACAGATaGAGCACATATGGGCATCAC | + |
|
Preference number: 3 (lower is better) Translates to: RHQNLPFHLHQTSTVTCFLAQNR*STYGHH Trigger: GTGATGCCCATATGTGCTCAATCTGTTCTGGGCCAG...GAAGCAAGTGACTGTGGATGTCTGATGTAGATGGAAAGGCAGGTTTTGATGCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR-3UTR CAA 90 bp | AGTAACCCACTTGACATGATTTGGATGTATTCAAAGGAAACACATACGACTTGTGGAGCAGGGGGCAGGTaGGTGCACAGCACCCTCCTG | + |
|
Preference number: 3 (lower is better) Translates to: SNPLDMIWMYSKETHTTCGAGGR*VHSTLL Trigger: CAGGAGGGTGCTGTGCACCAACCTGCCCCCTGCTCC...ACAAGTCGTATGTGTTTCCTTTGAATACATCCAAATCATGTCAAGTGGGTTACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR-3UTR CAA 90 bp | GCCGTCTCTCACCCGCACACTCAGGAATGTCAGGTGGGTGAGTTTTACAAACCTGTCCAGATGGATGAGTaGAAAGTACAACAGACTCTG | + |
|
Preference number: 3 (lower is better) Translates to: AVSHPHTQECQVGEFYKPVQMDE*KVQQTL Trigger: CAGAGTCTGTTGTACTTTCAACTCATCCATCTGGAC...AGGTTTGTAAAACTCACCCACCTGACATTCCTGAGTGTGCGGGTGAGAGACGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR TCA 72 bp | ATGATGCCAGCAGCCTCTGTGTCCAGATGGATGAGTTaGAAGTACAACAGACTCTGTCATCTGCAGGGGACA | + |
|
Preference number: 3 (lower is better) Translates to: MMPAASVSRWMS*KYNRLCHLQGT Trigger: TGTCCCCTGCAGATGACAGAGTCTGTTGTACTTTCAACTCATCCATCTGGACACAGAGGCTGCTGGCATCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR TCA 72 bp | ACATATTCTCCTGACATGCTGGCCATGACATCGTTCTaGGCCCAAGCAAGTGTCTCCAAAGGAGCAGAGCAA | + |
|
Preference number: 3 (lower is better) Translates to: TYSPDMLAMTSF*AQASVSKGAEQ Trigger: TTGCTCTGCTCCTTTGGAGACACTTGCTTGGGCTCAGAACGATGTCATGGCCAGCATGTCAGGAGAATATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CCA 72 bp | TGCTGTAGCTGGCTCAGCTGGATTCTGGAAGTAGGCTaGGAAACACCTTTGTGCATACCTGACTCCACAATA | + |
|
Preference number: 3 (lower is better) Translates to: CCSWLSWILEVG*ETPLCIPDSTI Trigger: TATTGTGGAGTCAGGTATGCACAAAGGTGTTTCCCAGCCTACTTCCAGAATCCAGCTGAGCCAGCTACAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CCA 72 bp | TTTGCACCTGCTTTCCATGATAACCAGTCTCTGCTGTaGATCCAGGGAAGCCCGTGTGCTCTCAATTTTGCT | + |
|
Preference number: 3 (lower is better) Translates to: FAPAFHDNQSLL*IQGSPCALNFA Trigger: AGCAAAATTGAGAGCACACGGGCTTCCCTGGATCCACAGCAGAGACTGGTTATCATGGAAAGCAGGTGCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR TCA 72 bp | ATCCAGGGAAGCCCGTGTGCTCTCAATTTTGCTTTCTaGGCAGATGGAAGCTATCACAGAGACCCAGAGATA | + |
|
Preference number: 3 (lower is better) Translates to: IQGSPCALNFAF*ADGSYHRDPEI Trigger: TATCTCTGGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAAAATTGAGAGCACACGGGCTTCCCTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR TCA 72 bp | TTTACAGCTCTGCTGCATACAGACAACATATTCTCCTaGCATGCTGGCCATGACATCGTTCTGAGCCCAAGC | + |
|
Preference number: 3 (lower is better) Translates to: FTALLHTDNIFS*HAGHDIVLSPS Trigger: GCTTGGGCTCAGAACGATGTCATGGCCAGCATGTCAGGAGAATATGTTGTCTGTATGCAGCAGAGCTGTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR GCA 72 bp | CTGCCTTTCCATCTACATCAGACATCCACAGTCACTTaGTTCGACTTACTGATGTGCTTCCACCTCCATCCA | + |
