RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RFK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024712

Ensembl transcript IDs: ENSMUST00000025617.4

Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGCACTTCCTaGAAAGCCTCTGTTCAGCACAGGCTGGCTGGGCTCACCAGTGCC +
Preference number: 1 (lower is better)
Translates to: LCVCVCVCVCVWCTS*KASVQHRLAGLTSA
Trigger: GGCACTGGTGAGCCCAGCCAGCCTGTGCTGAACAGAGGCTTTTCAGGAAGTGCACCACACACACACACACACACACACACACACACAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 90 bp TGCCCCGGTGAGGCTGAAGCAATCGAGCATCCAATGTCAACCTTCTaGCAACATAAACAACTCAGGCCACCAAGAGGGAAAGGGGAGGAA +
Preference number: 1 (lower is better)
Translates to: CPGEAEAIEHPMSTF*QHKQLRPPRGKGEE
Trigger: TTCCTCCCCTTTCCCTCTTGGTGGCCTGAGTTGTTTATGTTGGCAGAAGGTTGACATTGGATGCTCGATTGCTTCAGCCTCACCGGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CCA 90 bp GCTGGCTGGGCTCACCAGTGCCAGCACACTCAGTCACAAGAACTATaGTCAGTCCTCATTTTCCTCAGGAACTTGCTTTTCCACCCACAC +
Preference number: 1 (lower is better)
Translates to: AGWAHQCQHTQSQEL*SVLIFLRNLLFHPH
Trigger: GTGTGGGTGGAAAAGCAAGTTCCTGAGGAAAATGAGGACTGACCATAGTTCTTGTGACTGAGTGTGCTGGCACTGGTGAGCCCAGCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 90 bp TTCCTGAAAAGCCTCTGTTCAGCACAGGCTGGCTGGGCTCACCAGTaGCAGCACACTCAGTCACAAGAACTATGGTCAGTCCTCATTTTC +
Preference number: 1 (lower is better)
Translates to: FLKSLCSAQAGWAHQ*QHTQSQELWSVLIF
Trigger: GAAAATGAGGACTGACCATAGTTCTTGTGACTGAGTGTGCTGGCACTGGTGAGCCCAGCCAGCCTGTGCTGAACAGAGGCTTTTCAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 90 bp TCTCTGGGTGTCTGTGTGTTGTTAAATTACCTTTCTATTTTCACGTaGATGCTCCCACTTAGGCAGTGCCTCTGCCCCAGCAAACCTGTT +
Preference number: 1 (lower is better)
Translates to: SLGVCVLLNYLSIFT*MLPLRQCLCPSKPV
Trigger: AACAGGTTTGCTGGGGCAGAGGCACTGCCTAAGTGGGAGCATGCACGTGAAAATAGAAAGGTAATTTAACAACACACAGACACCCAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 90 bp TACCTTTCTATTTTCACGTGCATGCTCCCACTTAGGCAGTGCCTCTaGCCCAGCAAACCTGTTGCCATTCAACAAATGATGATTCAATGC +
Preference number: 1 (lower is better)
Translates to: YLSIFTCMLPLRQCL*PSKPVAIQQMMIQC
Trigger: GCATTGAATCATCATTTGTTGAATGGCAACAGGTTTGCTGGGGCAGAGGCACTGCCTAAGTGGGAGCATGCACGTGAAAATAGAAAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR TCA 90 bp AGCATTGGGACACTACCAGGAAGTGACCTCAGGGGGAGTCGTGAGTaGCTCAAGGAAGTTTGCAGGATTGTAAAAATATATCAATGCACA +
Preference number: 1 (lower is better)
Translates to: SIGTLPGSDLRGSRE*LKEVCRIVKIYQCT
Trigger: TGTGCATTGATATATTTTTACAATCCTGCAAACTTCCTTGAGTCACTCACGACTCCCCCTGAGGTCACTTCCTGGTAGTGTCCCAATGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 90 bp TTAAATTACCTTTCTATTTTCACGTGCATGCTCCCACTTAGGCAGTaGCTCTGCCCCAGCAAACCTGTTGCCATTCAACAAATGATGATT +
Preference number: 1 (lower is better)
Translates to: LNYLSIFTCMLPLRQ*LCPSKPVAIQQMMI
Trigger: AATCATCATTTGTTGAATGGCAACAGGTTTGCTGGGGCAGAGGCACTGCCTAAGTGGGAGCATGCACGTGAAAATAGAAAGGTAATTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR-3UTR GCA 90 bp TTCTGCCAACATAAACAACTCAGGCCACCAAGAGGGAAAGGGGAGGAACCAGGGGGCTGGGCTCACCAGTaGCAGCACACTCAGTCACAA +
