Pregenerated sensors for RFESD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043190Ensembl transcript IDs: ENSMUST00000050997.2, ENSMUST00000179078.9
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTGTGTGCAGGTGCCCACAGAGACCAGAAGAGGGCATCATCCCTTaGAGGGGGAATCAGATCATAGGGAACTTTGAGCCACTTTATATA | + |
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Preference number: 1 (lower is better) Translates to: CVCRCPQRPEEGIIP*RGNQIIGNFEPLYI Trigger: TATATAAAGTGGCTCAAAGTTCCCTATGATCTGATTCCCCCTCCAAGGGATGATGCCCTCTTCTGGTCTCTGTGGGCACCTGCACACACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| 3UTR GCA 90 bp | AAGTCAGCAACCTGTGGACACATCAATGCAAGAGGAACAGAGGACTaGTGGGAACTGTTGAAGCGACTGAGTTTGAATTATGAAAACTTT | + |
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Preference number: 1 (lower is better) Translates to: KSATCGHINARGTED*WELLKRLSLNYENF Trigger: AAAGTTTTCATAATTCAAACTCAGTCGCTTCAACAGTTCCCAGCAGTCCTCTGTTCCTCTTGCATTGATGTGTCCACAGGTTGCTGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR-3UTR TCA 90 bp | GTGCAGGTGCCCACAGAGACCAGAAGAGGGCATCATCCCTTGGAGGGGGAATCATCTGCAGCCCCTGCCTaGCAAGACACAGGTACATAT | + |
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Preference number: 2 (lower is better) Translates to: VQVPTETRRGHHPLEGESSAAPA*QDTGTY Trigger: ATATGTACCTGTGTCTTGTCAGGCAGGGGCTGCAGA...TGATTCCCCCTCCAAGGGATGATGCCCTCTTCTGGTCTCTGTGGGCACCTGCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| 3UTR-3UTR GCA 90 bp | TACGTTTTCCTGGGTCTTCCTATCTATAACTTCCCAGCCCCCTTCTTTGATAGGCCACTGGCCCATCTCTaGAGCCCCTGCCTGACAAGA | + |
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Preference number: 2 (lower is better) Translates to: YVFLGLPIYNFPAPFFDRPLAHL*SPCLTR Trigger: TCTTGTCAGGCAGGGGCTGCAGAGATGGGCCAGTGG...CCTATCAAAGAAGGGGGCTGGGAAGTTATAGATAGGAAGACCCAGGAAAACGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR-3UTR GCA 90 bp | TACGTTTTCCTGGGTCTTCCTATCTATAACTTCCCAGCCCCCTTCTTTGATAGGCATCTCTGCAGCCCCTaGCTGACAAGACACAGGTAC | + |
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Preference number: 2 (lower is better) Translates to: YVFLGLPIYNFPAPFFDRHLCSP*LTRHRY Trigger: GTACCTGTGTCTTGTCAGGCAGGGGCTGCAGAGATG...CCTATCAAAGAAGGGGGCTGGGAAGTTATAGATAGGAAGACCCAGGAAAACGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR-3UTR GCA 90 bp | ATCATCCCTTGGAGGGGGAATCAGATCATAGGGAACTTTGAGCCACTTTATATACCACTGGCCCATCTCTaGAGCCCCTGCCTGACAAGA | + |
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Preference number: 2 (lower is better) Translates to: IIPWRGNQIIGNFEPLYIPLAHL*SPCLTR Trigger: TCTTGTCAGGCAGGGGCTGCAGAGATGGGCCAGTGG...TATATAAAGTGGCTCAAAGTTCCCTATGATCTGATTCCCCCTCCAAGGGATGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| 3UTR-3UTR GCA 90 bp | ATCATCCCTTGGAGGGGGAATCAGATCATAGGGAACTTTGAGCCACTTTATATACATCTCTGCAGCCCCTaGCTGACAAGACACAGGTAC | + |