|
Preference number: 3 (lower is better) Translates to: LPFHLHQTSTVT*FDLLMCFHLHP Trigger: TGGATGGAGGTGGAAGCACATCAGTAAGTCGAAGCAAGTGACTGTGGATGTCTGATGTAGATGGAAAGGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR GCA 72 bp | AGCTGGATTCTGGAAGTAGGCTGGGAAACACCTTTGTaGATACCTGACTCCACAATAGTCACTCCCGAATAT | + |
|
Preference number: 3 (lower is better) Translates to: SWILEVGWETPL*IPDSTIVTPEY Trigger: ATATTCGGGAGTGACTATTGTGGAGTCAGGTATGCACAAAGGTGTTTCCCAGCCTACTTCCAGAATCCAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR-3UTR CAA 90 bp | CATCTACATCAGACATCCACAGTCACTTGCTTCGACTTACTGATGTGCTTCCACCATCAACTTGAGACTTaGGGGAAACTGCATCAACCA | + |
|
Preference number: 3 (lower is better) Translates to: HLHQTSTVTCFDLLMCFHHQLET*GKLHQP Trigger: TGGTTGATGCAGTTTCCCCAAAGTCTCAAGTTGATG...GTGGAAGCACATCAGTAAGTCGAAGCAAGTGACTGTGGATGTCTGATGTAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR TCA 72 bp | GACTCCACAATAGTCACTCCCGAATATTCAGTGGTATaGAAGAAATGTCTCCCATCACCACAGTGGCAAGGT | + |
|
Preference number: 3 (lower is better) Translates to: DSTIVTPEYSVV*KKCLPSPQWQG Trigger: ACCTTGCCACTGTGGTGATGGGAGACATTTCTTTCATACCACTGAATATTCGGGAGTGACTATTGTGGAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR-3UTR CAA 90 bp | TTCAGTGGTATGAAAGAAATGTCTCCCATCACCACAGTGGCAAGGTTGTGGAGTATCACTGTCCTATCATaGTCCTTTTGTTCTGCCTCT | + |
|
Preference number: 3 (lower is better) Translates to: FSGMKEMSPITTVARLWSITVLS*SFCSAS Trigger: AGAGGCAGAACAAAAGGACAATGATAGGACAGTGAT...ACTCCACAACCTTGCCACTGTGGTGATGGGAGACATTTCTTTCATACCACTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR-3UTR CAA 90 bp | TTGCTTTCTGAGCAGATGGAAGCTATCACAGAGACCCAGAGATACAAGGGAAGGAGAGACTTTCCTACTTaGTTCATCAGAAAATGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: LLSEQMEAITETQRYKGRRDFPT*FIRKWR Trigger: CCTCCATTTTCTGATGAACAAAGTAGGAAAGTCTCT...CCTTCCCTTGTATCTCTGGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR TCA 72 bp | CAAGGGAAGGCAGAGCCTCCAGTAACCCACTTGACATaGTTTGGATGTATTCAAAGGAAACACATACGACTT | + |
|
Preference number: 3 (lower is better) Translates to: QGKAEPPVTHLT*FGCIQRKHIRL Trigger: AAGTCGTATGTGTTTCCTTTGAATACATCCAAATCATGTCAAGTGGGTTACTGGAGGCTCTGCCTTCCCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR TCA 72 bp | AAGATGCTTGTTTACATCAAGTCCTTTTTAGGCATCTaGGAGGAAAACCACCTGCCTCTAGACACCTGCATC | + |
|
Preference number: 3 (lower is better) Translates to: KMLVYIKSFLGI*EENHLPLDTCI Trigger: GATGCAGGTGTCTAGAGGCAGGTGGTTTTCCTCTCAGATGCCTAAAAAGGACTTGATGTAAACAAGCATCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CCA 72 bp | GAAGGCAGAGCCTCCAGTAACCCACTTGACATGATTTaGATGTATTCAAAGGAAACACATACGACTTGTTCT | + |
|
Preference number: 3 (lower is better) Translates to: EGRASSNPLDMI*MYSKETHTTCS Trigger: AGAACAAGTCGTATGTGTTTCCTTTGAATACATCCAAATCATGTCAAGTGGGTTACTGGAGGCTCTGCCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR GCA 72 bp | AATTTGTTTTTCTTAAGGACACCTTTACAGCTCTGCTaGATACAGACAACATATTCTCCTGACATGCTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: NLFFLRTPLQLC*IQTTYSPDMLA Trigger: GGCCAGCATGTCAGGAGAATATGTTGTCTGTATGCAGCAGAGCTGTAAAGGTGTCCTTAAGAAAAACAAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CCA 72 bp | TTGTTCTGCCTCTATTTTCTCATCAACTTGAGACTTTaGGGAAACTGCATCAACCAACCAGAATACACACAC | + |