Preference number: 2 (lower is better)
Translates to: FCQHKQLRPPRGKGEEPGGWAHQ*QHTQSQ
Trigger: TTGTGACTGAGTGTGCTGGCACTGGTGAGCCCAGCC...CCCTGGTTCCTCCCCTTTCCCTCTTGGTGGCCTGAGTTGTTTATGTTGGCAGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CAA 90 bp AGGCGATCAAGGCAACTTCAACCTGAAGTAACTGCACACAGAGCATaGGGACACTACCAGGAAGTGACCTCAGGGGGAGTCGTGAGTGAC +
Preference number: 2 (lower is better)
Translates to: RRSRQLQPEVTAHRA*GHYQEVTSGGVVSD
Trigger: GTCACTCACGACTCCCCCTGAGGTCACTTCCTGGTAGTGTCCCAATGCTCTGTGTGCAGTTACTTCAGGTTGAAGTTGCCTTGATCGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR-3UTR TCA 90 bp TCAGTGGTCACACTTGCCTGGCGTGTAAGGCACTGGGTTGGATCCTCAGTACTTGTGTGGTGCACTTCCTaGAAAGCCTCTGTTCAGCAC +
Preference number: 2 (lower is better)
Translates to: SVVTLAWRVRHWVGSSVLVWCTS*KASVQH
Trigger: GTGCTGAACAGAGGCTTTTCAGGAAGTGCACCACAC...AAGTACTGAGGATCCAACCCAGTGCCTTACACGCCAGGCAAGTGTGACCACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR-3UTR TCA 90 bp CCACTTAGGCAGTGCCTCTGCCCCAGCAAACCTGTTGCCATTCAACAAATGATGCTGCTGGAGACCACTTaGCAGCTACAGGAAAACGCT +
Preference number: 2 (lower is better)
Translates to: PLRQCLCPSKPVAIQQMMLLETT*QLQENA
Trigger: AGCGTTTTCCTGTAGCTGTCAAGTGGTCTCCAGCAG...CATCATTTGTTGAATGGCAACAGGTTTGCTGGGGCAGAGGCACTGCCTAAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR-3UTR GCA 90 bp TTCAATGCCCCGGTGAGGCTGAAGCAATCGAGCATCCAATGTCAACCTTCTGCCTTTTCCTCAGGAACTTaGTTTTCCACCCACACTCAC +
Preference number: 2 (lower is better)
Translates to: FNAPVRLKQSSIQCQPSAFSSGT*FSTHTH
Trigger: GTGAGTGTGGGTGGAAAAGCAAGTTCCTGAGGAAAA...GGCAGAAGGTTGACATTGGATGCTCGATTGCTTCAGCCTCACCGGGGCATTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR-3UTR TCA 90 bp TTCTGCCAACATAAACAACTCAGGCCACCAAGAGGGAAAGGGGAGGAACCAGGGGAACTGTACTTACTTTaGAAGCACAGGACCACACTT +
Preference number: 2 (lower is better)
Translates to: FCQHKQLRPPRGKGEEPGELYLL*KHRTTL
Trigger: AAGTGTGGTCCTGTGCTTTCAAAGTAAGTACAGTTC...CCCTGGTTCCTCCCCTTTCCCTCTTGGTGGCCTGAGTTGTTTATGTTGGCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR-3UTR GCA 90 bp GCCCCGGTGAGGCTGAAGCAATCGAGCATCCAATGTCAACCTTCTGCCAACATAGGAGATATAGAGATATaGAACTGGAACTTATCCGGT +
Preference number: 2 (lower is better)
Translates to: APVRLKQSSIQCQPSANIGDIEI*NWNLSG
Trigger: ACCGGATAAGTTCCAGTTGCATATCTCTATATCTCC...TATGTTGGCAGAAGGTTGACATTGGATGCTCGATTGCTTCAGCCTCACCGGGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CAA 90 bp AGCTTGTTTTATTTTTCTTTACTTGAACCTGACCACCATTTAGTTTaGAGCAGAATGGCACACACACAAGTAATCTCTGGGCGACATGGG +
Preference number: 2 (lower is better)
Translates to: SLFYFSLLEPDHHLV*SRMAHTQVISGRHG
Trigger: CCCATGTCGCCCAGAGATTACTTGTGTGTGTGCCATTCTGCTCAAAACTAAATGGTGGTCAGGTTCAAGTAAAGAAAAATAAAACAAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR-3UTR CCA 90 bp TATGCAACTGGAACTTATCCGGTTCTGAAGCTACAAGGACTTTTAAATTATGTTAATCTCTGGGCGACATaGGAAGAAAATAAACCAAAG +
Preference number: 2 (lower is better)
Translates to: YATGTYPVLKLQGLLNYVNLWAT*EENKPK