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Preference number: 2 (lower is better) Translates to: IIPWRGNQIIGNFEPLYIHLCSP*LTRHRY Trigger: GTACCTGTGTCTTGTCAGGCAGGGGCTGCAGAGATG...TATATAAAGTGGCTCAAAGTTCCCTATGATCTGATTCCCCCTCCAAGGGATGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| 3UTR-3UTR GCA 90 bp | TACGTTTTCCTGGGTCTTCCTATCTATAACTTCCCAGCCCCCTTCTTTGATAGGCTGTGGACACATCAATaGAAGAGGAACAGAGGACTG | + |
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Preference number: 2 (lower is better) Translates to: YVFLGLPIYNFPAPFFDRLWTHQ*KRNRGL Trigger: CAGTCCTCTGTTCCTCTTGCATTGATGTGTCCACAG...CCTATCAAAGAAGGGGGCTGGGAAGTTATAGATAGGAAGACCCAGGAAAACGTA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR-3UTR GCA 90 bp | ATAATGTACAGATGCCAATCAGTCCTGAGAAATATGGAATGTATCCTGTTGACCACTTGTGTGTGCAGGTaGCCACAGAGACCAGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: IMYRCQSVLRNMECILLTTCVCR*PQRPEE Trigger: CTCTTCTGGTCTCTGTGGGCACCTGCACACACAAGT...GGTCAACAGGATACATTCCATATTTCTCAGGACTGATTGGCATCTGTACATTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR-3UTR TCA 90 bp | CTCAAGCCTATAATGTACAGATGCCAATCAGTCCTGAGAAATATGGAATGTATCCCTGGGTGGGGGCCCTaGAGTCATACTAAAGTAAAT | + |
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Preference number: 2 (lower is better) Translates to: LKPIMYRCQSVLRNMECIPGWGP*SHTKVN Trigger: ATTTACTTTAGTATGACTTCAGGGCCCCCACCCAGG...GATACATTCCATATTTCTCAGGACTGATTGGCATCTGTACATTATAGGCTTGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR-3UTR GCA 90 bp | CTGTTGACCTATAATGTACAGATGCCAATCAGTCCTGAGAAATATGGAATGTATCCTATAATGTACAGATaGCAATCAGTCCTGAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: LLTYNVQMPISPEKYGMYPIMYR*QSVLRN Trigger: ATTTCTCAGGACTGATTGGCATCTGTACATTATAGG...ATACATTCCATATTTCTCAGGACTGATTGGCATCTGTACATTATAGGTCAACAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR TCA 72 bp | CTAGGAACTGAATTCAGGTGCTCTGAAAGAACAGCATaGGCCCTTAGCCACTGGCCCATCTCTGCAGCCCCT | + |
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Preference number: 3 (lower is better) Translates to: LGTEFRCSERTA*ALSHWPISAAP Trigger: AGGGGCTGCAGAGATGGGCCAGTGGCTAAGGGCTCATGCTGTTCTTTCAGAGCACCTGAATTCAGTTCCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| 3UTR CCA 72 bp | AGGTGCCCACAGAGACCAGAAGAGGGCATCATCCCTTaGAGGGGGAATCAGATCATAGGGAACTTTGAGCCA | + |
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Preference number: 3 (lower is better) Translates to: RCPQRPEEGIIP*RGNQIIGNFEP Trigger: TGGCTCAAAGTTCCCTATGATCTGATTCCCCCTCCAAGGGATGATGCCCTCTTCTGGTCTCTGTGGGCACCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| 3UTR GCA 72 bp | ACCTGTGGACACATCAATGCAAGAGGAACAGAGGACTaGTGGGAACTGTTGAAGCGACTGAGTTTGAATTAT | + |
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Preference number: 3 (lower is better) Translates to: TCGHINARGTED*WELLKRLSLNY Trigger: ATAATTCAAACTCAGTCGCTTCAACAGTTCCCAGCAGTCCTCTGTTCCTCTTGCATTGATGTGTCCACAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR GCA 72 bp | AGGTTAGCCTCTAATTCGCAGAGATCCTTCTACCTCTaGCTCAGAATGCTGGAACAAGCTTTAAGTTTCTCA | + |