|
Preference number: 3 (lower is better) Translates to: LFCLYFLINLRL*GNCINQPEYTH Trigger: GTGTGTGTATTCTGGTTGGTTGATGCAGTTTCCCCAAAGTCTCAAGTTGATGAGAAAATAGAGGCAGAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR TCA 72 bp | ATGTATTCAAAGGAAACACATACGACTTGTTCTTTCTaGTCCTGGAATAAAACTCAGCCTGCCACTTCCTTC | + |
|
Preference number: 3 (lower is better) Translates to: MYSKETHTTCSF*SWNKTQPATSF Trigger: GAAGGAAGTGGCAGGCTGAGTTTTATTCCAGGATCAGAAAGAACAAGTCGTATGTGTTTCCTTTGAATACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR GCA 72 bp | AAAAATTTGTTTTTCTTAAGGACACCTTTACAGCTCTaGTGCATACAGACAACATATTCTCCTGACATGCTG | + |
|
Preference number: 3 (lower is better) Translates to: KNLFFLRTPLQL*CIQTTYSPDML Trigger: CAGCATGTCAGGAGAATATGTTGTCTGTATGCAGCAGAGCTGTAAAGGTGTCCTTAAGAAAAACAAATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | GCGGCGTCACCACCATCAGGGTGCTCCAGGATGCCACGCCCAGCTTCCAGGCCTGGAAACGCGCGGGCTTaGGGCGTGGCTCGAAGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: AASPPSGCSRMPRPASRPGNARA*GVARSA Trigger: TGCGCTTCGAGCCACGCCCCAAGCCCGCGCGTTTCC...AGGCCTGGAAGCTGGGCGTGGCATCCTGGAGCACCCTGATGGTGGTGACGCCGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | CCAGAGCCTGGGCCTGAAACCAACCCTCTGGAACCACAGGGCTGCGGTGCCTCGCGGTTTTGGGGTACTTaGGGTAGACGATGGTGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: PEPGPETNPLEPQGCGASRFWGT*GRRWWC Trigger: GCACCACCATCGTCTACCCCAAGTACCCCAAAACCG...CGAGGCACCGCAGCCCTGTGGTTCCAGAGGGTTGGTTTCAGGCCCAGGCTCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | AGATTGAGCACATATGGGCATCACAGTCTACCCAAGTTAACTCTGGCTTCTCCCGCTGCGAGCCCCCAGTaGCTGGGGCTAGGGCTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: RLSTYGHHSLPKLTLASPAASPQ*LGLGLG Trigger: CCCAAGCCCTAGCCCCAGCCACTGGGGGCTCGCAGC...GGGAGAAGCCAGAGTTAACTTGGGTAGACTGTGATGCCCATATGTGCTCAATCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | AGATTGAGCACATATGGGCATCACAGTCTACCCAAGTTAACTCTGGCTTCTCCCCGCGGGCTTGGGGCGTaGCTCGAAGCGCACTTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: RLSTYGHHSLPKLTLASPRGLGA*LEAHFR Trigger: GCGGAAGTGCGCTTCGAGCCACGCCCCAAGCCCGCG...GGGAGAAGCCAGAGTTAACTTGGGTAGACTGTGATGCCCATATGTGCTCAATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CAA 72 bp | GCTCAGGCACGGTGGCCCACAGTGGAGACCCTTTCCTaGCAGCCCCCAAAGCATGTTTTTCCAAAGCATTCT | + |
|
Preference number: 4 (lower is better) Translates to: AQARWPTVETLS*QPPKHVFPKHS Trigger: AGAATGCTTTGGAAAAACATGCTTTGGGGGCTGCAAGGAAAGGGTCTCCACTGTGGGCCACCGTGCCTGAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR TCA 90 bp | GCCGTCTCTCACCCGCACACTCAGGAATGTCAGGTGGGTGAGTTTTACAAACCTAGTTGGGGATACAGGTaGCTGTCTGGCTGCAGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: AVSHPHTQECQVGEFYKPSWGYR*LSGCRK Trigger: CTTCCTGCAGCCAGACAGTCACCTGTATCCCCAACT...AGGTTTGTAAAACTCACCCACCTGACATTCCTGAGTGTGCGGGTGAGAGACGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | AGATTGAGCACATATGGGCATCACAGTCTACCCAAGTTAACTCTGGCTTCTCCCTGCCCAGGAACTCCGTaGCCTCGAGCTCCACACTGG | + |
