Pregenerated sensors for RFC5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029363Ensembl transcript IDs: ENSMUST00000086461.13, ENSMUST00000111953.2
Found 119 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGGCCACTGCATTGTTCCTGAGACAGAGTCTGTCTCACTAGGCTaGCCTGCAGCTGCCTGGCAATTCTGCCTCAGCCTCCTGGGTCCT | + |
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Preference number: 1 (lower is better) Translates to: KGHCIVPETESVSLG*PAAAWQFCLSLLGP Trigger: AGGACCCAGGAGGCTGAGGCAGAATTGCCAGGCAGCTGCAGGTCAGCCTAGTGAGACAGACTCTGTCTCAGGAACAATGCAGTGGCCTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR GCA 90 bp | TCCATCCCTGCTCCAAACAGCCACAGAGAGCAGTACCTAAATGCCTaGAGAGAGACTTCTGTGACTGGGTTTATCCAGTGGCCCAGGGCA | + |
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Preference number: 1 (lower is better) Translates to: SIPAPNSHREQYLNA*RETSVTGFIQWPRA Trigger: TGCCCTGGGCCACTGGATAAACCCAGTCACAGAAGTCTCTCTGCAGGCATTTAGGTACTGCTCTCTGTGGCTGTTTGGAGCAGGGATGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR GCA 90 bp | CCTGTCCATCCCTGCTCCAAACAGCCACAGAGAGCAGTACCTAAATaGCTGCAGAGAGACTTCTGTGACTGGGTTTATCCAGTGGCCCAG | + |
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Preference number: 1 (lower is better) Translates to: PVHPCSKQPQRAVPK*LQRDFCDWVYPVAQ Trigger: CTGGGCCACTGGATAAACCCAGTCACAGAAGTCTCTCTGCAGGCATTTAGGTACTGCTCTCTGTGGCTGTTTGGAGCAGGGATGGACAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR TCA 90 bp | CTGACCTGCAGCTGCCTGGCAATTCTGCCTCAGCCTCCTGGGTCCTaGGGTTATAGGCATGTCAGCACTTTGGGCAAAAGACTGATTTTG | + |
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Preference number: 1 (lower is better) Translates to: LTCSCLAILPQPPGS*GYRHVSTLGKRLIL Trigger: CAAAATCAGTCTTTTGCCCAAAGTGCTGACATGCCTATAACCTCAGGACCCAGGAGGCTGAGGCAGAATTGCCAGGCAGCTGCAGGTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CCA 90 bp | CTTGTGCTGTCTGTCACATGTGTTTGTCTCTGCTGCTTGACCTCATaGGATGTACCCTCCAGTTCAACTGCCCAAAACAGACAGCCCCTT | + |
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Preference number: 1 (lower is better) Translates to: LVLSVTCVCLCCLTS*DVPSSSTAQNRQPL Trigger: AAGGGGCTGTCTGTTTTGGGCAGTTGAACTGGAGGGTACATCCCATGAGGTCAAGCAGCAGAGACAAACACATGTGACAGACAGCACAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR TCA 90 bp | TCTCCATGGACAAGAAAGTCAGTTTCTCCCTTTGACAGCACACACTaGAAGCACCTCCCTGAGATGCATTTTACCCATGGTGCACCGGGT | + |
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Preference number: 1 (lower is better) Translates to: SPWTRKSVSPFDSTH*KHLPEMHFTHGAPG Trigger: ACCCGGTGCACCATGGGTAAAATGCATCTCAGGGAGGTGCTTTCAGTGTGTGCTGTCAAAGGGAGAAACTGACTTTCTTGTCCATGGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR TCA 90 bp | ATCACTGGCTTGTGCTGTCTGTCACATGTGTTTGTCTCTGCTGCTTaGCCTCATGGGATGTACCCTCCAGTTCAACTGCCCAAAACAGAC | + |
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Preference number: 1 (lower is better) Translates to: ITGLCCLSHVFVSAA*PHGMYPPVQLPKTD Trigger: GTCTGTTTTGGGCAGTTGAACTGGAGGGTACATCCCATGAGGTCAAGCAGCAGAGACAAACACATGTGACAGACAGCACAAGCCAGTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CCA 90 bp | TTTAAAATGGAAAGCAGGACACTGGTGGCAACTCTTCCACATGGCTaGGATGCTGCCTTCACTCAGCTTGAAACTTGGGAGCAAGCTCTC | + |
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Preference number: 1 (lower is better) Translates to: FKMESRTLVATLPHG*DAAFTQLETWEQAL Trigger: GAGAGCTTGCTCCCAAGTTTCAAGCTGAGTGAAGGCAGCATCCCAGCCATGTGGAAGAGTTGCCACCAGTGTCCTGCTTTCCATTTTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CCA 90 bp | GGACAGGGTAGTTTCCCCTATAAAGACAAGCAGTGTCGATCATTATaGATTAAAGTTGCCCTGTCCATCCCTGCTCCAAACAGCCACAGA | + |
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Preference number: 1 (lower is better) Translates to: GQGSFPYKDKQCRSL*IKVALSIPAPNSHR Trigger: TCTGTGGCTGTTTGGAGCAGGGATGGACAGGGCAACTTTAATCCATAATGATCGACACTGCTTGTCTTTATAGGGGAAACTACCCTGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CCA 90 bp | ACAACTGTGTTTTCTCAATTGTCTCGAAGAACCAGAGTTCTTAAGTaGCCCAGTTGTGGAGCCAAGTCTAAGTCGTGTGGAGTCAGTGCT | + |
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Preference number: 1 (lower is better) Translates to: TTVFSQLSRRTRVLK*PSCGAKSKSCGVSA Trigger: AGCACTGACTCCACACGACTTAGACTTGGCTCCACAACTGGGCCACTTAAGAACTCTGGTTCTTCGAGACAATTGAGAAAACACAGTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR TCA 90 bp | AGTGTTAACATTGTACAGTGTATGCATAGAGGAGTCTCCTCTATTTaGAGAACAATGCAAAATGAGGCTTTCATTGAAGGGAGAAAAGAG | + |
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Preference number: 1 (lower is better) Translates to: SVNIVQCMHRGVSSI*RTMQNEAFIEGRKE Trigger: CTCTTTTCTCCCTTCAATGAAAGCCTCATTTTGCATTGTTCTTCAAATAGAGGAGACTCCTCTATGCATACACTGTACAATGTTAACACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR GCA 90 bp | ACCCATGGTGCACCGGGTGCCCTCCAGTGCCCCTCATCCGGCCCAAGGGAAGTCGCTGCCTGGCAATTCTaGCTCAGCCTCCTGGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: THGAPGALQCPSSGPREVAAWQF*LSLLGP Trigger: AGGACCCAGGAGGCTGAGGCAGAATTGCCAGGCAGC...GACTTCCCTTGGGCCGGATGAGGGGCACTGGAGGGCACCCGGTGCACCATGGGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR TCA 90 bp | TCCAGTGCCCCTCATCCGGCCCAAGGGAAGTCTGGTCCCAAGGTAACAACAGTCCAGCCTCCTGGGTCCTaGGGTTATAGGCATGTCAGC | + |