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Preference number: 3 (lower is better) Translates to: RLASNSQRSFYL*LRMLEQALSFS Trigger: TGAGAAACTTAAAGCTTGTTCCAGCATTCTGAGGCAGAGGTAGAAGGATCTCTGCGAATTAGAGGCTAACCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR CCA 72 bp | TGTGGACACATCAATGCAAGAGGAACAGAGGACTGCTaGGAACTGTTGAAGCGACTGAGTTTGAATTATGAA | + |
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Preference number: 3 (lower is better) Translates to: CGHINARGTEDC*ELLKRLSLNYE Trigger: TTCATAATTCAAACTCAGTCGCTTCAACAGTTCCCAGCAGTCCTCTGTTCCTCTTGCATTGATGTGTCCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR TCA 72 bp | CTGCTGGGAACTGTTGAAGCGACTGAGTTTGAATTATaGAAACTTTCCAAAACACGCTGTGATTGGGGAAAC | + |
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Preference number: 3 (lower is better) Translates to: LLGTVEATEFEL*KLSKTRCDWGN Trigger: GTTTCCCCAATCACAGCGTGTTTTGGAAAGTTTTCATAATTCAAACTCAGTCGCTTCAACAGTTCCCAGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR CCA 72 bp | ACTTTACATATATCTTGGTTAGGGTGTTACTGTTCGTaGCTTTTTACATCAAGAATCAGCCCTGATAAGAGA | + |
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Preference number: 3 (lower is better) Translates to: TLHISWLGCYCS*LFTSRISPDKR Trigger: TCTCTTATCAGGGCTGATTCTTGATGTAAAAAGCCACGAACAGTAACACCCTAACCAAGATATATGTAAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR TCA 72 bp | TGTGTTTACTCTAAGTTATCTTTATGCTTCTTAACCTaGTCATCTCAAGCCTATAATGTACAGATGCCAATC | + |
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Preference number: 3 (lower is better) Translates to: CVYSKLSLCFLT*SSQAYNVQMPI Trigger: GATTGGCATCTGTACATTATAGGCTTGAGATGATCAGGTTAAGAAGCATAAAGATAACTTAGAGTAAACACA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| CDS-3UTR TCA 90 bp | ACTGGCCCATCTCTGCAGCCCCTGCCTGACAAGACACAGGTACATATGTTGGAACTTTGTGGTAGAAAATaGCCACTTCTCTGTCATGGA | + |
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Preference number: 4 (lower is better) Translates to: TGPSLQPLPDKTQVHMLELCGRK*PLLCHG Trigger: TCCATGACAGAGAAGTGGTCATTTTCTACCACAAAG...TTCCAACATATGTACCTGTGTCTTGTCAGGCAGGGGCTGCAGAGATGGGCCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| CDS-3UTR CCA 90 bp | TGCAGGTGCCCACAGAGACCAGAAGAGGGCATCATCCCTTGGAGGGGGAATCAGAGAGTCACATTTAAATaGTTCCTTAGAAAGTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: CRCPQRPEEGIIPWRGNQRVTFK*FLRKCH Trigger: GTGACACTTTCTAAGGAACCATTTAAATGTGACTCT...CTGATTCCCCCTCCAAGGGATGATGCCCTCTTCTGGTCTCTGTGGGCACCTGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| CDS-3UTR TCA 90 bp | GAAGAGGGCATCATCCCTTGGAGGGGGAATCAGATCATAGGGAACTTTGAGCCACTTTGTGGTAGAAAATaGCCACTTCTCTGTCATGGA | + |