|
Preference number: 4 (lower is better) Translates to: RLSTYGHHSLPKLTLASPCPGTP*PRAPHW Trigger: CCAGTGTGGAGCTCGAGGCCACGGAGTTCCTGGGCA...GGGAGAAGCCAGAGTTAACTTGGGTAGACTGTGATGCCCATATGTGCTCAATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR GCA 90 bp | TTCAGTGGTATGAAAGAAATGTCTCCCATCACCACAGTGGCAAGGTTGTGGAGTAGTTCAGGGACATCCTaGAGGCTCAGCCGGCCCACC | + |
|
Preference number: 4 (lower is better) Translates to: FSGMKEMSPITTVARLWSSSGTS*RLSRPT Trigger: GGTGGGCCGGCTGAGCCTGCAGGATGTCCCTGAACT...ACTCCACAACCTTGCCACTGTGGTGATGGGAGACATTTCTTTCATACCACTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | CCACAGTGGCAAGGTTGTGGAGTCTACGTGTCACTCCCTACTCCTGAATTCATCTGGTGTAGACGGTTTTaGGGTACTTGGGGTAGACGA | + |
|
Preference number: 4 (lower is better) Translates to: PQWQGCGVYVSLPTPEFIWCRRF*GTWGRR Trigger: TCGTCTACCCCAAGTACCCCAAAACCGTCTACACCA...GATGAATTCAGGAGTAGGGAGTGACACGTAGACTCCACAACCTTGCCACTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CAA 72 bp | TGCTGTGGATCCAGGGAAGCCCGTGTGCTCTCAATTTaGCTTTCTGAGCAGATGGAAGCTATCACAGAGACC | + |
|
Preference number: 4 (lower is better) Translates to: CCGSREARVLSI*LSEQMEAITET Trigger: GGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAAAATTGAGAGCACACGGGCTTCCCTGGATCCACAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CAA 72 bp | CATGATGCCAGCAGCCTCTGTGTCCAGATGGATGAGTaGAAAGTACAACAGACTCTGTCATCTGCAGGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: HDASSLCVQMDE*KVQQTLSSAGD Trigger: GTCCCCTGCAGATGACAGAGTCTGTTGTACTTTCAACTCATCCATCTGGACACAGAGGCTGCTGGCATCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | CATCTACATCAGACATCCACAGTCACTTGCTTCGACTTACTGATGTGCTTCCACATACAGGTGACTGTCTaGCTGCAGGAAGCCACCACC | + |
|
Preference number: 4 (lower is better) Translates to: HLHQTSTVTCFDLLMCFHIQVTV*LQEATT Trigger: GGTGGTGGCTTCCTGCAGCCAGACAGTCACCTGTAT...GTGGAAGCACATCAGTAAGTCGAAGCAAGTGACTGTGGATGTCTGATGTAGATG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CAA 72 bp | CCTGCCTTTCCATCTACATCAGACATCCACAGTCACTaGCTTCGACTTACTGATGTGCTTCCACCTCCATCC | + |
|
Preference number: 4 (lower is better) Translates to: PAFPSTSDIHSH*LRLTDVLPPPS Trigger: GGATGGAGGTGGAAGCACATCAGTAAGTCGAAGCAAGTGACTGTGGATGTCTGATGTAGATGGAAAGGCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | TCAATTTTGCTTTCTGAGCAGATGGAAGCTATCACAGAGACCCAGAGATACAAGGTGGGTCAGAGATGCTaGGTTCGGGACTATAGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: SILLSEQMEAITETQRYKVGQRC*VRDYRG Trigger: ACCCCTATAGTCCCGAACCCAGCATCTCTGACCCAC...CTTGTATCTCTGGGTCTCTGTGATAGCTTCCATCTGCTCAGAAAGCAAAATTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | CATCTACATCAGACATCCACAGTCACTTGCTTCGACTTACTGATGTGCTTCCACCTTTATTTCCTTTGGTaGCAAGGGGTCAAACTCAAC | + |
|