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Preference number: 2 (lower is better) Translates to: SSAPHPAQGKSGPKVTTVQPPGS*GYRHVS Trigger: GCTGACATGCCTATAACCTCAGGACCCAGGAGGCTG...GACTGTTGTTACCTTGGGACCAGACTTCCCTTGGGCCGGATGAGGGGCACTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR GCA 90 bp | TTGTCTCGAAGAACCAGAGTTCTTAAGTGGCCCAGTTGTGGAGCCAAGTCTAAGCCGGGTGCCCTCCAGTaGCCCTCATCCGGCCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: LSRRTRVLKWPSCGAKSKPGALQ*PSSGPR Trigger: CCTTGGGCCGGATGAGGGGCACTGGAGGGCACCCGG...CTTAGACTTGGCTCCACAACTGGGCCACTTAAGAACTCTGGTTCTTCGAGACAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR TCA 90 bp | AACTGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTTGACAGCGGTAGCATCTGTCTCACTAGGCTaGCCTGCAGCTGCCTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: NCPKQTAPSKHRSLTAVASVSLG*PAAAWQ Trigger: TTGCCAGGCAGCTGCAGGTCAGCCTAGTGAGACAGA...TGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR GCA 90 bp | AACTGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTTGACAGCGGTAGCATGCCCTGTCCATCCCTaGTCCAAACAGCCACAGAGA | + |
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Preference number: 2 (lower is better) Translates to: NCPKQTAPSKHRSLTAVACPVHP*SKQPQR Trigger: TCTCTGTGGCTGTTTGGAGCAGGGATGGACAGGGCA...TGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR CCA 90 bp | GGGCAGGGTACAACCTCTAAGTTGGCCCCGCAGAAAGTAGAGGCTGCCAGGTGTCACACAAGATCCCATTaGTCAAACACAGCCAGGACT | + |
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Preference number: 2 (lower is better) Translates to: GQGTTSKLAPQKVEAARCHTRSH*SNTART Trigger: AGTCCTGGCTGTGTTTGACCAATGGGATCTTGTGTG...ACACCTGGCAGCCTCTACTTTCTGCGGGGCCAACTTAGAGGTTGTACCCTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGCTGTCTGTCACATGTGTTTGTCTCTGCTGCTTGACCTCATGGGATGTACCGCCTGGTCTACAGAGTaGGTTCCAGGACAACCAGGG | + |
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Preference number: 2 (lower is better) Translates to: CAVCHMCLSLLLDLMGCTAWSTE*VPGQPG Trigger: CCCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGC...GGTACATCCCATGAGGTCAAGCAGCAGAGACAAACACATGTGACAGACAGCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR GCA 90 bp | TGTGCTGTCTGTCACATGTGTTTGTCTCTGCTGCTTGACCTCATGGGATGTACCAACACAGCCCAGCAGTaGGGCAGGAACGTCTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: CAVCHMCLSLLLDLMGCTNTAQQ*GRNVCS Trigger: ACTGCAGACGTTCCTGCCGCACTGCTGGGCTGTGTT...GGTACATCCCATGAGGTCAAGCAGCAGAGACAAACACATGTGACAGACAGCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR GCA 90 bp | CTAGAAGGAATAGTCTCTAAGGAGTTCCCTGTGACACAGTGTGACACAGACATGAGGCTGACCTGCAGCTaGCTGGCAATTCTGCCTCAG | + |
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Preference number: 2 (lower is better) Translates to: LEGIVSKEFPVTQCDTDMRLTCS*LAILPQ Trigger: CTGAGGCAGAATTGCCAGGCAGCTGCAGGTCAGCCT...CATGTCTGTGTCACACTGTGTCACAGGGAACTCCTTAGAGACTATTCCTTCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR TCA 90 bp | TGTCTCGAAGAACCAGAGTTCTTAAGTGGCCCAGTTGTGGAGCCAAGTCTAAGTCCCTGTGACACAGTGTaGCACAGACATGCAGGTAGA | + |
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Preference number: 2 (lower is better) Translates to: CLEEPEFLSGPVVEPSLSPCDTV*HRHAGR Trigger: TCTACCTGCATGTCTGTGTCACACTGTGTCACAGGG...ACTTAGACTTGGCTCCACAACTGGGCCACTTAAGAACTCTGGTTCTTCGAGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR TCA 90 bp | GTGCTGTCTGTCACATGTGTTTGTCTCTGCTGCTTGACCTCATGGGATGTACCCGTCAGTTTCTCCCTTTaGCAGCACACACTGAAAGCA | + |
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Preference number: 2 (lower is better) Translates to: VLSVTCVCLCCLTSWDVPVSFSL*QHTLKA Trigger: TGCTTTCAGTGTGTGCTGTCAAAGGGAGAAACTGAC...GGGTACATCCCATGAGGTCAAGCAGCAGAGACAAACACATGTGACAGACAGCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR GCA 90 bp | CTAGAAGGAATAGTCTCTAAGGAGTTCCCTGTGACACAGTGTGACACAGACATGCTCACTAGGCTGACCTaGAGCTGCCTGGCAATTCTG | + |
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Preference number: 2 (lower is better) Translates to: LEGIVSKEFPVTQCDTDMLTRLT*SCLAIL Trigger: CAGAATTGCCAGGCAGCTGCAGGTCAGCCTAGTGAG...CATGTCTGTGTCACACTGTGTCACAGGGAACTCCTTAGAGACTATTCCTTCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CAA 90 bp | ACTTGGGAGCAAGCTCTCCATGGACAAGAAAGTCAGTTTCTCCCTTaGACAGCACACACTGAAAGCACCTCCCTGAGATGCATTTTACCC | + |
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Preference number: 2 (lower is better) Translates to: TWEQALHGQESQFLP*TAHTESTSLRCILP Trigger: GGGTAAAATGCATCTCAGGGAGGTGCTTTCAGTGTGTGCTGTCAAAGGGAGAAACTGACTTTCTTGTCCATGGAGAGCTTGCTCCCAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CAA 90 bp | GTTTCCCCTATAAAGACAAGCAGTGTCGATCATTATGGATTAAAGTaGCCCTGTCCATCCCTGCTCCAAACAGCCACAGAGAGCAGTACC | + |
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Preference number: 2 (lower is better) Translates to: VSPIKTSSVDHYGLK*PCPSLLQTATESST Trigger: GGTACTGCTCTCTGTGGCTGTTTGGAGCAGGGATGGACAGGGCAACTTTAATCCATAATGATCGACACTGCTTGTCTTTATAGGGGAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR CCA 90 bp | CACTGGCTTGTGCTGTCTGTCACATGTGTTTGTCTCTGCTGCTTGACCTCATGGCAGTGTCGATCATTATaGATTAAAGTTGCCCTGTCC | + |
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Preference number: 2 (lower is better) Translates to: HWLVLSVTCVCLCCLTSWQCRSL*IKVALS Trigger: GGACAGGGCAACTTTAATCCATAATGATCGACACTG...CCATGAGGTCAAGCAGCAGAGACAAACACATGTGACAGACAGCACAAGCCAGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR TCA 90 bp | AACTGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTTGACAGCGGTAGCAAATTTGTCATCCCAGTaGCTGATAGTAAAGACTTTG | + |
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Preference number: 2 (lower is better) Translates to: NCPKQTAPSKHRSLTAVANLSSQ*LIVKTL Trigger: CAAAGTCTTTACTATCAGTCACTGGGATGACAAATT...TGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR GCA 90 bp | TTGTCTCGAAGAACCAGAGTTCTTAAGTGGCCCAGTTGTGGAGCCAAGTCTAAGAGAGCAGTACCTAAATaGCTGCAGAGAGACTTCTGT | + |