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Preference number: 4 (lower is better) Translates to: EEGIIPWRGNQIIGNFEPLCGRK*PLLCHG Trigger: TCCATGACAGAGAAGTGGTCATTTTCTACCACAAAG...TGGCTCAAAGTTCCCTATGATCTGATTCCCCCTCCAAGGGATGATGCCCTCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| 3UTR CAA 72 bp | TGCCAATCAGTCCTGAGAAATATGGAATGTATCCTGTaGACCTATAATGTACAGATGCCAATCAGTCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: CQSVLRNMECIL*TYNVQMPISPE Trigger: CTCAGGACTGATTGGCATCTGTACATTATAGGTCAACAGGATACATTCCATATTTCTCAGGACTGATTGGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| 3UTR CAA 72 bp | ACAGAGGACTGCTGGGAACTGTTGAAGCGACTGAGTTaGAATTATGAAAACTTTCCAAAACACGCTGTGATT | + |
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Preference number: 4 (lower is better) Translates to: TEDCWELLKRLS*NYENFPKHAVI Trigger: AATCACAGCGTGTTTTGGAAAGTTTTCATAATTCAAACTCAGTCGCTTCAACAGTTCCCAGCAGTCCTCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| CDS-3UTR CCA 90 bp | ATTGTAAATAGTGTAATTAAATACGGAAGTCAGCAACCTGTGGACACATCAATGAGAGTCACATTTAAATaGTTCCTTAGAAAGTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: IVNSVIKYGSQQPVDTSMRVTFK*FLRKCH Trigger: GTGACACTTTCTAAGGAACCATTTAAATGTGACTCT...CATTGATGTGTCCACAGGTTGCTGACTTCCGTATTTAATTACACTATTTACAAT 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| CDS-3UTR CAA 90 bp | TGTGTGTGCAGGTGCCCACAGAGACCAGAAGAGGGCATCATCCCTTGGAGGGGGATACATGATTGTCCATaGAAATCCTCAATTTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: CVCRCPQRPEEGIIPWRGIHDCP*KSSISP Trigger: GGGAGAAATTGAGGATTTCAATGGACAATCATGTAT...CCCCCTCCAAGGGATGATGCCCTCTTCTGGTCTCTGTGGGCACCTGCACACACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| CDS-3UTR CAA 90 bp | ACTGGCCCATCTCTGCAGCCCCTGCCTGACAAGACACAGGTACATATGTTGGAACTTCTTTTCCTCATCTaGTTCAGAGATTTCAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: TGPSLQPLPDKTQVHMLELLFLI*FRDFRV Trigger: GACCCTGAAATCTCTGAACAAGATGAGGAAAAGAAG...TTCCAACATATGTACCTGTGTCTTGTCAGGCAGGGGCTGCAGAGATGGGCCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050997.2 ENSMUST00000179078.9 |
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| CDS-3UTR CAA 90 bp | GAGATCCTTCTACCTCTGCCTCAGAATGCTGGAACAAGCTTTAAGTTTCTCATTCTTCTTTTCCTCATCTaGTTCAGAGATTTCAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: EILLPLPQNAGTSFKFLILLFLI*FRDFRV Trigger: GACCCTGAAATCTCTGAACAAGATGAGGAAAAGAAG...AATGAGAAACTTAAAGCTTGTTCCAGCATTCTGAGGCAGAGGTAGAAGGATCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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| CDS-3UTR CAA 90 bp | CCTATAATGTACAGATGCCAATCAGTCCTGAGAAATATGGAATGTATCCTGTTGATACATGATTGTCCATaGAAATCCTCAATTTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: PIMYRCQSVLRNMECILLIHDCP*KSSISP Trigger: GGGAGAAATTGAGGATTTCAATGGACAATCATGTAT...CAACAGGATACATTCCATATTTCTCAGGACTGATTGGCATCTGTACATTATAGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050997.2 |
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