Trigger: CTTTGGTTTATTTTCTTCCCATGTCGCCCAGAGATT...AACATAATTTAAAAGTCCTTGTAGCTTCAGAACCGGATAAGTTCCAGTTGCATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CCA 72 bp AGGGGGCGGGAGCCTAGCTCAGTGGTCACACTTGCCTaGCGTGTAAGGCACTGGGTTGGATCCTCAGTACTT +
Preference number: 3 (lower is better)
Translates to: RGREPSSVVTLA*RVRHWVGSSVL
Trigger: AAGTACTGAGGATCCAACCCAGTGCCTTACACGCCAGGCAAGTGTGACCACTGAGCTAGGCTCCCGCCCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CCA 72 bp GGTGCACTTCCTGAAAAGCCTCTGTTCAGCACAGGCTaGCTGGGCTCACCAGTGCCAGCACACTCAGTCACA +
Preference number: 3 (lower is better)
Translates to: GALPEKPLFSTG*LGSPVPAHSVT
Trigger: TGTGACTGAGTGTGCTGGCACTGGTGAGCCCAGCCAGCCTGTGCTGAACAGAGGCTTTTCAGGAAGTGCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 72 bp AGCCTCTGTTCAGCACAGGCTGGCTGGGCTCACCAGTaGCAGCACACTCAGTCACAAGAACTATGGTCAGTC +
Preference number: 3 (lower is better)
Translates to: SLCSAQAGWAHQ*QHTQSQELWSV
Trigger: GACTGACCATAGTTCTTGTGACTGAGTGTGCTGGCACTGGTGAGCCCAGCCAGCCTGTGCTGAACAGAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR TCA 72 bp TGTGTGTGTGTGTGTGTGTGTGTGTGGTGCACTTCCTaGAAAGCCTCTGTTCAGCACAGGCTGGCTGGGCTC +
Preference number: 3 (lower is better)
Translates to: CVCVCVCVWCTS*KASVQHRLAGL
Trigger: GAGCCCAGCCAGCCTGTGCTGAACAGAGGCTTTTCAGGAAGTGCACCACACACACACACACACACACACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CCA 72 bp CACTTCCTGAAAAGCCTCTGTTCAGCACAGGCTGGCTaGGCTCACCAGTGCCAGCACACTCAGTCACAAGAA +
Preference number: 3 (lower is better)
Translates to: HFLKSLCSAQAG*AHQCQHTQSQE
Trigger: TTCTTGTGACTGAGTGTGCTGGCACTGGTGAGCCCAGCCAGCCTGTGCTGAACAGAGGCTTTTCAGGAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR TCA 72 bp GGGATGTTGCTCAGCCATAGAACACATTCACAGGGCTaGGTGAGTCCCATCCCTCCCCACACCACTACTTCT +
Preference number: 3 (lower is better)
Translates to: GMLLSHRTHSQG*VSPIPPHTTTS
Trigger: AGAAGTAGTGGTGTGGGGAGGGATGGGACTCACTCAGCCCTGTGAATGTGTTCTATGGCTGAGCAACATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 72 bp ATTTTCACGTGCATGCTCCCACTTAGGCAGTGCCTCTaGCCCAGCAAACCTGTTGCCATTCAACAAATGATG +
Preference number: 3 (lower is better)
Translates to: IFTCMLPLRQCL*PSKPVAIQQMM
Trigger: CATCATTTGTTGAATGGCAACAGGTTTGCTGGGGCAGAGGCACTGCCTAAGTGGGAGCATGCACGTGAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 72 bp CTTTCTATTTTCACGTGCATGCTCCCACTTAGGCAGTaGCTCTGCCCCAGCAAACCTGTTGCCATTCAACAA +
Preference number: 3 (lower is better)
Translates to: LSIFTCMLPLRQ*LCPSKPVAIQQ
Trigger: TTGTTGAATGGCAACAGGTTTGCTGGGGCAGAGGCACTGCCTAAGTGGGAGCATGCACGTGAAAATAGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CCA 72 bp AGTGGTCACACTTGCCTGGCGTGTAAGGCACTGGGTTaGATCCTCAGTACTTTGAAGAAAAGCAAAAGCCCT +
Preference number: 3 (lower is better)
Translates to: SGHTCLACKALG*ILSTLKKSKSP
Trigger: AGGGCTTTTGCTTTTCTTCAAAGTACTGAGGATCCAACCCAGTGCCTTACACGCCAGGCAAGTGTGACCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 72 bp GAGGCTGAAGCAATCGAGCATCCAATGTCAACCTTCTaGCAACATAAACAACTCAGGCCACCAAGAGGGAAA +
Preference number: 3 (lower is better)