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Preference number: 2 (lower is better) Translates to: LSRRTRVLKWPSCGAKSKRAVPK*LQRDFC Trigger: ACAGAAGTCTCTCTGCAGGCATTTAGGTACTGCTCT...CTTAGACTTGGCTCCACAACTGGGCCACTTAAGAACTCTGGTTCTTCGAGACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CCA 72 bp | GCCTGCAGAGAGACTTCTGTGACTGGGTTTATCCAGTaGCCCAGGGCAGCATGTCCTCTGTCCTCCAGTCAC | + |
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Preference number: 3 (lower is better) Translates to: ACRETSVTGFIQ*PRAACPLSSSH Trigger: GTGACTGGAGGACAGAGGACATGCTGCCCTGGGCCACTGGATAAACCCAGTCACAGAAGTCTCTCTGCAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR TCA 72 bp | TGCATTGTTCCTGAGACAGAGTCTGTCTCACTAGGCTaGCCTGCAGCTGCCTGGCAATTCTGCCTCAGCCTC | + |
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Preference number: 3 (lower is better) Translates to: CIVPETESVSLG*PAAAWQFCLSL Trigger: GAGGCTGAGGCAGAATTGCCAGGCAGCTGCAGGTCAGCCTAGTGAGACAGACTCTGTCTCAGGAACAATGCA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR TCA 72 bp | AGCTGCCTGGCAATTCTGCCTCAGCCTCCTGGGTCCTaGGGTTATAGGCATGTCAGCACTTTGGGCAAAAGA | + |
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Preference number: 3 (lower is better) Translates to: SCLAILPQPPGS*GYRHVSTLGKR Trigger: TCTTTTGCCCAAAGTGCTGACATGCCTATAACCTCAGGACCCAGGAGGCTGAGGCAGAATTGCCAGGCAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CCA 72 bp | GCAGTACCTAAATGCCTGCAGAGAGACTTCTGTGACTaGGTTTATCCAGTGGCCCAGGGCAGCATGTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: AVPKCLQRDFCD*VYPVAQGSMSS Trigger: AGAGGACATGCTGCCCTGGGCCACTGGATAAACCCAGTCACAGAAGTCTCTCTGCAGGCATTTAGGTACTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CCA 72 bp | GAAAGCAGGACACTGGTGGCAACTCTTCCACATGGCTaGGATGCTGCCTTCACTCAGCTTGAAACTTGGGAG | + |
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Preference number: 3 (lower is better) Translates to: ESRTLVATLPHG*DAAFTQLETWE Trigger: CTCCCAAGTTTCAAGCTGAGTGAAGGCAGCATCCCAGCCATGTGGAAGAGTTGCCACCAGTGTCCTGCTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR CAA 90 bp | AACTGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTTGACAGCGGTAGCAGGAAAGGCCACTGCATaGTTCCTGAGACAGAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: NCPKQTAPSKHRSLTAVAGKATA*FLRQSL Trigger: CAGACTCTGTCTCAGGAACAATGCAGTGGCCTTTCC...TGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR GCA 72 bp | CCTGCTGGCAAGCCTTCTAAAAGTGGGAAAGGCCACTaGATTGTTCCTGAGACAGAGTCTGTCTCACTAGGC | + |
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Preference number: 3 (lower is better) Translates to: PAGKPSKSGKGH*IVPETESVSLG Trigger: GCCTAGTGAGACAGACTCTGTCTCAGGAACAATGCAGTGGCCTTTCCCACTTTTAGAAGGCTTGCCAGCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR CAA 90 bp | CATGGGATGTACCCTCCAGTTCAACTGCCCAAAACAGACAGCCCCTTCCAAGCAAGCACCCATTTAGAGTaGGAAGACAGGACGCAACTC | + |
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Preference number: 3 (lower is better) Translates to: HGMYPPVQLPKTDSPFQASTHLE*EDRTQL Trigger: GAGTTGCGTCCTGTCTTCCAACTCTAAATGGGTGCT...TGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTTGAACTGGAGGGTACATCCCATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR CAA 90 bp | AACTGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTTGACAGCGGTAGCACTTCCTGTGAAGGACTaGGTAAAAACACAGCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: NCPKQTAPSKHRSLTAVALPVKD*VKTQPS Trigger: GCTGGGCTGTGTTTTTACCAAGTCCTTCACAGGAAG...TGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR CAA 90 bp | CATGGGATGTACCCTCCAGTTCAACTGCCCAAAACAGACAGCCCCTTCCAAGCACATTATGGATTAAAGTaGCCCTGTCCATCCCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: HGMYPPVQLPKTDSPFQAHYGLK*PCPSLL Trigger: GAGCAGGGATGGACAGGGCAACTTTAATCCATAATG...TGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTTGAACTGGAGGGTACATCCCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR CAA 90 bp | CGAAGAACCAGAGTTCTTAAGTGGCCCAGTTGTGGAGCCAAGTCTAAGTCGTGTGCTGACATCACTGGCTaGTGCTGTCTGTCACATGTG | + |
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Preference number: 3 (lower is better) Translates to: RRTRVLKWPSCGAKSKSCADITG*CCLSHV Trigger: CACATGTGACAGACAGCACAAGCCAGTGATGTCAGC...ACACGACTTAGACTTGGCTCCACAACTGGGCCACTTAAGAACTCTGGTTCTTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR TCA 72 bp | TCTTCCACATGGCTGGGATGCTGCCTTCACTCAGCTTaGAACTTGGGAGCAAGCTCTCCATGGACAAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: SSTWLGCCLHSA*NLGASSPWTRK Trigger: CTTTCTTGTCCATGGAGAGCTTGCTCCCAAGTTTCAAGCTGAGTGAAGGCAGCATCCCAGCCATGTGGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR GCA 72 bp | GCTCCAAACAGCCACAGAGAGCAGTACCTAAATGCCTaGAGAGAGACTTCTGTGACTGGGTTTATCCAGTGG | + |
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Preference number: 3 (lower is better) Translates to: APNSHREQYLNA*RETSVTGFIQW Trigger: CCACTGGATAAACCCAGTCACAGAAGTCTCTCTGCAGGCATTTAGGTACTGCTCTCTGTGGCTGTTTGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR GCA 72 bp | CACTGGCTTGTGCTGTCTGTCACATGTGTTTGTCTCTaGTGCTTGACCTCATGGGATGTACCCTCCAGTTCA | + |
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Preference number: 3 (lower is better) Translates to: HWLVLSVTCVCL*CLTSWDVPSSS Trigger: TGAACTGGAGGGTACATCCCATGAGGTCAAGCAGCAGAGACAAACACATGTGACAGACAGCACAAGCCAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR CAA 90 bp | TTGTCTCGAAGAACCAGAGTTCTTAAGTGGCCCAGTTGTGGAGCCAAGTCTAAGGTTTGTCTCTGCTGCTaGACCTCATGGGATGTACCC | + |