Preference number: 4 (lower is better) Translates to: HLHQTSTVTCFDLLMCFHLYFLW*QGVKLN Trigger: GTTGAGTTTGACCCCTTGCCACCAAAGGAAATAAAG...GTGGAAGCACATCAGTAAGTCGAAGCAAGTGACTGTGGATGTCTGATGTAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CCA 90 bp | CATCTACATCAGACATCCACAGTCACTTGCTTCGACTTACTGATGTGCTTCCACATACTTTATTTCCTTTaGTGGCAAGGGGTCAAACTC | + |
|
Preference number: 4 (lower is better) Translates to: HLHQTSTVTCFDLLMCFHILYFL*WQGVKL Trigger: GAGTTTGACCCCTTGCCACCAAAGGAAATAAAGTAT...GTGGAAGCACATCAGTAAGTCGAAGCAAGTGACTGTGGATGTCTGATGTAGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| 3UTR CAA 72 bp | TTTGTTCTGCCTCTATTTTCTCATCAACTTGAGACTTaGGGGAAACTGCATCAACCAACCAGAATACACACA | + |
|
Preference number: 4 (lower is better) Translates to: FVLPLFSHQLET*GKLHQPTRIHT Trigger: TGTGTGTATTCTGGTTGGTTGATGCAGTTTCCCCAAAGTCTCAAGTTGATGAGAAAATAGAGGCAGAACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS-3UTR CAA 90 bp | CCACAGTGGCAAGGTTGTGGAGTCTACGTGTCACTCCCTACTCCTGAATTCATCAGGAAACGCGCGGGCTaGGGGCGTGGCTCGAAGCGC | + |
|
Preference number: 5 (lower is better) Translates to: PQWQGCGVYVSLPTPEFIRKRAG*GRGSKR Trigger: GCGCTTCGAGCCACGCCCCAAGCCCGCGCGTTTCCT...GATGAATTCAGGAGTAGGGAGTGACACGTAGACTCCACAACCTTGCCACTGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS TCA 90 bp | GCACTTCCGCCTTATAGTTTCGCCAAGTGCAGTTGGGGATACAGGTaGCTGTCTGGCTGCAGGAAGCCACCACCAGACCCAGGGGCATCT | + |
|
Preference number: 5 (lower is better) Translates to: ALPPYSFAKCSWGYR*LSGCRKPPPDPGAS Trigger: AGATGCCCCTGGGTCTGGTGGTGGCTTCCTGCAGCCAGACAGTCACCTGTATCCCCAACTGCACTTGGCGAAACTATAAGGCGGAAGTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS CCA 72 bp | CGCCGAAGGACAGGGGACAGAGTCTCGGTGAGCAGATaGCAGCTAGCGAGTGGGTCAGAGATGCTGGGTTCG | + |
|
Preference number: 6 (lower is better) Translates to: RRRTGDRVSVSR*QLASGSEMLGS Trigger: CGAACCCAGCATCTCTGACCCACTCGCTAGCTGCCATCTGCTCACCGAGACTCTGTCCCCTGTCCTTCGGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
||
| CDS CCA 72 bp | GATGGTGGTGCTGAGGAAACGCGCGGGCTTGGGGCGTaGCTCGAAGCGCACTTCCGCCTTATAGTTTCGCCA | + |
|
Preference number: 6 (lower is better) Translates to: DGGAEETRGLGA*LEAHFRLIVSP Trigger: TGGCGAAACTATAAGGCGGAAGTGCGCTTCGAGCCACGCCCCAAGCCCGCGCGTTTCCTCAGCACCACCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| CDS CCA 72 bp | GGACAGAGTCTCGGTGAGCAGATGGCAGCTAGCGAGTaGGTCAGAGATGCTGGGTTCGGGACTATAGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: GQSLGEQMAASE*VRDAGFGTIGV Trigger: GACCCCTATAGTCCCGAACCCAGCATCTCTGACCCACTCGCTAGCTGCCATCTGCTCACCGAGACTCTGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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| CDS TCA 72 bp | CCTTATAGTTTCGCCAAGTGCAGTTGGGGATACAGGTaGCTGTCTGGCTGCAGGAAGCCACCACCAGACCCA | + |
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Preference number: 6 (lower is better) Translates to: PYSFAKCSWGYR*LSGCRKPPPDP Trigger: TGGGTCTGGTGGTGGCTTCCTGCAGCCAGACAGTCACCTGTATCCCCAACTGCACTTGGCGAAACTATAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021207.7 |
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