Translates to: EAEAIEHPMSTF*QHKQLRPPRGK
Trigger: TTTCCCTCTTGGTGGCCTGAGTTGTTTATGTTGGCAGAAGGTTGACATTGGATGCTCGATTGCTTCAGCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR GCA 72 bp GTCTGTGTGTTGTTAAATTACCTTTCTATTTTCACGTaGATGCTCCCACTTAGGCAGTGCCTCTGCCCCAGC +
Preference number: 3 (lower is better)
Translates to: VCVLLNYLSIFT*MLPLRQCLCPS
Trigger: GCTGGGGCAGAGGCACTGCCTAAGTGGGAGCATGCACGTGAAAATAGAAAGGTAATTTAACAACACACAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CCA 72 bp GCTCACCAGTGCCAGCACACTCAGTCACAAGAACTATaGTCAGTCCTCATTTTCCTCAGGAACTTGCTTTTC +
Preference number: 3 (lower is better)
Translates to: AHQCQHTQSQEL*SVLIFLRNLLF
Trigger: GAAAAGCAAGTTCCTGAGGAAAATGAGGACTGACCATAGTTCTTGTGACTGAGTGTGCTGGCACTGGTGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR TCA 72 bp ACACTACCAGGAAGTGACCTCAGGGGGAGTCGTGAGTaGCTCAAGGAAGTTTGCAGGATTGTAAAAATATAT +
Preference number: 3 (lower is better)
Translates to: TLPGSDLRGSRE*LKEVCRIVKIY
Trigger: ATATATTTTTACAATCCTGCAAACTTCCTTGAGTCACTCACGACTCCCCCTGAGGTCACTTCCTGGTAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CCA 72 bp AGTTTTGAGCAGAATGGCACACACACAAGTAATCTCTaGGCGACATGGGAAGAAAATAAACCAAAGTCACAA +
Preference number: 3 (lower is better)
Translates to: SFEQNGTHTSNL*ATWEENKPKSQ
Trigger: TTGTGACTTTGGTTTATTTTCTTCCCATGTCGCCCAGAGATTACTTGTGTGTGTGCCATTCTGCTCAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR TCA 72 bp TTAAATACAGGATTTCCAACATCAAAAATTCTATTCTaGAGGCTAGGGATGTTGCTCAGCCATAGAACACAT +
Preference number: 3 (lower is better)
Translates to: LNTGFPTSKILF*RLGMLLSHRTH
Trigger: ATGTGTTCTATGGCTGAGCAACATCCCTAGCCTTCAGAATAGAATTTTTGATGTTGGAAATCCTGTATTTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
CDS-3UTR CCA 90 bp CTGGCTGGGCTCACCAGTGCCAGCACACTCAGTCACAAGAACTATGGTCAGTCCCTCACCACCATTTTATaGACATCGCCGCTCCCAACG +
Preference number: 4 (lower is better)
Translates to: LAGLTSASTLSHKNYGQSLTTIL*TSPLPT
Trigger: CGTTGGGAGCGGCGATGTCCATAAAATGGTGGTGAG...GGACTGACCATAGTTCTTGTGACTGAGTGTGCTGGCACTGGTGAGCCCAGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CAA 72 bp AGGCAACTTCAACCTGAAGTAACTGCACACAGAGCATaGGGACACTACCAGGAAGTGACCTCAGGGGGAGTC +
Preference number: 4 (lower is better)
Translates to: RQLQPEVTAHRA*GHYQEVTSGGV
Trigger: GACTCCCCCTGAGGTCACTTCCTGGTAGTGTCCCAATGCTCTGTGTGCAGTTACTTCAGGTTGAAGTTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CAA 72 bp ACACATGCAGAGACCAAGTCTCTGGGTGTCTGTGTGTaGTTAAATTACCTTTCTATTTTCACGTGCATGCTC +
Preference number: 4 (lower is better)
Translates to: THAETKSLGVCV*LNYLSIFTCML
Trigger: GAGCATGCACGTGAAAATAGAAAGGTAATTTAACAACACACAGACACCCAGAGACTTGGTCTCTGCATGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4
3UTR CAA 72 bp TATTTTTCTTTACTTGAACCTGACCACCATTTAGTTTaGAGCAGAATGGCACACACACAAGTAATCTCTGGG +
Preference number: 4 (lower is better)
Translates to: YFSLLEPDHHLV*SRMAHTQVISG
Trigger: CCCAGAGATTACTTGTGTGTGTGCCATTCTGCTCAAAACTAAATGGTGGTCAGGTTCAAGTAAAGAAAAATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025617.4