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Preference number: 3 (lower is better) Translates to: LSRRTRVLKWPSCGAKSKVCLCC*TSWDVP Trigger: GGGTACATCCCATGAGGTCAAGCAGCAGAGACAAAC...CTTAGACTTGGCTCCACAACTGGGCCACTTAAGAACTCTGGTTCTTCGAGACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CCA 72 bp | CATGGCTGGGATGCTGCCTTCACTCAGCTTGAAACTTaGGAGCAAGCTCTCCATGGACAAGAAAGTCAGTTT | + |
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Preference number: 3 (lower is better) Translates to: HGWDAAFTQLET*EQALHGQESQF Trigger: AAACTGACTTTCTTGTCCATGGAGAGCTTGCTCCCAAGTTTCAAGCTGAGTGAAGGCAGCATCCCAGCCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR-3UTR CAA 90 bp | ACTCTTCCACATGGCTGGGATGCTGCCTTCACTCAGCTTGAAACTTGGGAGCAAAGGCATGTCAGCACTTaGGGCAAAAGACTGATTTTG | + |
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Preference number: 3 (lower is better) Translates to: TLPHGWDAAFTQLETWEQRHVST*GKRLIL Trigger: CAAAATCAGTCTTTTGCCCAAAGTGCTGACATGCCT...TTGCTCCCAAGTTTCAAGCTGAGTGAAGGCAGCATCCCAGCCATGTGGAAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR TCA 72 bp | ACAAGAAAGTCAGTTTCTCCCTTTGACAGCACACACTaGAAGCACCTCCCTGAGATGCATTTTACCCATGGT | + |
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Preference number: 3 (lower is better) Translates to: TRKSVSPFDSTH*KHLPEMHFTHG Trigger: ACCATGGGTAAAATGCATCTCAGGGAGGTGCTTTCAGTGTGTGCTGTCAAAGGGAGAAACTGACTTTCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR GCA 72 bp | ACCCATTTAGAGTTGGAAGACAGGACGCAACTCAGCTaGAGCCAATTTGTCATCCCAGTGACTGATAGTAAA | + |
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Preference number: 3 (lower is better) Translates to: THLELEDRTQLS*SQFVIPVTDSK Trigger: TTTACTATCAGTCACTGGGATGACAAATTGGCTGCAGCTGAGTTGCGTCCTGTCTTCCAACTCTAAATGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| 3UTR CCA 72 bp | TTTTCTCAATTGTCTCGAAGAACCAGAGTTCTTAAGTaGCCCAGTTGTGGAGCCAAGTCTAAGTCGTGTGGA | + |
|
Preference number: 3 (lower is better) Translates to: FSQLSRRTRVLK*PSCGAKSKSCG Trigger: TCCACACGACTTAGACTTGGCTCCACAACTGGGCCACTTAAGAACTCTGGTTCTTCGAGACAATTGAGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| 3UTR CCA 72 bp | AGTTTCCCCTATAAAGACAAGCAGTGTCGATCATTATaGATTAAAGTTGCCCTGTCCATCCCTGCTCCAAAC | + |
|
Preference number: 3 (lower is better) Translates to: SFPYKDKQCRSL*IKVALSIPAPN Trigger: GTTTGGAGCAGGGATGGACAGGGCAACTTTAATCCATAATGATCGACACTGCTTGTCTTTATAGGGGAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| 3UTR-3UTR CAA 90 bp | ACTAAAGAGATATGCAGTATTCATTATCACCACGAAATCTTAAGGGGTTCAACAACACACAAGATCCCATaGGTCAAACACAGCCAGGAC | + |
|
Preference number: 3 (lower is better) Translates to: TKEICSIHYHHEILRGSTTHKIP*VKHSQD Trigger: GTCCTGGCTGTGTTTGACCAATGGGATCTTGTGTGT...TGTTGAACCCCTTAAGATTTCGTGGTGATAATGAATACTGCATATCTCTTTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
||
| 3UTR GCA 72 bp | TGCTTTATGGAGGCAGTGTTAACATTGTACAGTGTATaGATAGAGGAGTCTCCTCTATTTGAAGAACAATGC | + |
|
Preference number: 3 (lower is better) Translates to: CFMEAVLTLYSV*IEESPLFEEQC Trigger: GCATTGTTCTTCAAATAGAGGAGACTCCTCTATGCATACACTGTACAATGTTAACACTGCCTCCATAAAGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| 3UTR TCA 72 bp | ATTGTACAGTGTATGCATAGAGGAGTCTCCTCTATTTaGAGAACAATGCAAAATGAGGCTTTCATTGAAGGG | + |
|
Preference number: 3 (lower is better) Translates to: IVQCMHRGVSSI*RTMQNEAFIEG Trigger: CCCTTCAATGAAAGCCTCATTTTGCATTGTTCTTCAAATAGAGGAGACTCCTCTATGCATACACTGTACAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | CATTTTACCCATGGTGCACCGGGTGCCCTCCAGTGCCCCTCATCCGGCCCAAGGGCGTTCTGGGCATCCTaGGTCATGGCGTCGGCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: HFTHGAPGALQCPSSGPRAFWAS*VMASAS Trigger: CGAAGCCGACGCCATGACTCAGGATGCCCAGAACGC...CCTTGGGCCGGATGAGGGGCACTGGAGGGCACCCGGTGCACCATGGGTAAAATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | ACCCATGGTGCACCGGGTGCCCTCCAGTGCCCCTCATCCGGCCCAAGGGAAGTCTGTCCTGGTGAGAAATaGGATCGGCCAGGGTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: THGAPGALQCPSSGPREVCPGEK*DRPGSV Trigger: CACAGACCCTGGCCGATCTCATTTCTCACCAGGACA...GACTTCCCTTGGGCCGGATGAGGGGCACTGGAGGGCACCCGGTGCACCATGGGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR GCA 90 bp | ACCCATGGTGCACCGGGTGCCCTCCAGTGCCCCTCATCCGGCCCAAGGGAAGTCTCTGTCAGGATGTCATaGAGCGCCAAGCCCTTCAGA | + |
|
Preference number: 4 (lower is better) Translates to: THGAPGALQCPSSGPREVSVRMS*SAKPFR Trigger: TCTGAAGGGCTTGGCGCTGCATGACATCCTGACAGA...GACTTCCCTTGGGCCGGATGAGGGGCACTGGAGGGCACCCGGTGCACCATGGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CCA 90 bp | GACTGGGTTTATCCAGTGGCCCAGGGCAGCATGTCCTCTGTCCTCCAGTCACCCCACAGGCCAGGATGGTaGATGTCTTTCCTGTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: DWVYPVAQGSMSSVLQSPHRPGW*MSFLSL Trigger: CAGGGACAGGAAAGACATCCACCATCCTGGCCTGTG...GGGTGACTGGAGGACAGAGGACATGCTGCCCTGGGCCACTGGATAAACCCAGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CCA 90 bp | GGGCAGGGTACAACCTCTAAGTTGGCCCCGCAGAAAGTAGAGGCTGCCAGGTGTCACAGGCCAGGATGGTaGATGTCTTTCCTGTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: GQGTTSKLAPQKVEAARCHRPGW*MSFLSL Trigger: CAGGGACAGGAAAGACATCCACCATCCTGGCCTGTG...ACACCTGGCAGCCTCTACTTTCTGCGGGGCCAACTTAGAGGTTGTACCCTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
||
| CDS-3UTR GCA 90 bp | GCATTTTACCCATGGTGCACCGGGTGCCCTCCAGTGCCCCTCATCCGGCCCAAGTTATCTTTGTACAGTTaGTTGGCACAGGCCAGGATG | + |
|
Preference number: 4 (lower is better) Translates to: AFYPWCTGCPPVPLIRPKLSLYS*LAQARM Trigger: CATCCTGGCCTGTGCCAAGCAACTGTACAAAGATAA...CTTGGGCCGGATGAGGGGCACTGGAGGGCACCCGGTGCACCATGGGTAAAATGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CCA 90 bp | AACTGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTTGACAGCGGTAGCAGGGCATCCTGAGTCATaGCGTCGGCTTCGTCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NCPKQTAPSKHRSLTAVAGHPES*RRLRPG Trigger: TCCTGGACGAAGCCGACGCCATGACTCAGGATGCCC...TGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CCA 90 bp | GGGCAGGGTACAACCTCTAAGTTGGCCCCGCAGAAAGTAGAGGCTGCCAGGTGTAGGTCTGAGCTGTTGTaGAGTGAGAGTGTCTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: GQGTTSKLAPQKVEAARCRSELL*SESVSF Trigger: GAAGGAGACACTCTCACTCCACAACAGCTCAGACCT...ACACCTGGCAGCCTCTACTTTCTGCGGGGCCAACTTAGAGGTTGTACCCTGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
||
| 3UTR CAA 72 bp | TGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTaGACAGCGGTAGCAGCTACCTATTCAAGACGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: CPKQTAPSKHRS*TAVAATYSRRL Trigger: GAGGCGTCTTGAATAGGTAGCTGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | ACTCTTCCACATGGCTGGGATGCTGCCTTCACTCAGCTTGAAACTTGGGAGCAACCCCACTGGACAGAGTaGCAAGGGCCTTCATTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: TLPHGWDAAFTQLETWEQPHWTE*QGPSFH Trigger: ATGGAATGAAGGCCCTTGTCACTCTGTCCAGTGGGG...TTGCTCCCAAGTTTCAAGCTGAGTGAAGGCAGCATCCCAGCCATGTGGAAGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | AACTGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTTGACAGCGGTAGCAGCAGTGGTGAAGTCCTaGTTGAGCATCCAGTCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: NCPKQTAPSKHRSLTAVAAVVKS*LSIQSS Trigger: ACTGGACTGGATGCTCAATCAGGACTTCACCACTGC...TGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR GCA 90 bp | GGGCAGGGTACAACCTCTAAGTTGGCCCCGCAGAAAGTAGAGGCTGCCAGGTGTTTATCTTTGTACAGTTaGTTGGCACAGGCCAGGATG | + |
|
Preference number: 4 (lower is better) Translates to: GQGTTSKLAPQKVEAARCLSLYS*LAQARM Trigger: CATCCTGGCCTGTGCCAAGCAACTGTACAAAGATAA...ACACCTGGCAGCCTCTACTTTCTGCGGGGCCAACTTAGAGGTTGTACCCTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
||
| CDS-3UTR CCA 90 bp | AACTGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTTGACAGCGGTAGCAAATGTCCGTCTTGAGTaGGTGTCCGGTGCAGGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: NCPKQTAPSKHRSLTAVANVRLE*VSGAGV Trigger: TACACCTGCACCGGACACCCACTCAAGACGGACATT...TGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | ACTCTTCCACATGGCTGGGATGCTGCCTTCACTCAGCTTGAAACTTGGGAGCAACTTGAAAAGCGGCGATaGGGGAGCTCAGCTGTATCT | + |
|
Preference number: 4 (lower is better) Translates to: TLPHGWDAAFTQLETWEQLEKRR*GSSAVS Trigger: AGATACAGCTGAGCTCCCTCATCGCCGCTTTTCAAG...TTGCTCCCAAGTTTCAAGCTGAGTGAAGGCAGCATCCCAGCCATGTGGAAGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR GCA 90 bp | TGTGCTGTCTGTCACATGTGTTTGTCTCTGCTGCTTGACCTCATGGGATGTACCCTCGTGCACCGAGACTaGAAGGCAGGGATGATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: CAVCHMCLSLLLDLMGCTLVHRD*KAGMIL Trigger: CAAGATCATCCCTGCCTTGCAGTCTCGGTGCACGAG...GGTACATCCCATGAGGTCAAGCAGCAGAGACAAACACATGTGACAGACAGCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | TGTCTCGAAGAACCAGAGTTCTTAAGTGGCCCAGTTGTGGAGCCAAGTCTAAGTAGGTCTCTGGTGACTTaGAAAGCGGCGATGAGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: CLEEPEFLSGPVVEPSLSRSLVT*KAAMRE Trigger: CTCCCTCATCGCCGCTTTTCAAGTCACCAGAGACCT...ACTTAGACTTGGCTCCACAACTGGGCCACTTAAGAACTCTGGTTCTTCGAGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR GCA 90 bp | CTCCATGGACAAGAAAGTCAGTTTCTCCCTTTGACAGCACACACTGAAAGCACCCAAATCGGAACCTCGTaGACCGAGACTGCAAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LHGQESQFLPLTAHTESTQIGTS*TETARQ Trigger: CTGCCTTGCAGTCTCGGTGCACGAGGTTCCGATTTG...GGTGCTTTCAGTGTGTGCTGTCAAAGGGAGAAACTGACTTTCTTGTCCATGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| 3UTR CAA 72 bp | CTCTTCCACATGGCTGGGATGCTGCCTTCACTCAGCTaGAAACTTGGGAGCAAGCTCTCCATGGACAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: LFHMAGMLPSLS*KLGSKLSMDKK Trigger: TTTCTTGTCCATGGAGAGCTTGCTCCCAAGTTTCAAGCTGAGTGAAGGCAGCATCCCAGCCATGTGGAAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| 3UTR CAA 72 bp | CTTGTGCTGTCTGTCACATGTGTTTGTCTCTGCTGCTaGACCTCATGGGATGTACCCTCCAGTTCAACTGCC | + |
|
Preference number: 4 (lower is better) Translates to: LVLSVTCVCLCC*TSWDVPSSSTA Trigger: GGCAGTTGAACTGGAGGGTACATCCCATGAGGTCAAGCAGCAGAGACAAACACATGTGACAGACAGCACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | AACTGCCCAAAACAGACAGCCCCTTCCAAGCACCGTTCTTTGACAGCGGTAGCAACCTGGTGTTTTCTGTaGACTTCTCAATCACTCGTC | + |
|
Preference number: 4 (lower is better) Translates to: NCPKQTAPSKHRSLTAVATWCFL*TSQSLV Trigger: GACGAGTGATTGAGAAGTTCACAGAAAACACCAGGT...TGCTACCGCTGTCAAAGAACGGTGCTTGGAAGGGGCTGTCTGTTTTGGGCAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| 3UTR CAA 72 bp | ACTCTGAACACACGCTTTATTCTTCCTGTGAAGGACTaGGTAAAAACACAGCCCAGCAGTGCGGCAGGAACG | + |
|
Preference number: 4 (lower is better) Translates to: TLNTRFILPVKD*VKTQPSSAAGT Trigger: CGTTCCTGCCGCACTGCTGGGCTGTGTTTTTACCAAGTCCTTCACAGGAAGAATAAAGCGTGTGTTCAGAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| 3UTR CAA 72 bp | CAAGCTCTCCATGGACAAGAAAGTCAGTTTCTCCCTTaGACAGCACACACTGAAAGCACCTCCCTGAGATGC | + |
|
Preference number: 4 (lower is better) Translates to: QALHGQESQFLP*TAHTESTSLRC Trigger: GCATCTCAGGGAGGTGCTTTCAGTGTGTGCTGTCAAAGGGAGAAACTGACTTTCTTGTCCATGGAGAGCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | CTCCATGGACAAGAAAGTCAGTTTCTCCCTTTGACAGCACACACTGAAAGCACCACTGCAAGGCAGGGATaGTCTTGGACAGGTAGTTAC | + |
|
Preference number: 4 (lower is better) Translates to: LHGQESQFLPLTAHTESTTARQG*SWTGSY Trigger: GTAACTACCTGTCCAAGATCATCCCTGCCTTGCAGT...GGTGCTTTCAGTGTGTGCTGTCAAAGGGAGAAACTGACTTTCTTGTCCATGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | CTAGAAGGAATAGTCTCTAAGGAGTTCCCTGTGACACAGTGTGACACAGACATGCTGTGTACAAACAAGTaGACCTCTGTCAGGATGTCA | + |
|
Preference number: 4 (lower is better) Translates to: LEGIVSKEFPVTQCDTDMLCTNK*TSVRMS Trigger: TGACATCCTGACAGAGGTTCACTTGTTTGTACACAG...CATGTCTGTGTCACACTGTGTCACAGGGAACTCCTTAGAGACTATTCCTTCTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CCA 90 bp | CTCCATGGACAAGAAAGTCAGTTTCTCCCTTTGACAGCACACACTGAAAGCACCTCCCAAAGGCCATATTaGTACTCTGAAGGATGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: LHGQESQFLPLTAHTESTSQRPY*YSEGCS Trigger: TGAACATCCTTCAGAGTACCAATATGGCCTTTGGGA...GGTGCTTTCAGTGTGTGCTGTCAAAGGGAGAAACTGACTTTCTTGTCCATGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR TCA 90 bp | AAAGAGATATGCAGTATTCATTATCACCACGAAATCTTAAGGGGTTCAACAAGATGTCCTGGTGAGAAATaGGATCGGCCAGGGTCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: KEICSIHYHHEILRGSTRCPGEK*DRPGSV Trigger: CACAGACCCTGGCCGATCTCATTTCTCACCAGGACA...TCTTGTTGAACCCCTTAAGATTTCGTGGTGATAATGAATACTGCATATCTCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
||
| CDS-3UTR CCA 90 bp | ACAAGCAGTGTCGATCATTATGGATTAAAGTTGCCCTGTCCATCCCTGCTCCAATCAGCTCCAAGACCATaGAGCCAAATTCTTTATCTT | + |
|
Preference number: 4 (lower is better) Translates to: TSSVDHYGLKLPCPSLLQSAPRP*SQILYL Trigger: AAGATAAAGAATTTGGCTCCATGGTCTTGGAGCTGA...TTGGAGCAGGGATGGACAGGGCAACTTTAATCCATAATGATCGACACTGCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CCA 90 bp | CTAGAAGGAATAGTCTCTAAGGAGTTCCCTGTGACACAGTGTGACACAGACATGCGATGTCTGCCATTTTaGTCAATAAGTGTATCCGAA | + |
|
Preference number: 4 (lower is better) Translates to: LEGIVSKEFPVTQCDTDMRCLPF*SISVSE Trigger: TTCGGATACACTTATTGACCAAAATGGCAGACATCG...CATGTCTGTGTCACACTGTGTCACAGGGAACTCCTTAGAGACTATTCCTTCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CCA 90 bp | ACTAAAGAGATATGCAGTATTCATTATCACCACGAAATCTTAAGGGGTTCAACATCACCTCCAAGACCATaGAGCCAAATTCTTTATCTT | + |
|
Preference number: 4 (lower is better) Translates to: TKEICSIHYHHEILRGSTSPPRP*SQILYL Trigger: AAGATAAAGAATTTGGCTCCATGGTCTTGGAGGTGA...TGTTGAACCCCTTAAGATTTCGTGGTGATAATGAATACTGCATATCTCTTTAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
||
| CDS CCA 90 bp | GGTACTCAGAATGTCCTGGTGAGAAATGAGATCGGCCAGGGTCTGTaGCCGGTACTTCTCAACCCAGGGCAGGTTCCGGGCCCGGGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: GTQNVLVRNEIGQGL*PVLLNPGQVPGPGR Trigger: GCGGCCCGGGCCCGGAACCTGCCCTGGGTTGAGAAGTACCGGCCACAGACCCTGGCCGATCTCATTTCTCACCAGGACATTCTGAGTACC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086461.13 ENSMUST00000111953.2 |
||
| CDS-3UTR CAA 90 bp | TCCAGTGCCCCTCATCCGGCCCAAGGGAAGTCTGGTCCCAAGGTAACAACAGTCTTGGCAATGTCCGTCTaGAGTGGGTGTCCGGTGCAG | + |
|
Preference number: 5 (lower is better) Translates to: SSAPHPAQGKSGPKVTTVLAMSV*SGCPVQ Trigger: CTGCACCGGACACCCACTCAAGACGGACATTGCCAA...GACTGTTGTTACCTTGGGACCAGACTTCCCTTGGGCCGGATGAGGGGCACTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CAA 90 bp | ACCCATGGTGCACCGGGTGCCCTCCAGTGCCCCTCATCCGGCCCAAGGGAAGTCATCCAGTCCAGTATATaGGCAATGTCCGTCTTGAGT | + |
|
Preference number: 5 (lower is better) Translates to: THGAPGALQCPSSGPREVIQSSI*AMSVLS Trigger: ACTCAAGACGGACATTGCCAATATACTGGACTGGAT...GACTTCCCTTGGGCCGGATGAGGGGCACTGGAGGGCACCCGGTGCACCATGGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CAA 90 bp | ACCCATGGTGCACCGGGTGCCCTCCAGTGCCCCTCATCCGGCCCAAGGGAAGTCCCAAATTCTTTATCTTaGTACAGTTGCTTGGCACAG | + |
|
Preference number: 5 (lower is better) Translates to: THGAPGALQCPSSGPREVPNSLS*YSCLAQ Trigger: CTGTGCCAAGCAACTGTACAAAGATAAAGAATTTGG...GACTTCCCTTGGGCCGGATGAGGGGCACTGGAGGGCACCCGGTGCACCATGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CAA 90 bp | TTATCCAGTGGCCCAGGGCAGCATGTCCTCTGTCCTCCAGTCACCCAGGGGCCAATCCACATTCTCTTCTaGTACTACATGTTCCAGTCG | + |
|
Preference number: 5 (lower is better) Translates to: LSSGPGQHVLCPPVTQGPIHILF*YYMFQS Trigger: CGACTGGAACATGTAGTACAAGAAGAGAATGTGGAT...TGGCCCCTGGGTGACTGGAGGACAGAGGACATGCTGCCCTGGGCCACTGGATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS TCA 90 bp | TATCCACATTCTCTTCTTGTACTACATGTTCCAGTCGAGGGACCATaGGCTCGGGTGTCAGAGGGCCAAATCGGAACCTCGTGCACCGAG | + |
|
Preference number: 5 (lower is better) Translates to: YPHSLLVLHVPVEGP*ARVSEGQIGTSCTE Trigger: CTCGGTGCACGAGGTTCCGATTTGGCCCTCTGACACCCGAGCTCATGGTCCCTCGACTGGAACATGTAGTACAAGAAGAGAATGTGGATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS CCA 90 bp | CTGATTGAGCATCCAGTCCAGTATATTGGCAATGTCCGTCTTGAGTaGGTGTCCGGTGCAGGTGTAGACAGTCTCCTCTGTCACCTTCCC | + |
|
Preference number: 5 (lower is better) Translates to: LIEHPVQYIGNVRLE*VSGAGVDSLLCHLP Trigger: GGGAAGGTGACAGAGGAGACTGTCTACACCTGCACCGGACACCCACTCAAGACGGACATTGCCAATATACTGGACTGGATGCTCAATCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS TCA 90 bp | TCTGTGAACTTCTCAATCACTCGTCTCAAGGCGTTCTGGGCATCCTaGGTCATGGCGTCGGCTTCGTCCAGGATCACAAGCTTAAACCCT | + |
|
Preference number: 5 (lower is better) Translates to: SVNFSITRLKAFWAS*VMASASSRITSLNP Trigger: AGGGTTTAAGCTTGTGATCCTGGACGAAGCCGACGCCATGACTCAGGATGCCCAGAACGCCTTGAGACGAGTGATTGAGAAGTTCACAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS CCA 90 bp | TGCAGGTGTAGACAGTCTCCTCTGTCACCTTCCCAAAGGCCATATTaGTACTCTGAAGGATGTTCAAAGCCCTTCGCATGTCCCCACTGG | + |
|
Preference number: 5 (lower is better) Translates to: CRCRQSPLSPSQRPY*YSEGCSKPFACPHW Trigger: CCAGTGGGGACATGCGAAGGGCTTTGAACATCCTTCAGAGTACCAATATGGCCTTTGGGAAGGTGACAGAGGAGACTGTCTACACCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS CCA 90 bp | AGCCAAATTCTTTATCTTTGTACAGTTGCTTGGCACAGGCCAGGATaGTGGATGTCTTTCCTGTCCCTGGAGGGCCATAGAGAAGTAGGT | + |
|
Preference number: 5 (lower is better) Translates to: SQILYLCTVAWHRPG*WMSFLSLEGHREVG Trigger: ACCTACTTCTCTATGGCCCTCCAGGGACAGGAAAGACATCCACCATCCTGGCCTGTGCCAAGCAACTGTACAAAGATAAAGAATTTGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086461.13 ENSMUST00000111953.2 |
||
| CDS CCA 90 bp | CTGAGCTGTTGTGGAGTGAGAGTGTCTCCTTCACCTCCAAGACCATaGAGCCAAATTCTTTATCTTTGTACAGTTGCTTGGCACAGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: LSCCGVRVSPSPPRP*SQILYLCTVAWHRP Trigger: TGGCCTGTGCCAAGCAACTGTACAAAGATAAAGAATTTGGCTCCATGGTCTTGGAGGTGAAGGAGACACTCTCACTCCACAACAGCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
||
| CDS-3UTR CAA 90 bp | CTAGAAGGAATAGTCTCTAAGGAGTTCCCTGTGACACAGTGTGACACAGACATGTCTTTGTACAGTTGCTaGGCACAGGCCAGGATGGTG | + |
|
Preference number: 5 (lower is better) Translates to: LEGIVSKEFPVTQCDTDMSLYSC*AQARMV Trigger: CACCATCCTGGCCTGTGCCAAGCAACTGTACAAAGA...CATGTCTGTGTCACACTGTGTCACAGGGAACTCCTTAGAGACTATTCCTTCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS CCA 90 bp | CAATATCGATCCCTCGGTCGTCAGAAGCATTCAGCTCCAAGACCATaGAGCCAAATTCTTTATCTTTGTACAGTTGCTTGGCACAGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: QYRSLGRQKHSAPRP*SQILYLCTVAWHRP Trigger: TGGCCTGTGCCAAGCAACTGTACAAAGATAAAGAATTTGGCTCCATGGTCTTGGAGCTGAATGCTTCTGACGACCGAGGGATCGATATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
||
| CDS-3UTR CAA 90 bp | ACTCTTCCACATGGCTGGGATGCTGCCTTCACTCAGCTTGAAACTTGGGAGCAAAGCTTAAACCCTTTCTaGAAGATTGTCCTTGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: TLPHGWDAAFTQLETWEQSLNPF*KIVLVL Trigger: CAGCACAAGGACAATCTTCAAGAAAGGGTTTAAGCT...TTGCTCCCAAGTTTCAAGCTGAGTGAAGGCAGCATCCCAGCCATGTGGAAGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS-3UTR CAA 90 bp | CCTATAAAGACAAGCAGTGTCGATCATTATGGATTAAAGTTGCCCTGTCCATCCCAGGTCTCTGGTGACTaGAAAAGCGGCGATGAGGGA | + |
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Preference number: 5 (lower is better) Translates to: PIKTSSVDHYGLKLPCPSQVSGD*KSGDEG Trigger: TCCCTCATCGCCGCTTTTCAAGTCACCAGAGACCTG...GGATGGACAGGGCAACTTTAATCCATAATGATCGACACTGCTTGTCTTTATAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS TCA 90 bp | TCTGAAGGATGTTCAAAGCCCTTCGCATGTCCCCACTGGACAGAGTaGCAAGGGCCTTCATTCCATCTTCACTTATATCCACATTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: SEGCSKPFACPHWTE*QGPSFHLHLYPHSL Trigger: AAGAGAATGTGGATATAAGTGAAGATGGAATGAAGGCCCTTGTCACTCTGTCCAGTGGGGACATGCGAAGGGCTTTGAACATCCTTCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS CCA 90 bp | ATAAAAGAAGGACAAAGGTTAAGTGTCTGGAGGTCTGAGCTGTTGTaGAGTGAGAGTGTCTCCTTCACCTCCAAGACCATGGAGCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: IKEGQRLSVWRSELL*SESVSFTSKTMEPN Trigger: ATTTGGCTCCATGGTCTTGGAGGTGAAGGAGACACTCTCACTCCACAACAGCTCAGACCTCCAGACACTTAACCTTTGTCCTTCTTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
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| CDS-3UTR CAA 90 bp | CAAGAAAGTCAGTTTCTCCCTTTGACAGCACACACTGAAAGCACCTCCCTGAGATCGATGTCTGCCATTTaGGTCAATAAGTGTATCCGA | + |
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Preference number: 5 (lower is better) Translates to: QESQFLPLTAHTESTSLRSMSAI*VNKCIR Trigger: TCGGATACACTTATTGACCAAAATGGCAGACATCGA...TCTCAGGGAGGTGCTTTCAGTGTGTGCTGTCAAAGGGAGAAACTGACTTTCTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS-3UTR CAA 90 bp | AAAGAGATATGCAGTATTCATTATCACCACGAAATCTTAAGGGGTTCAACAAGATCTTTGTACAGTTGCTaGGCACAGGCCAGGATGGTG | + |
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Preference number: 5 (lower is better) Translates to: KEICSIHYHHEILRGSTRSLYSC*AQARMV Trigger: CACCATCCTGGCCTGTGCCAAGCAACTGTACAAAGA...TCTTGTTGAACCCCTTAAGATTTCGTGGTGATAATGAATACTGCATATCTCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
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| CDS-3UTR CAA 90 bp | AAAGAGATATGCAGTATTCATTATCACCACGAAATCTTAAGGGGTTCAACAAGACCAAATTCTTTATCTTaGTACAGTTGCTTGGCACAG | + |
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Preference number: 5 (lower is better) Translates to: KEICSIHYHHEILRGSTRPNSLS*YSCLAQ Trigger: CTGTGCCAAGCAACTGTACAAAGATAAAGAATTTGG...TCTTGTTGAACCCCTTAAGATTTCGTGGTGATAATGAATACTGCATATCTCTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
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| CDS CCA 72 bp | AATGTCCTGGTGAGAAATGAGATCGGCCAGGGTCTGTaGCCGGTACTTCTCAACCCAGGGCAGGTTCCGGGC | + |
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Preference number: 6 (lower is better) Translates to: NVLVRNEIGQGL*PVLLNPGQVPG Trigger: GCCCGGAACCTGCCCTGGGTTGAGAAGTACCGGCCACAGACCCTGGCCGATCTCATTTCTCACCAGGACATT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086461.13 ENSMUST00000111953.2 |
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| CDS TCA 72 bp | TTCTCAATCACTCGTCTCAAGGCGTTCTGGGCATCCTaGGTCATGGCGTCGGCTTCGTCCAGGATCACAAGC | + |
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Preference number: 6 (lower is better) Translates to: FSITRLKAFWAS*VMASASSRITS Trigger: GCTTGTGATCCTGGACGAAGCCGACGCCATGACTCAGGATGCCCAGAACGCCTTGAGACGAGTGATTGAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS TCA 72 bp | TCTCTTCTTGTACTACATGTTCCAGTCGAGGGACCATaGGCTCGGGTGTCAGAGGGCCAAATCGGAACCTCG | + |
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Preference number: 6 (lower is better) Translates to: SLLVLHVPVEGP*ARVSEGQIGTS Trigger: CGAGGTTCCGATTTGGCCCTCTGACACCCGAGCTCATGGTCCCTCGACTGGAACATGTAGTACAAGAAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS CCA 72 bp | CTTGAAGATTGTCCTTGTGCTGGCAAAGCTGAGGATTaGCCCCCGAACAATATCGATCCCTCGGTCGTCAGA | + |
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Preference number: 6 (lower is better) Translates to: LEDCPCAGKAED*PPNNIDPSVVR Trigger: TCTGACGACCGAGGGATCGATATTGTTCGGGGGCCAATCCTCAGCTTTGCCAGCACAAGGACAATCTTCAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS CCA 72 bp | CATCCAGTCCAGTATATTGGCAATGTCCGTCTTGAGTaGGTGTCCGGTGCAGGTGTAGACAGTCTCCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: HPVQYIGNVRLE*VSGAGVDSLLC Trigger: ACAGAGGAGACTGTCTACACCTGCACCGGACACCCACTCAAGACGGACATTGCCAATATACTGGACTGGATG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS TCA 72 bp | TCCTCTGTCACCTTCCCAAAGGCCATATTGGTACTCTaGAGGATGTTCAAAGCCCTTCGCATGTCCCCACTG | + |
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Preference number: 6 (lower is better) Translates to: SSVTFPKAILVL*RMFKALRMSPL Trigger: CAGTGGGGACATGCGAAGGGCTTTGAACATCCTTCAGAGTACCAATATGGCCTTTGGGAAGGTGACAGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS CCA 72 bp | CTTTATCTTTGTACAGTTGCTTGGCACAGGCCAGGATaGTGGATGTCTTTCCTGTCCCTGGAGGGCCATAGA | + |
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Preference number: 6 (lower is better) Translates to: LYLCTVAWHRPG*WMSFLSLEGHR Trigger: TCTATGGCCCTCCAGGGACAGGAAAGACATCCACCATCCTGGCCTGTGCCAAGCAACTGTACAAAGATAAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086461.13 ENSMUST00000111953.2 |
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| CDS CCA 72 bp | GGACAAAGGTTAAGTGTCTGGAGGTCTGAGCTGTTGTaGAGTGAGAGTGTCTCCTTCACCTCCAAGACCATG | + |
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Preference number: 6 (lower is better) Translates to: GQRLSVWRSELL*SESVSFTSKTM Trigger: CATGGTCTTGGAGGTGAAGGAGACACTCTCACTCCACAACAGCTCAGACCTCCAGACACTTAACCTTTGTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
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| CDS CAA 72 bp | GAAGGACAAAGGTTAAGTGTCTGGAGGTCTGAGCTGTaGTGGAGTGAGAGTGTCTCCTTCACCTCCAAGACC | + |
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Preference number: 6 (lower is better) Translates to: EGQRLSVWRSEL*WSESVSFTSKT Trigger: GGTCTTGGAGGTGAAGGAGACACTCTCACTCCACAACAGCTCAGACCTCCAGACACTTAACCTTTGTCCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
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| CDS TCA 72 bp | ACTTCTGAATGGTACTCAGAATGTCCTGGTGAGAAATaGGATCGGCCAGGGTCTGTGGCCGGTACTTCTCAA | + |
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Preference number: 6 (lower is better) Translates to: TSEWYSECPGEK*DRPGSVAGTSQ Trigger: TTGAGAAGTACCGGCCACAGACCCTGGCCGATCTCATTTCTCACCAGGACATTCTGAGTACCATTCAGAAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086461.13 ENSMUST00000111953.2 |
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| CDS CAA 90 bp | GGAATAAAAGAAGGACAAAGGTTAAGTGTCTGGAGGTCTGAGCTGTaGTGGAGTGAGAGTGTCTCCTTCACCTCCAAGACCATGGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: GIKEGQRLSVWRSEL*WSESVSFTSKTMEP Trigger: TGGCTCCATGGTCTTGGAGGTGAAGGAGACACTCTCACTCCACAACAGCTCAGACCTCCAGACACTTAACCTTTGTCCTTCTTTTATTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111953.2 |
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| CDS TCA 72 bp | TGTTCAAAGCCCTTCGCATGTCCCCACTGGACAGAGTaGCAAGGGCCTTCATTCCATCTTCACTTATATCCA | + |
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Preference number: 6 (lower is better) Translates to: CSKPFACPHWTE*QGPSFHLHLYP Trigger: TGGATATAAGTGAAGATGGAATGAAGGCCCTTGTCACTCTGTCCAGTGGGGACATGCGAAGGGCTTTGAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS CCA 72 bp | TCCCTCGGTCGTCAGAAGCATTCAGCTCCAAGACCATaGAGCCAAATTCTTTATCTTTGTACAGTTGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: SLGRQKHSAPRP*SQILYLCTVAW Trigger: CCAAGCAACTGTACAAAGATAAAGAATTTGGCTCCATGGTCTTGGAGCTGAATGCTTCTGACGACCGAGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS CAA 72 bp | ACCATGGAGCCAAATTCTTTATCTTTGTACAGTTGCTaGGCACAGGCCAGGATGGTGGATGTCTTTCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: TMEPNSLSLYSC*AQARMVDVFPV Trigger: GACAGGAAAGACATCCACCATCCTGGCCTGTGCCAAGCAACTGTACAAAGATAAAGAATTTGGCTCCATGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086461.13 ENSMUST00000111953.2 |
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| CDS CAA 72 bp | CAAGACCATGGAGCCAAATTCTTTATCTTTGTACAGTaGCTTGGCACAGGCCAGGATGGTGGATGTCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: QDHGAKFFIFVQ*LGTGQDGGCLS Trigger: GGAAAGACATCCACCATCCTGGCCTGTGCCAAGCAACTGTACAAAGATAAAGAATTTGGCTCCATGGTCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086461.13 ENSMUST00000111953.2 |
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| CDS GCA 72 bp | AAGACCATGGAGCCAAATTCTTTATCTTTGTACAGTTaGTTGGCACAGGCCAGGATGGTGGATGTCTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: KTMEPNSLSLYS*LAQARMVDVFP Trigger: AGGAAAGACATCCACCATCCTGGCCTGTGCCAAGCAACTGTACAAAGATAAAGAATTTGGCTCCATGGTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086461.13 ENSMUST00000111953.2 |
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| CDS CAA 72 bp | GTGCCAACAGAAAGTCTGTACTCGATGTCTGCCATTTaGGTCAATAAGTGTATCCGAACTGAAGATGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: VPTESLYSMSAI*VNKCIRTEDGK Trigger: CTTTCCATCTTCAGTTCGGATACACTTATTGACCAAAATGGCAGACATCGAGTACAGACTTTCTGTTGGCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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| CDS CCA 72 bp | TGCCAACAGAAAGTCTGTACTCGATGTCTGCCATTTTaGTCAATAAGTGTATCCGAACTGAAGATGGAAAGT | + |
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Preference number: 6 (lower is better) Translates to: CQQKVCTRCLPF*SISVSELKMES Trigger: ACTTTCCATCTTCAGTTCGGATACACTTATTGACCAAAATGGCAGACATCGAGTACAGACTTTCTGTTGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086461.13 |
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